List of single cell omics methods
Appearance
A list of more than 100 different single cell sequencing (omics) methods have been published.[1] The large majority of methods are paired with short-read sequencing technologies, although some of them are compatible with long read sequencing.
List
Method | Reference | Sequencing Mode | Early Estimate | Late Estimate |
---|---|---|---|---|
Tang method | [2] | Short Reads | 2008 | 2009 |
CyTOF | [3] | Short Reads | 2011 | 2012 |
STRT-seq / C1 | [4] | Short Reads | 2011 | 2012 |
SMART-seq | [5] | Short Reads | 2012 | 2013 |
CEL-seq | [6] | Short Reads | 2012 | 2013 |
Quartz-Seq | [7] | Short Reads | 2012 | 2013 |
PMA / SMA | [8] | Short Reads | 2012 | 2013 |
scBS-seq | [9] | Short Reads | 2013 | 2014 |
AbPair | [10] | Short Reads | 2014 | 2014 |
MARS-seq | [11] | Short Reads | 2014 | 2015 |
DR-seq | [12] | Short Reads | 2014 | 2015 |
G&T-Seq | [13] | Short Reads | 2014 | 2015 |
SCTG | [14] | Short Reads | 2014 | 2015 |
SIDR-seq | [15] | Short Reads | 2014 | 2015 |
sci-ATAC-seq | [16] | Short Reads | 2014 | 2015 |
Hi-SCL | [17] | Short Reads | 2015 | 2015 |
SUPeR-seq | [18] | Short Reads | 2015 | 2015 |
Drop-Chip | [19] | Short Reads | 2015 | 2015 |
CytoSeq | [20] | Short Reads | 2015 | 2016 |
inDrop | [21] | Short Reads | 2015 | 2016 |
sc-GEM | [22] | Short Reads | 2015 | 2016 |
scTrio-seq | [23] | Short Reads | 2015 | 2016 |
scM&T-seq | [24] | Short Reads | 2015 | 2016 |
PLAYR | [25] | Short Reads | 2015 | 2016 |
Genshaft-et-al-2016 | [26] | Short Reads | 2015 | 2016 |
Darmanis-et-al-2016 | [27] | Short Reads | 2015 | 2016 |
CRISP-seq | [28] | Short Reads | 2015 | 2016 |
scGESTALT | [29] | Short Reads | 2015 | 2016 |
CEL-Seq2 / C1 | [30] | Short Reads | 2015 | 2016 |
STRT-seq-2i | [31] | Short Reads | 2016 | 2017 |
RNAseq @10xgenomics | [32] | Short Reads | 2016 | 2017 |
RNAseq / Gene Expression @nanostringtech | [33] | Short Reads | 2016 | 2017 |
sc Targeted Gene Expression @fluidigm | [34] | Short Reads | 2016 | 2017 |
scTCR Wafergen | [35] | Short Reads | 2016 | 2017 |
CROP-seq | [36] | Short Reads | 2016 | 2017 |
SiC-seq | [37] | Short Reads | 2016 | 2017 |
mcSCRB-seq | [38] | Short Reads | 2016 | 2017 |
Patch-seq | [39] | Short Reads | 2016 | 2017 |
Geo-seq | [40] | Short Reads | 2016 | 2017 |
scNOMe-seq | [41] | Short Reads | 2016 | 2017 |
scCOOL-seq | [42] | Short Reads | 2016 | 2017 |
CUT&Run | [43] | Short Reads | 2016 | 2017 |
MATQ-seq | [44] | Short Reads | 2016 | 2017 |
Quartz-Seq2 | [45] | Short Reads | 2017 | 2018 |
Seq-Well | [46] | Short Reads | 2017 | 2018 |
DroNC-Seq | [47] | Short Reads | 2017 | 2018 |
sci-RNA-seq | [48] | Short Reads | 2017 | 2018 |
scATAC @10xgenomics | [49] | Short Reads | 2017 | 2018 |
scVDJ @10xgenomics | [50] | Short Reads | 2017 | 2018 |
scNMT triple omics | [51] | Short Reads | 2017 | 2018 |
SPLIT-seq Split Biosciences | [52] | Short Reads | 2017 | 2018 |
CITE-Seq | [53] | Short Reads | 2017 | 2018 |
scMNase-seq | [54] | Short Reads | 2017 | 2018 |
Chaligne-et-al-2018 | [55] | Short Reads | 2017 | 2018 |
LINNAEUS | [56] | Short Reads | 2017 | 2018 |
TracerSeq | [57] | Short Reads | 2017 | 2018 |
