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| Agronomy Ontology
| Agronomy Ontology
| Ontology of concepts relevant to agronomy experiments
| Ontology of concepts relevant to [[agronomy]] experiments
| [https://github.com/AgriculturalSemantics/agro]
| [https://github.com/AgriculturalSemantics/agro]
|-
|-
| An ontology of core ecological entities
| An ontology of core ecological entities
| An ontology for ecological entities.
| An ontology for [[Ecology|ecological]] entities.
| [https://github.com/EcologicalSemantics/ecocore]
| [https://github.com/EcologicalSemantics/ecocore]
|-
|-
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|-
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|[[Comprehensive Antibiotic Resistance Database|Antibiotic Resistance Ontology]]
|[[Comprehensive Antibiotic Resistance Database|Antibiotic Resistance Ontology]]
| Ontology for ntibiotic resistance genes and mutations
| Ontology for [[Antimicrobial resistance|antibiotic resistance]] genes and mutations
| [https://github.com/arpcard/aro]
| [https://github.com/arpcard/aro]
|-
|-
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|-
|-
|[[WormBase|C. elegans development ontology]]
|[[WormBase|C. elegans development ontology]]
| An ontology for the development of Caenorhabditis elegans
| An ontology for the development of [[Caenorhabditis elegans]]
| [http://www.wormbase.org/]
| [http://www.wormbase.org/]
|-
|-
|[[WormBase|C. elegans Gross Anatomy Ontology]]
|[[WormBase|C. elegans Gross Anatomy Ontology]]
| An ontology for the anatomy of Caenorhabditis elegans.
| An ontology for the anatomy of [[Caenorhabditis elegans|Caenorhabditis elegans.]]
| [http://www.wormbase.org/]
| [http://www.wormbase.org/]
|-
|-
|[[WormBase|C. elegans phenotype]]
|[[WormBase|C. elegans phenotype]]
| An ontology for the phenotypes of Caenorhabditis elegans
| An ontology for the phenotypes of [[Caenorhabditis elegans]]
| [https://github.com/obophenotype/c-elegans-phenotype-ontology]
| [https://github.com/obophenotype/c-elegans-phenotype-ontology]
|-
|-
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| [http://purl.bioontology.org/ontology/CLO]<br>[http://www.clo-ontology.org]
| [http://purl.bioontology.org/ontology/CLO]<br>[http://www.clo-ontology.org]
|-
|-
| Cell Ontology<ref>{{Cite journal|last=Diehl|first=Alexander D.|last2=Meehan|first2=Terrence F.|last3=Bradford|first3=Yvonne M.|last4=Brush|first4=Matthew H.|last5=Dahdul|first5=Wasila M.|last6=Dougall|first6=David S.|last7=He|first7=Yongqun|last8=Osumi-Sutherland|first8=David|last9=Ruttenberg|first9=Alan|last10=Sarntivijai|first10=Sirarat|last11=Van Slyke|first11=Ceri E.|date=2016-07-04|title=The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability|url=https://doi.org/10.1186/s13326-016-0088-7|journal=Journal of Biomedical Semantics|volume=7|issue=1|pages=44|doi=10.1186/s13326-016-0088-7|issn=2041-1480|pmc=PMC4932724|pmid=27377652}}</ref>
| Cell Ontology: designed as a structured controlled vocabulary for cell types
| Ontology for [[metazoan]] cell types
| ontology
| [http://obofoundry.org/ontology/cl.html]<br>[https://github.com/obophenotype/cell-ontology]
| [http://obofoundry.org/ontology/cl.html]<br>[https://github.com/obophenotype/cell-ontology]
|-
|-
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| [https://github.com/rsc-ontologies/rsc-cmo]
| [https://github.com/rsc-ontologies/rsc-cmo]
|-
|-
| Cigarette Smoke Exposure Ontology<ref>{{cite journal | vauthors = Younesi E, Ansari S, Guendel M, Ahmadi S, Coggins C, Hoeng J, Hofmann-Apitius M, Peitsch MC | display-authors = 6 | title = CSEO - the Cigarette Smoke Exposure Ontology | journal = Journal of Biomedical Semantics | volume = 5 | issue = 1 | pages = 31 | date = 2014 | pmid = 25093069 | pmc = 4120729 | doi = 10.1186/2041-1480-5-31 }}</ref>
| Exposure Ontology<ref>{{cite journal | vauthors = Younesi E, Ansari S, Guendel M, Ahmadi S, Coggins C, Hoeng J, Hofmann-Apitius M, Peitsch MC | display-authors = 6 | title = CSEO - the Cigarette Smoke Exposure Ontology | journal = Journal of Biomedical Semantics | volume = 5 | issue = 1 | pages = 31 | date = 2014 | pmid = 25093069 | pmc = 4120729 | doi = 10.1186/2041-1480-5-31 }}</ref>
| Ontology to describe exposure to environmental factors that might influence clinical outcomes.
