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Journal to wiki

Legacy materials

Antonie van Leeuwenhoek's 1677 report on the discovery of muscle fibres.^[1]

Original description by Charles Thomas Brues (1924) of the parasitic phorid fly species Apocephalus borealis,^[2] which has since been suggested^[3] as a possible vector promoting the spread of the pathogens responsible for colony collapse disorder in worker bees.

The field notes of Junius Henderson are discussed and semantically annotated in a new study^[4] that also provides an introduction to Wikisource and its WikiProject Field Notes as a citizen science project.

Examples of scientific documents in the Public Domain and available via Wikimedia Commons.

Category:Historical papers from the Philosophical Transactions of the Royal Society of London

RNA Biology

Butler, D. (2008). "Publish in Wikipedia or perish: Journal to require authors to post in the free online encyclopaedia". Nature. doi:10.1038/news.2008.1312.
SmY RNA written by authors and reviewed by reviewers of

Jones, T. A.; Otto, W.; Marz, M.; Eddy, S. R.; Stadler, P. F. (2009). "A survey of nematode SmY RNAs". RNA Biology. 6 (1): 5–8. doi:10.4161/rna.6.1.7634. PMID 19106623. S2CID 32095624.

“

promising method for outreach, connecting the scientific world with the public that usually pays for the research

”

— Professor William J. Wedemeyer, wikinews:RNA journal submits articles to Wikipedia

Authors get a publication
Wikipedia gets new expert-authored and expert-reviewed content
Journal gets citation from Wikipedia

Cite-o-meter stats for publisher

Manual transfer from journal to wiki

ZooKeys

Penev, L.; Hagedorn, G.; Mietchen, D.; Georgiev, T.; Stoev, P.; Sautter, G.; Agosti, D.; Plank, A.; Balke, M. (2011). "Interlinking journal and wiki publications through joint citation: Working examples from ZooKeys and Plazi on Species-ID". ZooKeys (90): 1–12. doi:10.3897/zookeys.90.1369. PMC 3084489. PMID 21594104.^[5]

Uses neither Wikipedia nor Wikispecies but Species ID, mainly because of WP:NOR

Authors get a publication
Species ID gets new expert-authored and expert-reviewed content
Automated transfer of taxon treatments from journal to wiki

PLoS Computational Biology

Signpost coverage

Review articles drafted according to the guidelines of both the journal PLoS Computational Biology and the English Wikipedia
One already published:

Source	Copy

Bliven & Prlić (2012),^[6] CC BY	Wikipedia: Circular permutation in proteins, CC BY-SA

Several under way

Authors get a publication
Wikipedia gets new expert-authored and expert-reviewed content
Journal gets citation from Wikipedia

Cite-o-meter stats for publisher

Manual transfer of taxon treatments from journal to wiki

Further journals

Modest stimulus funding available for journals wishing to try it out themselves

PubMed Central

JATS-to-MediaWiki

Wiki to journal

Mietchen et al. (2011)^[7]

Wikipedia:WikiProject Medicine/Collaborative publication: from WP:MED to Open Medicine

Dengue fever

Source	Copy

Wikipedia: Screenshot of Dengue fever (oldid=502061566) CC BY-SA	Wikipedia: Dengue fever article (oldid=502061566) as exported to PDF via the Pdf Export extension. CC BY-SA. Foreseen for publication in Open Medicine.

