Proteopedia: Difference between revisions
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'''Proteopedia''' is a [[wiki]], 3D encyclopedia of [[protein]]s and other [[molecule]]s.<ref name="pmid18673581">{{cite journal | author = Hodis E, Prilusky J, Martz E, Silman I, Moult J, Sussman JL | title = Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules | journal = Genome Biol. | volume = 9 | issue = 8 | pages = R121 | year = 2008 | pmid = 18673581 | pmc = 2575511 | doi = 10.1186/gb-2008-9-8-r121 | url = | issn = }}</ref><ref name="pmid19117028">{{cite journal | author = Martz E | title = Proteopedia.Org: a scientific "Wiki" bridging the rift between 3D structure and function of biomacromolecules | journal = Biopolymers | volume = 92 | issue = 1 | pages = 76–7 | year = 2009 | pmid = 19117028 | doi = 10.1002/bip.21126 | url = | issn = }}</ref><ref name="Hodis_2010">{{cite journal | author = Hodis E, Prilusky J, Sussman JL|title= Proteopedia: A collaborative, virtual 3D web-resource for protein and biomolecule structure and function | journal = Biochem. Mol. Biol. Educ. | year = 2010 | volume = 38 | issue = 5 | pages = 341–2 | doi=10.1002/bmb.20431 }}</ref> The site contains a page for every entry in the [[Protein Data Bank]] (>77,000 pages), as well as pages that are more descriptive of protein structures in general such as [[acetylcholinesterase]],<ref name="urlAcetylcholinesterase, life in 3D">{{cite web | url = http://www.proteopedia.org/wiki/index.php/Acetylcholinesterase | title = Acetylcholinesterase | author = | authorlink = | coauthors = | date = | format = | work = | publisher = Proteopedia | pages = | language = | archiveurl = | archivedate = | quote = | accessdate = }}</ref> [[hemoglobin]],<ref name="urlHemoglobin - Proteopedia, life in 3D">{{cite web | url = http://www.proteopedia.org/wiki/index.php/Hemoglobin | title = Hemoglobin | author = | authorlink = | coauthors = | date = | format = | work = | publisher = Proteopedia | pages = | language = | archiveurl = | archivedate = | quote = | accessdate = }}</ref> and the [[photosystem II]]<ref name="urlPhotosystem II - Proteopedia, life in 3D">{{cite web | url = http://www.proteopedia.org/wiki/index.php/Photosystem_II | title = Photosystem II | author = | authorlink = | coauthors = | date = | format = | work = | publisher = Proteopedia | pages = | language = | archiveurl = | archivedate = | quote = | accessdate = }}</ref> with a [[Jmol]] view that highlights functional sites and [[ligands]]. It employs a scene-authoring tool so that users do not have to learn Jmol script language to create customized molecular scenes. Custom scenes are easily attached to "green links" in descriptive text that display those scenes in Jmol. A web browser is all that is needed to access the site and the 3D information, i.e. there are no downloadable viewers required to install and run. All user-added content is free and covered by the [[GNU Free Documentation License]]. |
'''Proteopedia''' is a [[wiki]], 3D encyclopedia of [[protein]]s and other [[molecule]]s.<ref name="pmid18673581">{{cite journal | author = Hodis E, Prilusky J, Martz E, Silman I, Moult J, Sussman JL | title = Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules | journal = Genome Biol. | volume = 9 | issue = 8 | pages = R121 | year = 2008 | pmid = 18673581 | pmc = 2575511 | doi = 10.1186/gb-2008-9-8-r121 | url = | issn = }}</ref><ref name="pmid19117028">{{cite journal | author = Martz E | title = Proteopedia.Org: a scientific "Wiki" bridging the rift between 3D structure and function of biomacromolecules | journal = Biopolymers | volume = 92 | issue = 1 | pages = 76–7 | year = 2009 | pmid = 19117028 | doi = 10.1002/bip.21126 | url = | issn = }}</ref><ref name="Hodis_2010">{{cite journal | author = Hodis E, Prilusky J, Sussman JL|title= Proteopedia: A collaborative, virtual 3D web-resource for protein and biomolecule structure and function | journal = Biochem. Mol. Biol. Educ. | year = 2010 | volume = 38 | issue = 5 | pages = 341–2 | doi=10.1002/bmb.20431 }}</ref> The site contains a page for every entry in the [[Protein Data Bank]] (>77,000 pages), as well as pages that are more descriptive of protein structures in general such as [[acetylcholinesterase]],<ref name="urlAcetylcholinesterase, life in 3D">{{cite web | url = http://www.proteopedia.org/wiki/index.php/Acetylcholinesterase | title = Acetylcholinesterase | author = | authorlink = | coauthors = | date = | format = | work = | publisher = Proteopedia | pages = | language = | archiveurl = | archivedate = | quote = | accessdate = }}</ref> [[hemoglobin]],<ref name="urlHemoglobin - Proteopedia, life in 3D">{{cite web | url = http://www.proteopedia.org/wiki/index.php/Hemoglobin | title = Hemoglobin | author = | authorlink = | coauthors = | date = | format = | work = | publisher = Proteopedia | pages = | language = | archiveurl = | archivedate = | quote = | accessdate = }}</ref> and the [[photosystem II]]<ref name="urlPhotosystem II - Proteopedia, life in 3D">{{cite web | url = http://www.proteopedia.org/wiki/index.php/Photosystem_II | title = Photosystem II | author = | authorlink = | coauthors = | date = | format = | work = | publisher = Proteopedia | pages = | language = | archiveurl = | archivedate = | quote = | accessdate = }}</ref> with a [[Jmol]] view that highlights functional sites and [[ligands]]. It employs a scene-authoring tool so that users do not have to learn Jmol script language to create customized molecular scenes. Custom scenes are easily attached to "green links" in descriptive text that display those scenes in Jmol. A web browser is all that is needed to access the site and the 3D information, i.e. there are no downloadable viewers required to install and run. All user-added content is free and covered by the [[GNU Free Documentation License]]. '''Proteopedia''' is hosted at the Israel Structural Proteomics Center at the Weizmann Institute of Science. |
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Proteopedia was the winner of the 2010 award for the best Web-site by [[The Scientist]] magazine.<ref name="The_Scientist_2010">{{cite journal | author = Luiggi C|title=Web Gems Introducing the winners of the first annual Labbies, our prizes for the best Web-based multimedia by labs: Website Winner:Proteopedia | journal = The Scientist | year = 2010 | month = September | volume = 24 | issue = 9 | pages =47 | url = http://www.the-scientist.com/2010/9/1/47/1/#website | quote = Very absorbing. Kept me looking and playing (and learning) with it for a long time. Very informative and a good resource.}}</ref> |
Proteopedia was the winner of the 2010 award for the best Web-site by [[The Scientist]] magazine.<ref name="The_Scientist_2010">{{cite journal | author = Luiggi C|title=Web Gems Introducing the winners of the first annual Labbies, our prizes for the best Web-based multimedia by labs: Website Winner:Proteopedia | journal = The Scientist | year = 2010 | month = September | volume = 24 | issue = 9 | pages =47 | url = http://www.the-scientist.com/2010/9/1/47/1/#website | quote = Very absorbing. Kept me looking and playing (and learning) with it for a long time. Very informative and a good resource.}}</ref> |
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Revision as of 09:42, 12 November 2011
Type of site | Online encyclopedia |
|---|---|
| Available in | English |
| Created by | Joel L. Sussman, Eran Hodis, and Jaime Prilusky |
| URL | proteopedia.org |
| Commercial | No |
Proteopedia is a wiki, 3D encyclopedia of proteins and other molecules.[1][2][3] The site contains a page for every entry in the Protein Data Bank (>77,000 pages), as well as pages that are more descriptive of protein structures in general such as acetylcholinesterase,[4] hemoglobin,[5] and the photosystem II[6] with a Jmol view that highlights functional sites and ligands. It employs a scene-authoring tool so that users do not have to learn Jmol script language to create customized molecular scenes. Custom scenes are easily attached to "green links" in descriptive text that display those scenes in Jmol. A web browser is all that is needed to access the site and the 3D information, i.e. there are no downloadable viewers required to install and run. All user-added content is free and covered by the GNU Free Documentation License. Proteopedia is hosted at the Israel Structural Proteomics Center at the Weizmann Institute of Science.
Proteopedia was the winner of the 2010 award for the best Web-site by The Scientist magazine.[7]
References
- ^ Hodis E, Prilusky J, Martz E, Silman I, Moult J, Sussman JL (2008). "Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules". Genome Biol. 9 (8): R121. doi:10.1186/gb-2008-9-8-r121. PMC 2575511. PMID 18673581.
{{cite journal}}: CS1 maint: multiple names: authors list (link) CS1 maint: unflagged free DOI (link) - ^ Martz E (2009). "Proteopedia.Org: a scientific "Wiki" bridging the rift between 3D structure and function of biomacromolecules". Biopolymers. 92 (1): 76–7. doi:10.1002/bip.21126. PMID 19117028.
- ^ Hodis E, Prilusky J, Sussman JL (2010). "Proteopedia: A collaborative, virtual 3D web-resource for protein and biomolecule structure and function". Biochem. Mol. Biol. Educ. 38 (5): 341–2. doi:10.1002/bmb.20431.
{{cite journal}}: CS1 maint: multiple names: authors list (link) - ^ "Acetylcholinesterase". Proteopedia.
{{cite web}}: Cite has empty unknown parameter:|coauthors=(help) - ^ "Hemoglobin". Proteopedia.
{{cite web}}: Cite has empty unknown parameter:|coauthors=(help) - ^ "Photosystem II". Proteopedia.
{{cite web}}: Cite has empty unknown parameter:|coauthors=(help) - ^ Luiggi C (2010). "Web Gems Introducing the winners of the first annual Labbies, our prizes for the best Web-based multimedia by labs: Website Winner:Proteopedia". The Scientist. 24 (9): 47.
Very absorbing. Kept me looking and playing (and learning) with it for a long time. Very informative and a good resource.
{{cite journal}}: Unknown parameter|month=ignored (help)
See also
External links
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