MARCH5

From Wikipedia, the free encyclopedia
MARCHF5
Identifiers
AliasesMARCHF5, MARCH-V, MITOL, RNF153, membrane associated ring-CH-type finger 5, MARCH5
External IDsOMIM: 610637 MGI: 1915207 HomoloGene: 9862 GeneCards: MARCHF5
Orthologs
SpeciesHumanMouse
Entrez

54708

69104

Ensembl

ENSG00000198060

ENSMUSG00000023307

UniProt

Q9NX47

Q3KNM2

RefSeq (mRNA)

NM_017824

NM_001164336
NM_001164337
NM_027314
NM_001378797
NM_001378798

RefSeq (protein)

NP_060294

NP_001157808
NP_001157809
NP_081590
NP_001365726
NP_001365727

Location (UCSC)Chr 10: 92.29 – 92.35 MbChr 19: 37.18 – 37.2 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

E3 ubiquitin-protein ligase MARCH5, also known as membrane-associated ring finger (C3HC4) 5, is an enzyme that, in humans, is encoded by the MARCH5 gene. It is localized in the mitochondrial outer membrane and has four transmembrane domains.[5][6][7]

Structure[edit]

Gene[edit]

The human gene MARCH5, also known as MITOL or RNF153, has 7 Exons and locates at the chromosome band 10q23.32-q23.33.[6]

Protein[edit]

The human E3 ubiquitin-protein ligase MARCH5 protein, a member of the transmembrane RING‐finger protein family[8] is 31 kDa in size and composed of 278 amino acids with a N-terminal Zinc-finger domain at amino acid sequence 6-75 and four C-terminal transmembrane spans.[7] The theoretical PI of this protein is 9.00.[9]

Function[edit]

As an E3 ubiquitin ligases, enzyme MARCH 5 catalyzes the transfer of ubiquitin from an E2 ubiquitin-conjugating enzyme to an identified protein substrate. MARCH5 was firstly identified as a mitofusin 2- and Drp1-binding protein.[7] MARCH5 promotes ubiquitination of Drp1 and a knockdown of MARCH5 is by RNAi led to abnormal mitochondrial fusion.[10] Further evidences show that MARCH 5 specifically interacts with mitofusin 1, by reducing the levels of it during certain phases of the cell cycle.[11] Given the facts that MARCH5 regulates the protein proteostasis of Drp1, mitofusin 1, and mitofusin 2 that are pivotal regulators of mitochondrial fusion and fission, MARCH5 is critical for the regulation of standard mitochondria morphology, and deficiencies in it promote cellular senescence.[12]

Clinical significance[edit]

Considering that both Drp1 and MAP1B are substrates for MITOL, MITOL is thought to play a protective role against nitrosative stress-mediated disruption of mitochondrial dynamics such as morphological stability and transport of mitochondria. As significantly decreased expression of MITOL occurs in response to ageing in normal tissues, MITOL may control ageing by regulating the production of ROS in mitochondria.[13] From a pathological perspective, in a neuronal cell model, dominant-negative MARCH5 prevents mitochondrial fragmentation during neurodegenerative stress induced by the neuron-specific reactive oxygen generator 6-hydroxydopamine, the complex I inhibitor rotenone or Alzheimer's-related amyloid beta peptide. MARCH5 is also involved in the removal of proteins associated with specific neurodegenerative disorders such as ataxin-3 in Machado–Joseph disease or mSOD1 in amyotrophic lateral sclerosis likely supporting mitochondrial function.[14] MARCH5 has also been linked to toll-like receptors (TLRs), which recognize distinct pathogen-associated molecular patterns and play a critical role in the innate immune response.[15]

Ubiquitin-dependent degradation pathways have clear cancer relevance due to their integral involvement in protein quality control, regulation of immune responses, signal transduction, and cell cycle regulation.[16]

Gene name error in Excel[edit]

Main article: Microsoft Excel § Conversion problems

Like the other MARCH and septin genes, care must be exercised when analyzing genetic data containing the MARCH5 gene in Microsoft Excel.[17] This is due to Excel's autocorrect feature treating the MARCH gene as a date and converting it to a standard date format. The original text cannot be recovered as a result of the conversion. A 2016 study found up to 19.6% of all papers in selected journals to be affected by the gene name error.[18] The issue can be prevented by using an alias name such as MARCHF5, prepending with an apostrophe ('), or preformatting the cell as text.