On-wiki journal

Wiki journal

References

^ Leewenhoecks, M. (1677). "Mr. Leewenhoecks Letter Written to the Publisher from Delff the 14th of May 1677, Concerning the Observations by him Made of the Carneous Fibres of a Muscle, and the Cortical and Medullar Part of the Brain; as Also of Moxa and Cotton". Philosophical Transactions of the Royal Society of London. 12 (133–142): 899–905. doi:10.1098/rstl.1677.0027.
^ Brues, C. T. (1924). "Notes on Some New England Phoridæ (Diptera)". Psyche: A Journal of Entomology. 31: 41–44. doi:10.1155/1924/42175.
^ Core, A.; Runckel, C.; Ivers, J.; Quock, C.; Siapno, T.; Denault, S.; Brown, B.; Derisi, J.; Smith, C. D.; Hafernik, J. (2012). Raine, Nigel E. (ed.). "A New Threat to Honey Bees, the Parasitic Phorid Fly Apocephalus borealis". PLOS ONE. 7 (1): e29639. Bibcode:2012PLoSO...729639C. doi:10.1371/journal.pone.0029639. PMC 3250467. PMID 22235317.
^ Thomer, A.; Vaidya, G.; Guralnick, R.; Bloom, D.; Russell, L. (2012). "From documents to datasets: A MediaWiki-based method of annotating and extracting species observations in century-old field notebooks". ZooKeys (209): 235–53. doi:10.3897/zookeys.209.3247. PMC 3406479. PMID 22859891.
^ Penev, L.; Hagedorn, G.; Mietchen, D.; Georgiev, T.; Stoev, P.; Sautter, G.; Agosti, D.; Plank, A.; Balke, M. (2011). "Interlinking journal and wiki publications through joint citation: Working examples from ZooKeys and Plazi on Species-ID". ZooKeys (90): 1–12. doi:10.3897/zookeys.90.1369. PMC 3084489. PMID 21594104.
^ Bliven, S.; Prlić, A. (2012). Wodak, Shoshana (ed.). "Circular Permutation in Proteins". PLOS Computational Biology. 8 (3): e1002445. Bibcode:2012PLSCB...8E2445B. doi:10.1371/journal.pcbi.1002445. PMC 3320104. PMID 22496628.{{cite journal}}: CS1 maint: unflagged free DOI (link)
^ Mietchen D, Hagedorn G, Förstner KU, Kubke MF, Koltzenburg C, Hahnel M, Penev L (2011), "Wikis in scholarly publishing", Information Services and Use, 31 (1–2), IOS Press: 53–59, doi:10.3233/ISU-2011-0621, retrieved 2012-07-23{{citation}}: CS1 maint: multiple names: authors list (link) Versioned wiki page: 2012-04-13, version 23217, http://species-id.net/w/index.php?title=Wikis_in_scholarly_publishing&oldid=23217 , contributors (alphabetical order): Konrad Foerstner, Gregor Hagedorn, Mark Hahnel, Claudia Koltzenburg, M Fabiana Kubke, Daniel Mietchen, Stephen Thorpe. Available under a Creative Commons Attribution License.

[Leeuwenhoek1677-1] Leewenhoecks, M. (1677). "Mr. Leewenhoecks Letter Written to the Publisher from Delff the 14th of May 1677, Concerning the Observations by him Made of the Carneous Fibres of a Muscle, and the Cortical and Medullar Part of the Brain; as Also of Moxa and Cotton". Philosophical Transactions of the Royal Society of London. 12 (133–142): 899–905. doi:10.1098/rstl.1677.0027.

[Brues1924-2] Brues, C. T. (1924). "Notes on Some New England Phoridæ (Diptera)". Psyche: A Journal of Entomology. 31: 41–44. doi:10.1155/1924/42175.

[Core2012-3] Core, A.; Runckel, C.; Ivers, J.; Quock, C.; Siapno, T.; Denault, S.; Brown, B.; Derisi, J.; Smith, C. D.; Hafernik, J. (2012). Raine, Nigel E. (ed.). "A New Threat to Honey Bees, the Parasitic Phorid Fly Apocephalus borealis". PLOS ONE. 7 (1): e29639. Bibcode:2012PLoSO...729639C. doi:10.1371/journal.pone.0029639. PMC 3250467. PMID 22235317.

[Thomer2012-4] Thomer, A.; Vaidya, G.; Guralnick, R.; Bloom, D.; Russell, L. (2012). "From documents to datasets: A MediaWiki-based method of annotating and extracting species observations in century-old field notebooks". ZooKeys (209): 235–53. doi:10.3897/zookeys.209.3247. PMC 3406479. PMID 22859891.

[Penev2011-5] Penev, L.; Hagedorn, G.; Mietchen, D.; Georgiev, T.; Stoev, P.; Sautter, G.; Agosti, D.; Plank, A.; Balke, M. (2011). "Interlinking journal and wiki publications through joint citation: Working examples from ZooKeys and Plazi on Species-ID". ZooKeys (90): 1–12. doi:10.3897/zookeys.90.1369. PMC 3084489. PMID 21594104.

[Bliven2012-6] Bliven, S.; Prlić, A. (2012). Wodak, Shoshana (ed.). "Circular Permutation in Proteins". PLOS Computational Biology. 8 (3): e1002445. Bibcode:2012PLSCB...8E2445B. doi:10.1371/journal.pcbi.1002445. PMC 3320104. PMID 22496628.{{cite journal}}: CS1 maint: unflagged free DOI (link)

[Mietchen2011Information_Services_and_Use31-7] Mietchen D, Hagedorn G, Förstner KU, Kubke MF, Koltzenburg C, Hahnel M, Penev L (2011), "Wikis in scholarly publishing", Information Services and Use, 31 (1–2), IOS Press: 53–59, doi:10.3233/ISU-2011-0621, retrieved 2012-07-23{{citation}}: CS1 maint: multiple names: authors list (link) Versioned wiki page: 2012-04-13, version 23217, http://species-id.net/w/index.php?title=Wikis_in_scholarly_publishing&oldid=23217 , contributors (alphabetical order): Konrad Foerstner, Gregor Hagedorn, Mark Hahnel, Claudia Koltzenburg, M Fabiana Kubke, Daniel Mietchen, Stephen Thorpe. Available under a Creative Commons Attribution License.

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