Andy Brass: Difference between revisions

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| doctoral_advisor =
| doctoral_advisor =
| academic_advisors =
| academic_advisors =
| doctoral_students = {{Plainlist|
* Paul Fisher<ref name="fisherphd">{{cite thesis |degree=PhD |first=Paul Ryan|last=Fisher|title=Towards a systematic approach to the large-scale analysis of genotype-phenotype correlations|publisher=University of Manchester |date=2009|url=http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.516331}}</ref><ref name="ReferenceA">{{Cite journal
| last1 = Noyes | first1 = H.
| last2 = Brass | first2 = A.
| authorlink2 = Andy Brass
| last3 = Obara | first3 = I.
| last4 = Anderson | first4 = S.
| last5 = Archibald | first5 = A. L.
| last6 = Bradley | first6 = D. G.
| last7 = Fisher | first7 = P.
| last8 = Freeman | first8 = A.
| last9 = Gibson | first9 = J.
| last10 = Gicheru
| doi = 10.1073/pnas.1013486108 | first10 = M.
| last11 = Hall | first11 = L.
| last12 = Hanotte | first12 = O.
| last13 = Hulme | first13 = H.
| last14 = McKeever | first14 = D.
| last15 = Murray | first15 = C.
| last16 = Oh | first16 = S. J.
| last17 = Tate | first17 = C.
| last18 = Smith | first18 = K.
| last19 = Tapio | first19 = M.
| last20 = Wambugu | first20 = J.
| last21 = Williams | first21 = D. J.
| last22 = Agaba | first22 = M.
| last23 = Kemp | first23 = S. J.
| title = Genetic and expression analysis of cattle identifies candidate genes in pathways responding to Trypanosoma congolense infection
| journal = Proceedings of the National Academy of Sciences
| volume = 108
| issue = 22
| pages = 9304–9309
| year = 2011
| pmid = 21593421
| pmc =3107286
}}</ref><ref>{{Cite book
| last1 = Fisher | first1 = P.
| last2 = Noyes | first2 = H.
| last3 = Kemp | first3 = S.
| last4 = Stevens | first4 = R.
| authorlink4 = Robert David Stevens
| last5 = Brass | first5 = A.
| authorlink5 = Andy Brass
| doi = 10.1007/978-1-60761-247-6_18
| chapter = A Systematic Strategy for the Discovery of Candidate Genes Responsible for Phenotypic Variation
| title = Cardiovascular Genomics
| series = Methods in Molecular Biology
| volume = 573
| pages = 329–345
| year = 2009
| isbn = 978-1-60761-246-9
| pmid = 19763936
| pmc =
}}</ref><ref>{{Cite journal
| doi = 10.1159/000317174
| last1 = Rennie | first1 = C.
| last2 = Hulme | first2 = H.
| last3 = Fisher | first3 = P.
| last4 = Halp | first4 = L.
| last5 = Agaba | first5 = M.
| last6 = Noyes | first6 = H. A.
| last7 = Kemp | first7 = S. J.
| last8 = Brass | first8 = A.
| authorlink8 = Andy Brass
| title = A systematic, data-driven approach to the combined analysis of microarray and QTL data
| series = Developments in Biologicals
| journal = Developments in biologicals
| volume = 132
| pages = 293–299
| year = 2008
| isbn = 978-3-8055-8619-1
| pmid = 18817316
}}</ref><ref name="pmid17709344">{{Cite journal
| last1 = Fisher | first1 = P.
| last2 = Hedeler | first2 = C.
| last3 = Wolstencroft | first3 = K.
| last4 = Hulme | first4 = H.
| last5 = Noyes | first5 = H.
| last6 = Kemp | first6 = S.
| last7 = Stevens | first7 = R.
| authorlink7 = Robert David Stevens
| last8 = Brass | first8 = A.
| authorlink8 = Andy Brass
| doi = 10.1093/nar/gkm623
| title = A systematic strategy for large-scale analysis of genotype phenotype correlations: Identification of candidate genes involved in African trypanosomiasis
| journal = Nucleic Acids Research
| volume = 35
| issue = 16
| pages = 5625–5633
| year = 2007
| pmid = 17709344
| pmc =2018629
}}</ref>
* Nam Shik Han<ref name="hanphd">{{cite thesis |degree=PhD |first=Nam Shik|last=Han|title=Systematic approaches for modelling and visualising responses to perturbation of transcriptional regulatory networks|publisher=University of Manchester |date=2013|url=http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.568639}}</ref>