| Ontology to describe exposure to environmental factors (such as [[cigarette smoke]]) that might influence clinical outcomes.
|<br>[http://ctdbase.org/help/exposureHelp.jsp]
|<br>[http://ctdbase.org/help/exposureHelp.jsp]
|-
|-
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| [http://purl.obolibrary.org/obo/fbcv]
| [http://purl.obolibrary.org/obo/fbcv]
|-
|-
| Drug-drug Interaction and Drug-drug Interaction Evidence Ontology<ref>{{Cite journal|last=Utecht|first=Joseph|last2=Brochhausen|first2=Mathias|last3=Judkins|first3=John|last4=Schneider|first4=Jodi|last5=Boyce|first5=Richard D.|date=2017|title=Formalizing Evidence Type Definitions for Drug-Drug Interaction Studies to Improve Evidence Base Curation|url=https://www.ncbi.nlm.nih.gov/pubmed/29295242|journal=Studies in Health Technology and Informatics|volume=245|pages=960–964|issn=1879-8365|pmc=5765984|pmid=29295242}}</ref>
| Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
| Ontology for drug-drug interaction evidence.
| Ontology for [[Drug interaction|drug-drug interaction]] evidence.
| [https://github.com/DIDEO/DIDEO]
| [https://github.com/DIDEO/DIDEO]
|-
|-
| Evidence & Conclusion Ontology<ref>{{Cite journal|last=Giglio|first=Michelle|last2=Tauber|first2=Rebecca|last3=Nadendla|first3=Suvarna|last4=Munro|first4=James|last5=Olley|first5=Dustin|last6=Ball|first6=Shoshannah|last7=Mitraka|first7=Elvira|last8=Schriml|first8=Lynn M.|last9=Gaudet|first9=Pascale|last10=Hobbs|first10=Elizabeth T.|last11=Erill|first11=Ivan|date=2019-01-08|title=ECO, the Evidence & Conclusion Ontology: community standard for evidence information|url=https://academic.oup.com/nar/article/47/D1/D1186/5165344|journal=Nucleic Acids Research|language=en|volume=47|issue=D1|pages=D1186–D1194|doi=10.1093/nar/gky1036|issn=0305-1048}}</ref>
| Drug-drug Interaction Evidence Ontology
| An ontology for types evidence used to support scientific claims.
| An ontology for types evidence used to support scientific claims.
|<br>[https://github.com/evidenceontology/evidenceontology/]
|<br>[https://github.com/evidenceontology/evidenceontology/]

Revision as of 12:16, 11 February 2020

This is a list of ontologies that are part of the OBO Foundry as of January 2020.

OBO Foundry ontologies

title description official page
Agronomy Ontology Ontology of concepts relevant to agronomy experiments [1]
An ontology of core ecological entities An ontology for ecological entities. [2]
Anatomical Entity Ontology Ontology of anatomical structures that expand CARO, the Common Anatomy Reference Ontology. [3]
Antibiotic Resistance Ontology Ontology for antibiotic resistance genes and mutations [4]
Apollo Structured Vocabulary[1] Ontology for enabling interoperability of epidemic models and public health application software.
