CollecTF

CollecTF
Content
Description	database of experimentally validated TF-binding sites
Organisms	bacteria
Contact
Authors	Kılıç, et al. (2014)
Primary citation	PMID 24234444
Release date	2013
Access
Data format	FASTA, CSV, ARFF
Website	collectf.org; compbio.umbc.edu
Download URL	[1]

CollecTF is a database of transcription factor binding sites in the Bacteria domain.^[1]

CollecTF compiles only experimentally validated TF-binding sites. This is accomplished through the manual curation of peer-reviewed literature with a special focus on the experimental process used to identify TF-binding sites.

CollecTF entries are periodically submitted to NCBI for integration into RefSeq complete genome records as link-out features, maximizing the visibility of the data and enriching the annotation of RefSeq files with regulatory information. Seeking to facilitate comparative genomics and machine-learning analyses of regulatory interactions, in its initial release CollecTF provides domain-wide coverage of two TF families (LexA and Fur), as well as extensive representation for a clinically important bacterial family, the Vibrionaceae.

References

^ ^a ^b Kilic, S.; White, E. R.; Sagitova, D. M.; Cornish, J. P.; Erill, I. (14 November 2013). "CollecTF: a database of experimentally validated transcription factor-binding sites in Bacteria". Nucleic Acids Research. 42 (D1): D156–D160. doi:10.1093/nar/gkt1123. PMID 24234444.

External links

http://collectf.umbc.edu

[collectf-1] Kilic, S.; White, E. R.; Sagitova, D. M.; Cornish, J. P.; Erill, I. (14 November 2013). "CollecTF: a database of experimentally validated transcription factor-binding sites in Bacteria". Nucleic Acids Research. 42 (D1): D156–D160. doi:10.1093/nar/gkt1123. PMID 24234444.

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