Pancrustacea
 | Parts of this article (those related to documentation) need to be updated. (June 2022) |
| Pancrustacea Temporal range:
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| Sally Lightfoot crab (Grapsus grapsus). | |
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| Fruit fly (Drosophila melanogaster). | |
Scientific classification 
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| Domain: | Eukaryota |
| Kingdom: | Animalia |
| Phylum: | Arthropoda |
| Clade: | Mandibulata |
| Clade: | Pancrustacea Zrzavý & Štys, 1997 |
| Superclasses[1] and extinct orders | |
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| Synonyms | |
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Tetraconata Dohle, 2001 | |
Pancrustacea is the clade that comprises all crustaceans, including hexapods (insects and relatives).[2] This grouping is contrary to the Atelocerata hypothesis, in which Hexapoda and Myriapoda are sister taxa, and Crustacea are only more distantly related. As of 2010, the Pancrustacea taxon was considered well accepted, with most studies recovering Hexapoda within Crustacea.[3] The clade has also been called Tetraconata, referring to having four cone cells in the ommatidia.[4] This name is preferred by some scientists as a means of avoiding confusion with the use of "pan-" to indicate a clade that includes a crown group and all of its stem group representatives.[5]
Molecular studies
A monophyletic Pancrustacea has been supported by several molecular studies,[6][7][8][9][10] in most of which the subphylum Crustacea is paraphyletic with regard to hexapods (that is, that hexapods, including insects, are derived from crustacean ancestors).
The evidence for this clade derives from molecular data and morphological characteristics. The molecular data consists of comparisons of nuclear ribosomal RNA genes, mitochondrial ribosomal RNA genes, and protein coding genes. The morphological data consists of ommatidial structures (see arthropod eye), the presence of neuroblasts, and the form and style of axonogenesis by pioneer neurons.[11][12]
Regier et al. (2005)
In a 2005 study of nuclear genomes Regier et al. suggest that Hexapoda is most closely related to Branchiopoda and Cephalocarida + Remipedia, thereby hexapods are "terrestrial crustaceans", thus supporting the Pancrustacea hypothesis that maxillopods are not monophyletic (in the following cladograms Maxillopoda subclasses are highlighted). In addition, there appeared some evidence against the Ostracoda monophyly: that Ostracoda subclass Podocopa may form a clade with Branchiura.[6]
| Cladogram following Regier et al. (2005).[6] |
Regier et al. (2010)
A 2010 study of nuclear genomes (Regier et al.) strongly supports Pancrustacea and strongly favour Mandibulata (Myriapoda + Pancrustacea) over Paradoxopoda (Myriapoda + Chelicerata). According to this study, Pancrustacea is divided into four lineages: Oligostraca (Ostracoda, Mystacocarida, Branchiura, Pentastomida), Vericrustacea (Malacostraca, Thecostraca, Copepoda, Branchiopoda), Xenocarida (Cephalocarida, Remipedia) and Hexapoda, with Xenocarida as a sister group to the Hexapoda (comprising "Miracrustacea").[7]
New clades proposed by Regier et al. are:
- Vericrustacea ("true crustaceans") — Branchiopoda, Copepoda, Malacostraca, Thecostraca;
- Multicrustacea ("numerous crustaceans") — Copepoda, Malacostraca, Thecostraca;
- Communostraca ("common shelled ones") — Malacostraca, Thecostraca;
- Miracrustacea ("surprising crustaceans") — Cephalocarida, Remipedia, Hexapoda;
- Xenocarida ("strange shrimp") — Cephalocarida, Remipedia.
Of these proposed clades, only Multicrustacea was confirmed in later molecular studies.