[5]
Ascomycete phenotype ontology A structured controlled vocabulary for the phenotypes of Ascomycete fungi. [6]
Basic Formal Ontology[2] The upper-level ontology upon which OBO Foundry ontologies are built.
[7]
Beta Cell Genomics Ontology An application ontology built for beta cell genomics studies. [8]
Biological Collections Ontology[3] An ontology for biodiversity data [9]
[10]
Biological Imaging Methods Ontology Ontology for methods involved in biomedical imaging, including preparation and acquisition. [11]
Biological Spatial Ontology An ontology for respresenting spatial concepts used in biology [12]
BRENDA tissue / enzyme source An ontology for the source of enzymes. [13]
C. elegans development ontology An ontology for the development of Caenorhabditis elegans [14]
C. elegans Gross Anatomy Ontology An ontology for the anatomy of Caenorhabditis elegans. [15]
C. elegans phenotype An ontology for the phenotypes of Caenorhabditis elegans [16]
Cardiovascular Disease Ontology ontology [17]
[18]
Cell Line Ontology[4] Ontology fo describe cell lines [19]
[20]
Cell Ontology[5] Ontology for metazoan cell types [21]
[22]
Chemical Entities of Biological Interest Ontology of small molecular entities of biological interest [23]
Chemical Information Ontology Ontology for descriptors used in chemoinformatics database [24]
[25]
Chemical Methods Ontology ontology [26]
Exposure Ontology[6] Ontology to describe exposure to environmental factors (such as cigarette smoke) that might influence clinical outcomes.
[27]
clinical LABoratory Ontology An ontology of prescriptions and reports in clinical laboratories. [28]
Clinical measurement ontology Ontology to calssify clinical measurements of experimental animals [29]
Common Anatomy Reference Ontology[7] ontology
[30]
Comparative Data Analysis Ontology[8] Ontology of concepts and relations relevant to evolutionary comparative analysis [31]
[32]
Confidence Information Ontology[9] An ontology to describe confidence information in sequence annotations. [33]
Contributor Role Ontology An ontology for the diverse roles behind a scientific research article. [34]
[35]
Ctenophore Ontology An anatomical and developmental ontology for ctenophores (Comb Jellies) [36]
Dictyostelium discoideum anatomy[10] A structured controlled vocabulary of the anatomy of the slime-mold Dictyostelium discoideum [37]
Dictyostelium discoideum phenotype ontology An ontology for phenotypes of the slime-mould Dictyostelium discoideum. [38]
Drosophila development An ontology of the development of Drosophila melanogaster. [39]
Drosophila gross anatomy[11] An ontology for the anatomy of Drosophila melanogaster. [40]
Drosophila Phenotype Ontology An ontology of common Drosophila phenotypes. [41]
Drug-drug Interaction and Drug-drug Interaction Evidence Ontology[12] Ontology for drug-drug interaction evidence. [42]
Evidence & Conclusion Ontology[13] An ontology for types evidence used to support scientific claims.