* Leila Kalankesh<ref name="ranaphd">{{cite thesis |degree=PhD |first=Leila|last=Ranandeh Kalankesh |title=Exploring nature of the structured data in GP electronic patient records|publisher=University of Manchester |date=2010 |url=http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.529222}}</ref><ref>{{Cite journal
| last1 = Kalankesh | first1 = L. R.
| last2 = Stevens | first2 = R.
| authorlink2 = Robert David Stevens
| last3 = Brass | first3 = A.
| title = The language of gene ontology: A Zipf's law analysis
| doi = 10.1186/1471-2105-13-127
| journal = BMC Bioinformatics
| volume = 13
| pages = 127
| year = 2012
| pmid = 22676436
| pmc = 3473240
}}</ref>
* Ann-Marie Mallon<ref name="mallonphd">{{cite thesis |degree=PhD |first=Ann-Marie|last=Mallon |title=Comparative analysis of the mouse and human genomes|publisher=University of Manchester |date=2004|url=https://books.google.com/books?id=pJdwcgAACAAJ}}</ref>
* Norman Morrison<ref name="normanphd">{{cite thesis |degree=PhD |first=Norman|last=Morrison|title=Microarray data analysis: a comparison of normalisation techniques and case study|publisher=University of Manchester |date=2003|url=https://books.google.com/books?id=os5mcgAACAAJ}}</ref>
* Catriona Tate<ref name="ReferenceA">{{Cite journal
| last1 = Noyes | first1 = H.
| last2 = Brass | first2 = A.
| authorlink2 = Andy Brass
| last3 = Obara | first3 = I.
| last4 = Anderson | first4 = S.
| last5 = Archibald | first5 = A. L.
| last6 = Bradley | first6 = D. G.
| last7 = Fisher | first7 = P.
| last8 = Freeman | first8 = A.
| last9 = Gibson | first9 = J.
| last10 = Gicheru
| doi = 10.1073/pnas.1013486108 | first10 = M.
| last11 = Hall | first11 = L.
| last12 = Hanotte | first12 = O.
| last13 = Hulme | first13 = H.
| last14 = McKeever | first14 = D.
| last15 = Murray | first15 = C.
| last16 = Oh | first16 = S. J.
| last17 = Tate | first17 = C.
| last18 = Smith | first18 = K.
| last19 = Tapio | first19 = M.
| last20 = Wambugu | first20 = J.
| last21 = Williams | first21 = D. J.
| last22 = Agaba | first22 = M.
| last23 = Kemp | first23 = S. J.
| title = Genetic and expression analysis of cattle identifies candidate genes in pathways responding to Trypanosoma congolense infection
| journal = Proceedings of the National Academy of Sciences
| volume = 108
| issue = 22
| pages = 9304–9309
| year = 2011
| pmid = 21593421
| pmc =3107286
}}</ref><ref name="tatephd">{{cite thesis |degree=PhD |first=Catriona Mary|last=Tate|title=Effect of probe-target sequence mismatches on the results of microarray hybridisations: position-dependence, modelling and impact of evolutionary distance|publisher=University of Manchester |date=2010|url=https://books.google.com/books?id=rOlHMwEACAAJ}}</ref>
* Hannah Tipney<ref name="tipneyphd">{{cite thesis |degree=PhD |first=Hannah Jane|last=Tipney|title=Bioinformatics as a tool to predict gene function in Williams-Beuren Syndrome
|publisher=University of Manchester |date=2006|url=https://books.google.com/books?id=A18FcgAACAAJ}}</ref><ref>{{Cite journal
| last1 = Hinsley | first1 = T. A.
| last2 = Cunliffe | first2 = P.
| last3 = Tipney | first3 = H. J.
| last4 = Brass | first4 = A.
| authorlink4 = Andy Brass
| last5 = Tassabehji | first5 = M.
| title = Comparison of TFII-I gene family members deleted in Williams-Beuren syndrome
| doi = 10.1110/ps.04747604
| journal = Protein Science
| volume = 13
| issue = 10
| pages = 2588–2599
| year = 2009
| pmid = 15388857
| pmc =2286546
}}</ref><ref>{{Cite journal
| last1 = Stevens | first1 = R. D.
| authorlink1 = Robert David Stevens
| last2 = Tipney | first2 = H. J.
| last3 = Wroe | first3 = C. J.
| last4 = Oinn | first4 = T. M.
| last5 = Senger | first5 = M.
| last6 = Lord | first6 = P. W.
| last7 = Goble | first7 = C. A.
| authorlink7 = Carole Goble
| last8 = Brass | first8 = A.
| authorlink8 = Andy Brass
| last9 = Tassabehji | first9 = M.