CellTag | [58] | Short Reads | 2017 | 2018 |
ScarTrace | [59] | Short Reads | 2017 | 2018 |
scRNA-Seq Dolomite Bio | [60] | Short Reads | 2017 | 2018 |
Trac-looping | [61] | Short Reads | 2017 | 2018 |
Perturb-ATAC | [62] | Short Reads | 2018 | 2019 |
scMethylation | [63] | Short Reads | 2018 | 2019 |
scHiC | [64] | Short Reads | 2018 | 2019 |
Multiplex Droplet scRNAseq | [65] | Short Reads | 2018 | 2019 |
sci-CAR | [66] | Short Reads | 2018 | 2019 |
C1 CAGE single cell | [67] | Short Reads | 2018 | 2019 |
sc paired microRNA-mRNA | [68] | Short Reads | 2018 | 2019 |
scCAT-seq | [69] | Short Reads | 2018 | 2019 |
REAP-seq @fluidigm | [70] | Short Reads | 2018 | 2019 |
scCC | [71] | Short Reads | 2018 | 2019 |
yscRNA-SEQ | [72] | Short Reads | 2018 | 2019 |
TARGET-seq | [73] | Short Reads | 2018 | 2019 |
MULTI-seq | [74] | Short Reads | 2018 | 2019 |
snRNA-seq | [75] | Short Reads | 2018 | 2019 |
sci-RNA-seq3 | [76] | Short Reads | 2018 | 2019 |
BRIF-seq | [77] | Short Reads | 2018 | 2019 |
Drop-seq Dolomite Bio | [60] | Short Reads | 2018 | 2019 |
Slide-seq | [78] | Short Reads | 2018 | 2019 |
CUT&Tag | [79] | Short Reads | 2018 | 2019 |
CellTagging | [80] | Short Reads | 2018 | 2019 |
DART-Seq | [81] | Short Reads | 2018 | 2019 |
scDamID&T | [82] | Short Reads | 2018 | 2019 |
ACT-seq | [83] | Short Reads | 2018 | 2019 |
Sci-Hi-C | [84] | Short Reads | 2018 | 2019 |
Slide-seq | [85] | Short Reads | 2018 | 2019 |
Simplified-Drop-seq | [86] | Short Reads | 2018 | 2019 |
scChIC-seq | [87] | Short Reads | 2018 | 2019 |
Dip-C | [88] | Short Reads | 2018 | 2019 |
CoBATCH | [89] | Short Reads | 2018 | 2019 |
Convert-seq | [90] | Short Reads | 2018 | 2019 |
Droplet-based scATAC-seq | [91] | Short Reads | 2018 | 2019 |
ECCITE-seq | [92] | Short Reads | 2018 | 2019 |
dsciATAC-seq | [91] | Short Reads | 2018 | 2019 |
CLEVER-seq | [93] | Short Reads | 2018 | 2019 |
scISOr-Seq | [94] | Short Reads | 2018 | 2019 |
MARS-seq2.0 | [95] | Short Reads | 2018 | 2019 |
nano-NOMe | [96] | Long Reads | 2018 | 2019 |
MeSMLR-seq | [97] | Long Reads | 2018 | 2019 |
SMAC-seq | [98] | Long Reads | 2018 | 2019 |
MoonTag/SunTag | [99] | Short Reads | 2018 | 2019 |
SCoPE2 | [100] | Short Reads | 2018 | 2019 |
sci-fate | [101] | Short Reads | 2018 | 2019 |
µDamID | [102] | Short Reads | 2018 | 2019 |
Methyl-HiC | [103] | Short Reads | 2018 | 2019 |
RAGE-seq | [104] | Long Reads | 2018 | 2019 |
Paired-Seq | [105] | Short Reads | 2018 | 2019 |
Tn5Prime | [106] | Short Reads | 2018 | 2019 |
NanoPARE | [107] | Short Reads | 2018 | 2019 |
BART-Seq | [108] | Short Reads | 2018 | 2019 |
scDam&T-seq | [109] | Short Reads | 2018 | 2019 |
itChIP-seq | [110] | Short Reads | 2018 | 2019 |
SNARE-seq | [111] | Short Reads | 2018 | 2019 |
ASTAR-seq | [112] | Short Reads | 2018 | 2019 |
sci-Plex | [113] | Short Reads | 2018 | 2019 |
MIX-Seq | [114] | Short Reads | 2018 | 2019 |
microSPLiT | [115] | Short Reads | 2018 | 2019 |
PAIso-seq | [116] | Short Reads | 2018 | 2019 |
FIN-Seq | [117] | Short Reads | 2018 | 2019 |
LIBRA-seq | [118] | Short Reads | 2018 | 2019 |
scifi-RNA-seq | [119] | Short Reads | 2018 | 2019 |
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