[43]
eagle-i resource ontology An ontology of research equipment, protocols and consumables. . [44]
Emotion Ontology An ontology of emotions, moods, and other kinds of feelings. [45]
[46]
Environment Ontology[14] Ontology of environmental features and habitats
[47]
Experimental condition ontology An ontology for the different conditions in which experimental measurements are taken. [48]
Fission Yeast Phenotype Ontology AN ontology of phenotypes of fission yeast. [49]
[50]
Flora Phenotype Ontology An ontology for traits and phenotypes of flowering plants [51]
FlyBase Controlled Vocabulary An ontology to support the FlyBase project. [52]
Food Ontology ontology [53]
Foundational Model of Anatomy Ontology (subset) Subset of the Foundational Model of Anatomy Ontology. [54]
Fungal gross anatomy An ontology for the anatomy of fungi. [55]
Gazetteer An ontology that acts as a gazetteer (geographical dictionary) [56]
Gene Ontology An ontology for describing the function of genes and gene products. [57]
[58]
Genomic Epidemiology Ontology An ontology for foodborne pathogens and associated outbreaks. [59]
[60]
Genotype Ontology An ontology for genotypes and their related phenotypes and diseases. [61]
Geographical Entity Ontology An ontology of geographical entities [62]
Glycan Naming Ontology An ontology for glycans based on GlyTouCan [63]
Homology Ontology An ontology for concepts related to homology [64]
Human Ancestry Ontology An ontology of ancestry concepts used in the NHGRI-EBI Catalog of published genome-wide association studies. [65]
Human Developmental Stages An ontology of stages of the human life. [66]
Human Disease Ontology An ontology for describing human diseases [67]
Human Phenotype Ontology An ontology for human phenotypes in hereditary and non-hereditary diseases. [68]
[69]
HUPO-PSI cross-linking and derivatization reagents controlled vocabulary An ontology for reagents used to cross-link molecules in mass spectrometry experiments. [70]
Hymenoptera Anatomy Ontology An ontology of the anatomy of the Hymenoptera (bees, wasps, and ants) [71]
Hypertension Ontology An ontology for clinical data about hypertension [72]
Infectious Disease Ontology A set of ontologies related to infectious diseases. [73]
Information Artifact Ontology An ontology of information entities. [74]
[75]
Informed Consent Ontology ontology
[76]
Integrative and Conjugative Element Ontology An ontology of bacterial integrative and conjugative elements (ICEs). [77]
Interaction Network Ontology An ontology for gene-gene interactions
[78]
Malaria Ontology An ontology for concepts related to malaria [79]
[80]
Mammalian Feeding Muscle Ontology An ontology for the mammalian muscles that play a role in feeding behavior. [81]
Mammalian Phenotype Ontology Standard terms for annotating mammalian phenotypic data. [82]
Mass spectrometry ontology An ontology for concepts to describe proteomics mass spectrometry. [83]
Measurement method ontology An ontology for methods of clinical and laboratory measurements. [84]
Medaka Developmental Stages An ontology of life stages for the medaka fish. [85]
Mental Disease Ontology An ontology for mental diseases [86]
[87]
Mental Functioning Ontology An ontology for concepts related to mental functioning [88]
[89]
MHC Restriction Ontology An ontology for Major Histocompatibility Complex (MHC) restriction in experiments [90]
MIAPA Ontology An ontology for phylogenetic data [91]
Microbial Conditions Ontology An ontology for microbial growth conditions [92]
microRNA Ontology An ontology for use with miRNA databases. [93]
Minimum PDDI Information Ontology An ontology of the minimum information to describe drug-drug interactions [94]
Molecular Interactions Controlled Vocabulary An ontology for concepts related to the study of protein-protein interactions. [95]
Molecular Process Ontology Ontology for rocesses at the molecular level [96]
Mondo Disease Ontology An ontology for the integration of information on disease