| title = Exploring Williams-Beuren syndrome using myGrid
| doi = 10.1093/bioinformatics/bth944
| journal = Bioinformatics
| volume = 20
| pages = i303–i310
| year = 2004
| pmid = 15262813
| pmc =
}}</ref><ref>{{Cite journal
| last1 = Tipney | first1 = H. J.
| last2 = Hinsley | first2 = T. A.
| last3 = Brass | first3 = A.
| authorlink3 = Andy Brass
| last4 = Metcalfe | first4 = K.
| last5 = Donnai | first5 = D.
| last6 = Tassabehji | first6 = M.
| doi = 10.1038/sj.ejhg.5201174
| title = Isolation and characterisation of GTF2IRD2, a novel fusion gene and member of the TFII-I family of transcription factors, deleted in Williams–Beuren syndrome
| journal = European Journal of Human Genetics
| volume = 12
| issue = 7
| pages = 551–560
| year = 2004
| pmid = 15100712
| pmc =
}}</ref>
* Katy Wolstencroft<ref name="pmid17709344"/><ref name="wolstenphd">{{cite thesis |degree=PhD |first=Katherine Jane|last=Wolstencroft |title=Ontological methods for structuring and managing protein family resources|publisher=University of Manchester |date=2005|url=http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.523031}}</ref><ref>{{Cite journal
| last1 = Wolstencroft | first1 = K.
| last2 = Lord | first2 = P.
| last3 = Tabernero | first3 = L.
| last4 = Brass | first4 = A.
| authorlink4 = Andy Brass
| last5 = Stevens | first5 = R.
| authorlink5 = Robert David Stevens
| title = Protein classification using ontology classification
| doi = 10.1093/bioinformatics/btl208
| journal = Bioinformatics
| volume = 22
| issue = 14
| pages = e530–e538
| year = 2006
| pmid = 16873517
| pmc =
}}</ref><ref>{{Cite journal
| last1 = Wolstencroft | first1 = K.
| last2 = McEntire | first2 = R.
| last3 = Stevens | first3 = R.
| authorlink3 = Robert David Stevens
| last4 = Tabernero | first4 = L.
| last5 = Brass | first5 = A.
| authorlink5 = Andy Brass
| title = Constructing ontology-driven protein family databases
| doi = 10.1093/bioinformatics/bti158
| journal = Bioinformatics
| volume = 21
| issue = 8
| pages = 1685–1692
| year = 2004
| pmid = 15564301
| pmc =
}}</ref><ref>{{Cite journal
| last1 = Wolstencroft | first1 = K. J.
| last2 = Stevens | first2 = R.
| authorlink2 = Robert David Stevens
| last3 = Tabernero | first3 = L.
| last4 = Brass | first4 = A.
| authorlink4 = Andy Brass
| title = PhosphaBase: An ontology-driven database resource for protein phosphatases
| doi = 10.1002/prot.20325
| journal = Proteins: Structure, Function, and Bioinformatics
| volume = 58
| issue = 2
| pages = 290–294
| year = 2004
| pmid = 15558746
| pmc =
}}</ref>}}
| notable_students =
| notable_students =
| known_for =
| known_for =

Revision as of 13:21, 23 October 2017

Andy Brass
Born
Andrew M. Brass

United Kingdom
Alma materUniversity of Edinburgh
Scientific career
FieldsBioinformatics
Institutions
ThesisMolecular dynamics simulations of fluorite structure crystals (1987)
Websitemanchester.ac.uk/research/andy.brass

