Entropy of network ensembles
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- Comment: Only one of the sources is an independent, reliable source (i.e. not written by the person that discovered it), and that source doesn't mention this concept. Also, the introduction needs to have more context on "network ensembles." Perhaps consider merging your article into one of the many information theory articles that already exists, which you can find here: Category:Entropy and information. Sam-2727 (talk) 16:53, 30 April 2020 (UTC)
A set of networks that satisfy given structural characteristics can be treated as a network ensemble[1]. The entropy of a network ensemble measures the level of the order or uncertainty of a network ensemble, was first brought up by Ginestra Bianconi in 2007[2]. Basically, the entropy is the logarithm of the number of graphs[3]. To clarify, entropy can also be definied in one network. Basin entropy is the logarithm of the attractors in one Boolean network[4].
Employing statistical mechanics approaches, the complexity, uncertainty, and randomness of networks are able to be described by network ensembles with different types of constraints[5].
Gibbs and Shannon entropy
By analogy to statistical mechanics, microcanonical ensembles and canonical ensembles of networks are introduced for the implementation. A partition function Z of an ensemble can be defined as
where is the constraint, and () are the elements in the adjacency matrix, if and only if there is a link between node i and node j. is a step function with if , and if . The auxiliary fields and have been introduced as analogy to the bath in classical mechanics.
For simple undirected networks, the partition function can be simplified as[6]
where , is the index of the weight, and for a simple network .
Microcanonical ensembles and canonical ensembles are demonstrated with simple undirected networks.
For a microcanonical ensemble, the Gibbs entropy is defined by
where indicates the cardinality of the ensemble, i.e., the total number of networks in the ensemble.
The probability of having a link between nodes i and j, with weight is given by
For a canonical ensemble, the entropy is presented in the form of a Shannon entropy
Relation between Gibbs and Shannon entropy
Network ensemble with given number of nodes and links , and its conjugate-canonical ensemble are characterized as microcanonical and canonical ensembles and they have Gibbs entropy and the Shannon entropy S, respectively. The Gibbs entropy in the ensemble is given by.[7]
For ensemble,
Inserting into the Shannon entropy[6],
The relation indicates that the Gibbs entropy and the Shannon entropy per node S/N of random graphs are equal in the thermodynamic limit .
Von Neumann entropy
Von Neumann entropy is the extension of the classical Gibbs entropy in the quantum context. This entropy is constructed from a density matrix with the expression of Laplacian matrix L associated with the network. The average von Neumann entropy of an ensemble is calculated as[8]
For random network ensemble , the relation between and is nonmonotonic when the average connectivity is varied.
For canonical power-law network ensembles, the two entropies are linearly related[6]
Networks with given expected degree sequences suggest that, heterogeneity in the expected degree distribution implies an equivalence between a quantum and a classical description of networks, which respectively corresponds to the von Neumann and the Shannon entropy[9].
Von Neumann entropy can also be calculated in multilayer networks with tensorial approach[10].
See also
References
- ^ Levin, E.; Tishby, N.; Solla, S.A. (October 1990). "A statistical approach to learning and generalization in layered neural networks". Proceedings of the IEEE. 78 (10): 1568–1574. doi:10.1109/5.58339. ISSN 1558-2256.
- ^ "The entropy of randomized network ensembles". EPL (Europhysics Letters). 81 (2). 10 December 2007. doi:10.1209/0295-5075/81/28005/meta (inactive 2020-05-11). ISSN 0295-5075.
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: CS1 maint: DOI inactive as of May 2020 (link) - ^ Menichetti, Giulia; Remondini, Daniel (2014). "Entropy of a network ensemble: definitions and applications to genomic data". Theoretical Biology Forum. 107 (1–2): 77–87. ISSN 0035-6050. PMID 25936214.
- ^ Krawitz, Peter; Shmulevich, Ilya (27 September 2007). "Entropy of complex relevant components of Boolean networks". Physical Review E. 76 (3): 036115. doi:10.1103/PhysRevE.76.036115.
- ^ Bianconi, Ginestra (27 March 2009). "Entropy of network ensembles". Physical Review E. 79 (3): 036114. arXiv:0802.2888. Bibcode:2009PhRvE..79c6114B. doi:10.1103/PhysRevE.79.036114. PMID 19392025.
- ^ a b c Anand, Kartik; Bianconi, Ginestra (13 October 2009). "Entropy measures for networks: Toward an information theory of complex topologies". Physical Review E. 80 (4): 045102. arXiv:0907.1514. Bibcode:2009PhRvE..80d5102A. doi:10.1103/PhysRevE.80.045102. PMID 19905379.
- ^ Bogacz, Leszek; Burda, Zdzisław; Wacław, Bartłomiej (1 July 2006). "Homogeneous complex networks". Physica A: Statistical Mechanics and Its Applications. 366: 587–607. arXiv:cond-mat/0502124. Bibcode:2006PhyA..366..587B. doi:10.1016/j.physa.2005.10.024. ISSN 0378-4371.
- ^ Du, Wenxue; Li, Xueliang; Li, Yiyang; Severini, Simone (30 December 2010). "A note on the von Neumann entropy of random graphs". Linear Algebra and its Applications. 433 (11): 1722–1725. doi:10.1016/j.laa.2010.06.040. ISSN 0024-3795.
- ^ Anand, Kartik; Bianconi, Ginestra; Severini, Simone (18 March 2011). "Shannon and von Neumann entropy of random networks with heterogeneous expected degree". Physical Review E. 83 (3): 036109. arXiv:1011.1565. Bibcode:2011PhRvE..83c6109A. doi:10.1103/PhysRevE.83.036109. PMID 21517560.
- ^ De Domenico, Manlio; Solé-Ribalta, Albert; Cozzo, Emanuele; Kivelä, Mikko; Moreno, Yamir; Porter, Mason A.; Gómez, Sergio; Arenas, Alex (4 December 2013). "Mathematical Formulation of Multilayer Networks". Physical Review X. 3 (4): 041022. arXiv:1307.4977. Bibcode:2013PhRvX...3d1022D. doi:10.1103/PhysRevX.3.041022.
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