http://obofoundry.org/ontology/mondo.html
[97]
Mosquito gross anatomy ontology An ontology for the anatomy of mosquitoes. [98]
Mouse adult gross anatomy An ontology for the adult anatomy of the mouse (Mus). [99]
Mouse Developmental Stages An ontology of stages of the mouse (Mus) life. [100]
Mouse gross anatomy and development, timed Ontology of anatomical structures of the mouse (Mus musculus). [101]
Mouse Pathology Ontology An ontology of mouse pathology phenotypes. [102]
[103]
Name Reaction Ontology An ontology for organic reactions in organic synthesis. [104]
NCBI organismal classification An ontology representation of the NCBI organismal taxonomy. [105]
Neuro Behavior Ontology An ontology of behavioral phenotypes of animals. [106]
Neuroscience Information Framework Cell Ontology Ontology to describe cell types in animals in general. [107]
[108]
NOMEN - A nomenclatural ontology for biological names An ontology of the rules of nomenclature for biological names. [109]
Non-Coding RNA Ontology An ontology for RNA function [110]
Ontologized MIABIS An ontological version of MIABIS (Minimum Information About BIobank data Sharing) [111]
Ontology for Biobanking An ontology for concepts related to biobanks [112]
[113]
Ontology for Biomedical Investigations An ontology which describes biological processes, cellular components and molecular functions in living organisms [114]
[115]
Ontology for General Medical Science An ontology for general aspects of medicine, with a focus on cancer. [116]
[117]
Ontology for MIRNA Target An ontology for data elements related to microRNA (miR) [118]
Ontology for Parasite LifeCycle A reference ontology for parasite life cycle stages. [119]
Ontology of Adverse Events An ontology for adverse events of drug regimens [120]
Ontology of Arthropod Circulatory Systems An ontology for the circulatory systems of arthropods. [121]
Ontology of Biological and Clinical Statistics An ontology to describe biomedical statistics [122]
Ontology of Biological Attributes An ontology for biological traits [123]
Ontology of Medically Related Social Entities ontology [124]
[125]
Ontology of Microbial Phenotypes An ontology of phenotypes of microbes [126]
Ontology of Organizational Structures of Trauma centers and Trauma systems An ontology for the organizational structures of trauma centers and trauma systems. [127]
Ontology of Precision Medicine and Investigation An ontology for concepts related to precision medicine [128]
Ontology of Prokaryotic Phenotypic and Metabolic Characters An ontology of prokaryotic phenotypic and metabolic characters [129]
Ontology of RNA Sequencing An ontology built for annotation of RNA Sequencing experiments. [130]
Ontology of Vaccine Adverse Events An ontology for adverse events of vaccines. [131]
[132]
Pathogen Host Interaction Phenotype Ontology An ontology of phenotypes that occur in pathogen-host interactions [133]
Pathogen Transmission Ontology An ontology for disease transmission processes [134]
Pathway ontology An ontology for annotating gene products to pathways. [135]
Performance Summary Display Ontology An ontology for concepts related to clinical performance [136]
Phenotype And Trait Ontology FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data. [137]
planaria-ontology An ontology for the anatomy and developmental stages of the planaria (Schmidtea mediterranea.) [138]
Planarian Phenotype Ontology An ontology for phenotypes of the planaria (Schmidtea mediterranea.) [139]
Plant Experimental Conditions Ontology An ontology for concepts related to plant biology experiments. [140]
Plant ontology database resource that links plant traits to genomics data. [141]
Plant Phenology Ontology An ontology for describing the cyclic phenomena of plants. [142]
Plant Trait Ontology An ontology for phenotypic traits in plants. [143]
Platynereis Developmental Stages An ontology for life stages of Platynereis dumerilii [144]
Population and Community Ontology An ontology for describing groups of interacting organisms. [145]