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| Cladogram following Regier et al. (2010).[7] |
von Reumont et al. (2012)
In a 2012 molecular study, von Reumont et al. challenge the monophyly of Vericrustacea: they present four versions of Pancrustacea cladogram (figures 1–4), and in all four figures Remipedia is a sister group to Hexapoda, and Branchiopoda is a sister group to (Remipedia + Hexapoda). Thus, their data strongly suggest that Branchiopoda is more closely related to Hexapoda and Remipedia than to Multicrustacea. Based on these data, they propose the following scenario of evolution of Branchiopoda, Remipedia and Hexapoda: under the impact of predatory fishes their common ancestors go to the littoral zone, then ancestors of Branchiopoda go to the ephemeral freshwater habitat, whereas ancestors of Remipedia go to the anchialine cave, and ancestors of Hexapoda go to the land.[13]
Jondeung et al. (2012)
Another molecular study (of mitochondrial genomes), conducted in 2012 by Jondeung et al., strongly support monophyletic Pancrustacea and places Malacostraca + Entomostraca and Branchiopoda as the sister clade to Hexapoda and places Cirripedia + Remipedia as a basal lineage of Pancrustacea.[14]
Oakley et al. (2013)
In 2013 combined study of morphology, including fossils, and molecular data, including expressed sequence tag, mitochondrial genome, nuclear genome, and ribosomal DNA data Oakley et al. obtained support for three pancrustacean clades: Oligostraca (Ostracoda, Mystacocarida, Branchiura, Pentastomida), Multicrustacea (Copepoda, Thecostraca, Malacostraca) and a clade they refer to as Allotriocarida (Branchiopoda, Cephalocarida, Remipedia, Hexapoda), as well as for monophyly of Ostracoda. Within Multicrustacea they obtained support for a clade they suggest the name Hexanauplia: Thecostraca + Copepoda. Relations within Allotriocarida remain uncertain: sister taxon to Hexapoda is either Remipedia, or the clade Branchiopoda + Cephalocarida, however, authors are inclined to the first version (see "Conclusion", 4), which is also consistent with von Reumont et al. (2012) results.[15][13]
New proposed by Oakley et al. clades are:
- Hexanauplia (refers to six ("hexa-") naupliar molts) — Copepoda, Thecostraca;
- Allotriocarida ("allotrios" is "strange", "carida" is "shrimp") — Cephalocarida, Branchiopoda, Remipedia, Hexapoda.[15]
Note: the Allotriocarida clade was also recovered in 2005 by Regier et al. as Clade #33,[6] but relations within it were different, and they did not choose a name for it.
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| Cladogram following Oakley et al. (2013)[15] |
Rota-Stabelli et al. (2013)
In 2013 Rota-Stabelli et al. used the signal in the 62 protein-coding genes assembled by Regier et al. in 2010 to improve the knowledge of the internal relationship in the Pancrustacea group. This data set infers a highly supported nucleotide tree that is substantially different from the corresponding, but poorly supported, amino acid one. The discrepancy between the nucleotide-based and the amino acids-based trees is caused by substitutions within synonymous codon families (especially those of serine-TCN and AGY): different arthropod lineages are differentially biased in their usage of serine, arginine, and leucine synonymous codons, and the serine bias is correlated with the topology derived from the nucleotides, but not the amino acids. The authors suggest that a parallel, partially compositionally driven, synonymous codon-usage bias affects the nucleotide topology. As substitutions between serine codon families can proceed through threonine or cysteine intermediates, amino acid data sets might also be affected by the serine codon-usage bias. The analyses suggests that a Dayhoff recoding strategy would partially ameliorate the effects of such bias. Although amino acids provide an alternative hypothesis of pancrustacean relationships, neither the nucleotides nor the amino acids version of this data set bring enough genuine phylogenetic information to robustly resolve the relationships within group, which should still be considered unresolved. However the amino acid tree seems to be more likely since it appears to be free from the synonymous codon-family bias affecting the nucleotide one. Most of the inferences based on amino acids sequences support a clade which includes Branchiopoda, Remipedia, Copepoda and Hexapoda (group A). Using the best amino acids substitution model, CATGTR, also Cephalocarida falls inside this group. In all the analyses group A (with or without Cephalocarida) is sister-group of a clade composed by Malacostraca, Oligostraca and Thecostraca (group B).[16]
The following image shows the tree resulting from the Dayhoff recoding.
