1998–99 Honduran Segunda División
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Standings Zona Norte
| # | Club | PTS |
|---|---|---|
| 1 | Deportes Savio | 54 |
| 2 | Victoria B | 39 |
| 3 | Olimpia Occidental | 39 |
| 4 | Social Sol | 38 |
| 5 | Real Sociedad | 36 |
| 6 | Aguán Valle | 33 |
| 7 | Vero | 31 |
| 8 | Marathón B | 28 |
| 9 | Juventud Occidental | 28 |
| 10 | Real Juventud | 27 |
| 11 | Palestino B | 25 |
| 12 | Real España B | 18 |
| 13 | Sula | 16 |
- Sula relegated to Third Division.
Standings Zona Centro
| # | Club | PTS |
|---|---|---|
| 1 | Tulín | 38 |
| 2 | Atlético Melgar | 37 |
| 3 | Federal | 31 |
| 4 | Motagua B | 28 |
| 5 | Comayagua | 22 |
| 6 | Juventud Catacamas | 21 |
| 7 | Atlético Independiente | 17 |
| 8 | Fantasmas del Broncos | 15 |
| 9 | Universidad B | 15 |
| 10 | Broncos B | 13 |
- Broncos B relegated to Third Division.
Final round
Octagonal
- Deportes Savio vs Motagua B
- Victoria Reservas vs Federal
- Social Sol vs Tulín
- Atlético Melgar vs Olimpia Occidental
Final
- Federal vs Social Sol (Federal promoted to Liga Nacional de Fútbol de Honduras)