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ClearVolume

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ClearVolume[1] is an open source real-time live 3D visualization library designed for high-end volumetric light sheet microscopes. ClearVolume enables the live visualization of microscope data - allowing the biologists to immediately decide whether a sample is worth imaging. ClearVolume can easily be integrated into existing Java, C/C++, Python, or LabVIEW based microscope software. It has a dedicated interface to MicroManager/OpenSpim/OpenSpin control software. ClearVolume supports multi-channels, live 3D data streaming from remote microscopes, and uses a multi-pass Fibonacci rendering algorithm that can handle large volumes. Moreover,ClearVolume is integrated into the FiJi/ImageJ2/KNIME ecosystem.

See also

References

  1. ^ Royer, Loïc A; Weigert, Martin; Günther, Ulrik; Maghelli, Nicola; Jug, Florian; Sbalzarini, Ivo F.; Myers, Eugene W. (2015). "ClearVolume – Open-source live 3D visualization for light sheet microscopy". Nature Methods. 12: 480–481. doi:10.1038/nmeth.3372. PMID 26020498.
  • [1] Website of the open source ClearVolume project with links to the wiki, code repositories and issue tracking.
  • [2] ClearVolume KNIME plugin project page.
  • [3] ClearVolume FiJi plugin project page.
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