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Lozano-Fernandez et al. (2019)
The relationship of Hexapoda and the crustacean classes is shown in the following phylogenetic tree, which shows Allotriocarida, along with Oligostraca and Multicrustacea, as the three main divisions of subphylum Pancrustacea, embracing the traditional crustaceans and the hexapods (including insects).[1]
| Pancrustacea | |
Position of Tantulocarida
According to Petrunina A.S. and Kolbasov G.A., the sixth subclass of Maxillopoda Tantulocarida may lie within Thecostraca, forming a clade with thecostracan infraclass Cirripedia (if so, Thecostraca excluding Tantulocarida is paraphyletic):[17][18]
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| Thecostraca cladogram following Petrunina (2012), page 19, picture 8[18] |
See also
References
- ^ a b Lozano-Fernandez, Jesus; Giacomelli, Mattia; Fleming, James F.; Chen, Albert; Vinther, Jakob; Thomsen, Philip Francis; Glenner, Henrik; Palero, Ferran; Legg, David A.; Iliffe, Thomas M.; Pisani, Davide; Olesen, Jørgen (2019). "Pancrustacean Evolution Illuminated by Taxon-Rich Genomic-Scale Data Sets with an Expanded Remipede Sampling". Genome Biology and Evolution. 11 (8): 2055–2070. doi:10.1093/gbe/evz097. PMC 6684935. PMID 31270537.
- ^ J. Zrzavý & P. Štys (May 1997). "The basic body plan of arthropods: insights from evolutionary morphology and developmental biology". Journal of Evolutionary Biology. 10 (3): 353–367. doi:10.1046/j.1420-9101.1997.10030353.x.
- ^ Omar Rota-Stabelli; Ehsan Kayal; Dianne Gleeson; Jennifer Daub; Jeffrey L. Boore; Maximilian J. Telford; Davide Pisani; Mark Blaxter; Dennis V. Lavrov (2010). "Ecdysozoan Mitogenomics: Evidence for a Common Origin of the Legged Invertebrates, the Panarthropoda". Genome Biology and Evolution. 2: 425–440. doi:10.1093/gbe/evq030. PMC 2998192. PMID 20624745. Archived from the original on 2012-07-10.
- ^ W. Dohle (2001). "Are the insects terrestrial crustaceans? A discussion of some new facts and arguments and the proposal of the proper name 'Tetraconata' for the monophyletic unit Crustacea+Hexapoda". Annales de la Société Entomologique de France. 37 (1–2): 85–103.
- ^ Stefan Richter, Ole S. Møller & Christian S. Wirkner (2009). "Advances in Crustacean Phylogenetics" (PDF). Arthropod Systematics & Phylogeny. 67 (2): 275–286. Archived from the original (PDF) on 2017-10-22. Retrieved 2010-12-08.
- ^ a b c d J. C. Regier; J. W. Shultz; R. E. Kambic (22 February 2005). "Pancrustacean phylogeny: hexapods are terrestrial crustaceans and maxillopods are not monophyletic". Proceedings of the Royal Society B. 272 (1561): 395–401. doi:10.1098/rspb.2004.2917. PMC 1634985. PMID 15734694.
- ^ a b c Jerome C. Regier; Jeffrey W. Shultz; Andreas Zwick; April Hussey; Bernard Ball; Regina Wetzer; Joel W. Martin; Clifford W. Cunningham (25 February 2010). "Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences". Nature. 463 (7284): 1079–1083. doi:10.1038/nature08742. PMID 20147900. S2CID 4427443.
- ^ Jeffrey W. Shultz & Jerome C. Regier (22 May 2000). "Phylogenetic analysis of arthropods using two nuclear protein-encoding genes supports a crustacean + hexapod clade" (PDF). Proceedings of the Royal Society B. 267 (1447): 1011–1019. doi:10.1098/rspb.2000.1104. PMC 1690640. PMID 10874751.