Andrew M. Brass is a Professor of Bioinformatics at the University of Manchester in the School of Computer Science and Faculty of Life Sciences.[1][2][3][4][5]

Education

Brass was educated at the University of Edinburgh, receiving his PhD on Solid-state physics in 1987.[6]

Research

Following his PhD, Brass worked at McMaster University[7][8] in Canada on a NATO fellowship to study aspects of high-temperature superconductivity and strongly coupled electron systems. In 1990 he moved to the University of Manchester[9][10] to become a founding member of the bioinformatics group, where he has a wide range of projects in protein function prediction, gene expression analysis, intelligent integration,[11] automated curation,[12] and bioinformatics education.[13]

References

  1. ^ Andy Brass publications indexed by Google Scholar Edit this at Wikidata
  2. ^ Andy Brass publications indexed by Microsoft Academic
  3. ^ Andy Brass at DBLP Bibliography Server Edit this at Wikidata
  4. ^ Andy Brass's publications indexed by the Scopus bibliographic database. (subscription required)
  5. ^ Andy Brass author profile page at the ACM Digital Library Edit this at Wikidata
  6. ^ Brass, Andrew (1987). Molecular dynamics simulations of fluorite structure crystals (PhD thesis). University of Edinburgh.
  7. ^ Jensen, H.; Brass, A.; Berlinsky, A. (1988). "Lattice deformations and plastic flow through bottlenecks in a two-dimensional model for flux pinning in type-II superconductors". Physical Review Letters. 60 (16): 1676–1679. doi:10.1103/PhysRevLett.60.1676. PMID 10038108.
  8. ^ Jensen, H.; Brass, A.; Brechet, Y.; Berlinsky, A. (1988). "Current-voltage characteristics in a two-dimensional model for flux flow in type-II superconductors". Physical Review B. 38 (13): 9235–9237. doi:10.1103/PhysRevB.38.9235.
  9. ^ Scott, J. E.; Cummings, C.; Brass, A.; Chen, Y. (1991). "Secondary and tertiary structures of hyaluronan in aqueous solution, investigated by rotary shadowing-electron microscopy and computer simulation. Hyaluronan is a very efficient network-forming polymer". The Biochemical Journal. 274 (Pt 3): 699–705. doi:10.1042/bj2740699. PMC 1149968. PMID 2012600.
  10. ^ Tuckwell, D. S.; Brass, A.; Humphries, M. J. (1992). "Homology modelling of integrin EF-hands. Evidence for widespread use of a conserved cation-binding site". The Biochemical Journal. 285 (Pt 1): 325–331. doi:10.1042/bj2850325. PMC 1132784. PMID 1322124.
  11. ^ Lord, P. W.; Stevens, R. D.; Brass, A.; Goble, C. A. (2003). "Investigating semantic similarity measures across the Gene Ontology: The relationship between sequence and annotation". Bioinformatics. 19 (10): 1275–1283. doi:10.1093/bioinformatics/btg153. PMID 12835272.
  12. ^ Taylor, C. F.; Paton, N. W.; Garwood, K. L.; Kirby, P. D.; Stead, D. A.; Yin, Z.; Deutsch, E. W.; Selway, L.; Walker, J.; Riba-Garcia, I.; Mohammed, S.; Deery, M. J.; Howard, J. A.; Dunkley, T.; Aebersold, R.; Kell, D. B.; Lilley, K. S.; Roepstorff, P.; Yates Jr, J. R.; Brass, A.; Brown, A. J. P.; Cash, P.; Gaskell, S. J.; Hubbard, S. J.; Oliver, S. G. (2003). "A systematic approach to modeling, capturing, and disseminating proteomics experimental data". Nature Biotechnology. 21 (3): 247–254. doi:10.1038/nbt0303-247. PMID 12610571.
  13. ^ Goble, C. A.; Stevens, R.; Ng, G.; Bechhofer, S.; Paton, N. W.; Baker, P. G.; Peim, M.; Brass, A. (2001). "Transparent access to multiple bioinformatics information sources" (PDF). IBM Systems Journal. 40 (2): 532–551. doi:10.1147/sj.402.0532.
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