[146]
Porifera Ontology An ontology for the anatomy of sponges (Porifera) [147]
Protein modification An ontology for protein chemical modifications [148]
PRotein Ontology (PRO) An ontological representation of protein-related entities [149]
Rat Strain Ontology An ontology for laboratorial rat strains. [150]
Relation Ontology An ontology for relations between ontologies. [151]
Scientific Evidence and Provenance Information Ontology An ontology for the provenance of scientific claims and supporting evidence. [152]
Sequence types and features ontology An ontology for annotation of sequences [153]
Software Ontology An ontology to describe software applications with a focus on bioinformatics tools. [154]
[155]
Spider Ontology An ontology for anatomy and behavior of spiders as well as spider-derived products. [156]
Symptom Ontology An ontology of disease symptoms [157]
Taxonomic rank vocabulary An ontology of taxonomic ranks in systematics [158]
Teleost taxonomy ontology An ontology for the taxonomy of teleost fish. [159]
The Data Use Ontology Ontology for conditions of data use. [160]
The Drug Ontology An ontology for drug products. [161]
The Drug-Drug Interactions Ontology Ontology for drug-drug interactions. [162]
The Ontology of Genes and Genomes An ontology of genes and genomes of biological organisms. [163]
The Oral Health and Disease Ontology An ontology for the content of teeth-related health records. [164]
The Prescription of Drugs Ontology An ontology for concepts related to prescription of drugs [165]
The Statistical Methods Ontology An ontology for statistical methods, such as tests and experimental desigens [166]
Tick Anatomy Ontology An ontology for the anatomy of the tick families Ixodidae and Argassidae. [167]
Uberon multi-species anatomy ontology An integrative, cross species ontology for anatomical terms [168]
Unified phenotype ontology (uPheno) An ontology for unified phenotypical descriptictions [169]
Units of measurement ontology An ontology of metrical units, couplet to the PATO ontology. [170]
Vaccination Informed Consent Ontology An ontology of clinical informed consents [171]
[172]
Vaccine Ontology An ontology for concepts related to vaccines and vaccination [173]
Vertebrate Taxonomy Ontology An ontology for the taxonomy of vertebrates. [174]
Vertebrate trait ontology An ontology for traits covering vertebrates [175]
VEuPathDB ontology An ontology for the support of the Eukaryotic Pathogen, Host & Vector Genomics Resource. [176]
Xenopus Anatomy Ontology[15] Ontology of the anatomy of the African clawed frog (Xenopus laevis).
[177]
Xenopus Phenotype Ontology An ontology for anatomical, cellular, and gene function phenotypes in Xenopus, the African clawed frogs. [178]
Zebrafish anatomy and development ontology Ontology for the anatomy and development of the Zebrafish. [179]
Zebrafish developmental stages ontology An ontology for developmental stages of zebrafish [180]
Zebrafish Experimental Conditions Ontology An ontology for experimental conditions used in zebrafish research and described in ZFIN. [181]
Zebrafish Phenotype Ontology An ontology for the phenotypes of the Zebrafish. [182]

References

  1. ^ Hogan WR, Wagner MM, Brochhausen M, Levander J, Brown ST, Millett N, et al. (August 2016). "The Apollo Structured Vocabulary: an OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation". Journal of Biomedical Semantics. 7 (1): 50. doi:10.1186/s13326-016-0092-y. PMC 4989460. PMID 27538448.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  2. ^ Arp, Robert, author. Building ontologies with basic formal ontology. ISBN 978-0-262-32958-3. OCLC 951562682. {{cite book}}: |last= has generic name (help)CS1 maint: multiple names: authors list (link)