- ^ Gonzalo Giribet & Carles Ribera (June 2000). "A review of arthropod phylogeny: new data based on ribosomal DNA sequences and direct character optimization". Cladistics. 16 (2): 204–231. doi:10.1111/j.1096-0031.2000.tb00353.x. PMID 34902954. S2CID 84370269.
- ^ Francesco Nardi; Giacomo Spinsanti; Jeffrey L. Boore; Antonio Carapelli; Romano Dallai; Francesco Frati (21 March 2003). "Hexapod origins: monophyletic or paraphyletic?" (PDF). Science. 299 (5614): 1887–1889. doi:10.1126/science.1078607. PMID 12649480. S2CID 38792657.[permanent dead link]
- ^ Stefan Richter (2002). "The Tetraconata concept: hexapod-crustacean relationships and the phylogeny of Crustacea". Organisms Diversity & Evolution. 2 (3): 217–237. doi:10.1078/1439-6092-00048.
- ^ Casey W. Dunn; Andreas Hejnol; David Q. Matus; Kevin Pang; William E. Browne; Stephen A. Smith; Elaine Seaver; Greg W. Rouse; Matthias Obst; Gregory D. Edgecombe; Martin V. Sørensen; Steven H. D. Haddock; Andreas Schmidt-Rhaesa; Akiko Okusu; Reinhardt Møbjerg Kristensen; Ward C. Wheeler; Mark Q. Martindale; Gonzalo Giribet (10 April 2008). "Broad phylogenomic sampling improves resolution of the animal tree of life". Nature. 452 (10): 745–749. doi:10.1038/nature06614. PMID 18322464. S2CID 4397099.
- ^ a b c d e Bjoern M. von Reumont; Ronald A. Jenner; Matthew A. Wills; Emiliano Dell'Ampio; Günther Pass; Ingo Ebersberger; Benjamin Meyer; Stefan Koenemann; Thomas M. Iliffe; Alexandros Stamatakis; Oliver Niehuis; Karen Meusemann; Bernhard Misof (March 2012). "Pancrustacean phylogeny in the light of new phylogenomic data: support for Remipedia as the possible sister group of Hexapoda". Molecular Biology and Evolution. 29 (3): 1031–1045. doi:10.1093/molbev/msr270. PMID 22049065.
- ^ Amnuay Jondeung; Wirangrong Karinthanyakit; Jitlada Kaewkhumsan (December 2012). "The complete mitochondrial genome of the black mud crab, Scylla serrata (Crustacea: Brachyura: Portunidae) and its phylogenetic position among (pan)crustaceans". Molecular Biology Reports. 39 (12): 10921–10937. doi:10.1007/s11033-012-1992-2. PMID 23053985. S2CID 254830063.
- ^ a b c Todd H. Oakley; Joanna M. Wolfe; Annie R. Lindgren; Alexander K. Zaharoff (January 2013). "Phylotranscriptomics to bring the understudied into the fold: monophyletic ostracoda, fossil placement, and pancrustacean phylogeny". Molecular Biology and Evolution. 30 (1): 215–233. doi:10.1093/molbev/mss216. PMID 22977117.
- ^ Omar Rota-Stabelli; Nicolas Lartillot; Nicolas Lartillot; Davide Pisani (1 January 2013). "Serine Codon-Usage Bias in Deep Phylogenomics: Pancrustacean Relationships as case study" (PDF). Systematic Biology. 62 (1): 121–133. doi:10.1093/sysbio/sys077. PMID 22962005.
- ^ Петрунина А.С., Колбасов Г.А. (2011). "Two species of Tantulocarida from the White Sea: what new could they tell us about morphology, anatomy and phylogeny of these minute parasitic crustaceans?" 11th International Conference on Copepoda.
- ^ a b Петрунина Александра Сергеевна. (2012). Микроскопические ракообразные класса Tantulocarida: морфология, анатомия, систематика и филогения.