References[edit]

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000198060 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000023307 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Bartee E, Mansouri M, Hovey Nerenberg BT, Gouveia K, Früh K (Feb 2004). "Downregulation of major histocompatibility complex class I by human ubiquitin ligases related to viral immune evasion proteins". Journal of Virology. 78 (3): 1109–20. doi:10.1128/JVI.78.3.1109-1120.2004. PMC 321412. PMID 14722266.
  6. ^ a b "Entrez Gene: MARCH5 membrane-associated ring finger (C3HC4) 5".
  7. ^ a b c Nakamura N, Kimura Y, Tokuda M, Honda S, Hirose S (Oct 2006). "MARCH-V is a novel mitofusin 2- and Drp1-binding protein able to change mitochondrial morphology". EMBO Reports. 7 (10): 1019–22. doi:10.1038/sj.embor.7400790. PMC 1618377. PMID 16936636.
  8. ^ Lehner PJ, Hoer S, Dodd R, Duncan LM (Oct 2005). "Downregulation of cell surface receptors by the K3 family of viral and cellular ubiquitin E3 ligases". Immunological Reviews. 207: 112–25. doi:10.1111/j.0105-2896.2005.00314.x. PMID 16181331. S2CID 25567313.
  9. ^ "Uniprot: Q9NX47 - MARH5_HUMAN".
  10. ^ Yonashiro R, Ishido S, Kyo S, Fukuda T, Goto E, Matsuki Y, Ohmura-Hoshino M, Sada K, Hotta H, Yamamura H, Inatome R, Yanagi S (Aug 2006). "A novel mitochondrial ubiquitin ligase plays a critical role in mitochondrial dynamics". The EMBO Journal. 25 (15): 3618–26. doi:10.1038/sj.emboj.7601249. PMC 1538564. PMID 16874301.
  11. ^ Park YY, Cho H (2012). "Mitofusin 1 is degraded at G2/M phase through ubiquitylation by MARCH5". Cell Division. 7 (1): 25. doi:10.1186/1747-1028-7-25. PMC 3542011. PMID 23253261.
  12. ^ Park YY, Lee S, Karbowski M, Neutzner A, Youle RJ, Cho H (Feb 2010). "Loss of MARCH5 mitochondrial E3 ubiquitin ligase induces cellular senescence through dynamin-related protein 1 and mitofusin 1". Journal of Cell Science. 123 (Pt 4): 619–26. doi:10.1242/jcs.061481. PMC 2818198. PMID 20103533.
  13. ^ Nagashima S, Tokuyama T, Yonashiro R, Inatome R, Yanagi S (May 2014). "Roles of mitochondrial ubiquitin ligase MITOL/MARCH5 in mitochondrial dynamics and diseases". Journal of Biochemistry. 155 (5): 273–9. doi:10.1093/jb/mvu016. PMID 24616159.
  14. ^ Fang L, Li J, Flammer J, Neutzner A (2013). "MARCH5 inactivation supports mitochondrial function during neurodegenerative stress". Frontiers in Cellular Neuroscience. 7: 176. doi:10.3389/fncel.2013.00176. PMC 3794199. PMID 24133412.
  15. ^ Shi HX, Liu X, Wang Q, Tang PP, Liu XY, Shan YF, Wang C (May 2011). "Mitochondrial ubiquitin ligase MARCH5 promotes TLR7 signaling by attenuating TANK action". PLOS Pathogens. 7 (5): e1002057. doi:10.1371/journal.ppat.1002057. PMC 3098239. PMID 21625535.
  16. ^ Wang X, Herr RA, Hansen T (Dec 2008). "Viral and cellular MARCH ubiquitin ligases and cancer". Seminars in Cancer Biology. 18 (6): 441–50. doi:10.1016/j.semcancer.2008.09.002. PMC 2636702. PMID 18948196.
  17. ^ Zeeberg BR, Riss J, Kane DW, Bussey KJ, Uchio E, Linehan WM, et al. (June 2004). "Mistaken identifiers: gene name errors can be introduced inadvertently when using Excel in bioinformatics". BMC Bioinformatics. 5 (1): 80. doi:10.1186/1471-2105-5-80. PMC 459209. PMID 15214961.
  18. ^ Ziemann M, Eren Y, El-Osta A (August 2016). "Gene name errors are widespread in the scientific literature". Genome Biology. 17 (1): 177. doi:10.1186/s13059-016-1044-7. PMC 4994289. PMID 27552985.

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Further reading[edit]

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