  3. ^ Walls RL, Deck J, Guralnick R, Baskauf S, Beaman R, Blum S, et al. (2014-03-03). "Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies". PLOS ONE. 9 (3): e89606. Bibcode:2014PLoSO...989606W. doi:10.1371/journal.pone.0089606. PMC 3940615. PMID 24595056.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  4. ^ Sarntivijai S, Lin Y, Xiang Z, Meehan TF, Diehl AD, Vempati UD, et al. (2014-08-13). "CLO: The cell line ontology". Journal of Biomedical Semantics. 5 (1): 37. doi:10.1186/2041-1480-5-37. PMC 4387853. PMID 25852852.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  5. ^ Diehl, Alexander D.; Meehan, Terrence F.; Bradford, Yvonne M.; Brush, Matthew H.; Dahdul, Wasila M.; Dougall, David S.; He, Yongqun; Osumi-Sutherland, David; Ruttenberg, Alan; Sarntivijai, Sirarat; Van Slyke, Ceri E. (2016-07-04). "The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability". Journal of Biomedical Semantics. 7 (1): 44. doi:10.1186/s13326-016-0088-7. ISSN 2041-1480. PMC 4932724. PMID 27377652.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  6. ^ Younesi E, Ansari S, Guendel M, Ahmadi S, Coggins C, Hoeng J, et al. (2014). "CSEO - the Cigarette Smoke Exposure Ontology". Journal of Biomedical Semantics. 5 (1): 31. doi:10.1186/2041-1480-5-31. PMC 4120729. PMID 25093069.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  7. ^ Haendel, Melissa A.; Neuhaus, Fabian; Osumi-Sutherland, David; Mabee, Paula M.; Mejino, Jos L.V.; Mungall, Chris J.; Smith, Barry (2008), "CARO – The Common Anatomy Reference Ontology", Anatomy Ontologies for Bioinformatics, Springer London, pp. 327–349, ISBN 978-1-84628-884-5, retrieved 2020-02-10
  8. ^ Prosdocimi, Francisco; Chisham, Brandon; Pontelli, Enrico; Thompson, Julie D.; Stoltzfus, Arlin (January 2009). "Initial Implementation of a Comparative Data Analysis Ontology". Evolutionary Bioinformatics. 5: EBO.S2320. doi:10.4137/ebo.s2320. ISSN 1176-9343.
  9. ^ Bastian, F. B.; Chibucos, M. C.; Gaudet, P.; Giglio, M.; Holliday, G. L.; Huang, H.; Lewis, S. E.; Niknejad, A.; Orchard, S.; Poux, S.; Skunca, N. (2015-05-09). "The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations". Database. 2015 (0): bav043–bav043. doi:10.1093/database/bav043. ISSN 1758-0463.
  10. ^ Gaudet, Pascale; Williams, Jeffery G; Fey, Petra; Chisholm, Rex L (2008). "An anatomy ontology to represent biological knowledge in Dictyostelium discoideum". BMC Genomics. 9 (1): 130. doi:10.1186/1471-2164-9-130. ISSN 1471-2164.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  11. ^ Costa, Marta; Reeve, Simon; Grumbling, Gary; Osumi-Sutherland, David (2013-10-18). "The Drosophila anatomy ontology". Journal of Biomedical Semantics. 4: 32. doi:10.1186/2041-1480-4-32. ISSN 2041-1480. PMC 4015547. PMID 24139062.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  12. ^ Utecht, Joseph; Brochhausen, Mathias; Judkins, John; Schneider, Jodi; Boyce, Richard D. (2017). "Formalizing Evidence Type Definitions for Drug-Drug Interaction Studies to Improve Evidence Base Curation". Studies in Health Technology and Informatics. 245: 960–964. ISSN 1879-8365. PMC 5765984. PMID 29295242.
  13. ^ Giglio, Michelle; Tauber, Rebecca; Nadendla, Suvarna; Munro, James; Olley, Dustin; Ball, Shoshannah; Mitraka, Elvira; Schriml, Lynn M.; Gaudet, Pascale; Hobbs, Elizabeth T.; Erill, Ivan (2019-01-08). "ECO, the Evidence & Conclusion Ontology: community standard for evidence information". Nucleic Acids Research. 47 (D1): D1186–D1194. doi:10.1093/nar/gky1036. ISSN 0305-1048.
  14. ^ Buttigieg PL, Morrison N, Smith B, Mungall CJ, Lewis SE (December 2013). "The environment ontology: contextualising biological and biomedical entities". Journal of Biomedical Semantics. 4 (1): 43. doi:10.1186/2041-1480-4-43. PMC 3904460. PMID 24330602.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  15. ^ Segerdell E, Ponferrada VG, James-Zorn C, Burns KA, Fortriede JD, Dahdul WM, et al. (October 2013). "Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase". Journal of Biomedical Semantics. 4 (1): 31. doi:10.1186/2041-1480-4-31. PMC 3816597. PMID 24139024.{{cite journal}}: CS1 maint: unflagged free DOI (link)
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