User:Emkagarise/DNA-deoxyinosine glycosylase/Bibliography

Bibliography

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Bibliography[edit]

McDonald, A.G., Boyce, S. and Tipton, K.F. (2015). Enzyme Classification and Nomenclature. In eLS, John Wiley & Sons, Ltd (Ed.).^[1]

Overview of the Enzyme Nomenclature and Classification System used to provide individual ID to enzymes.

Kosaka, Hiromichi, et al. "Crystal structure of family 5 uracil-DNA glycosylase bound to DNA." Journal of molecular biology 373.4 (2007): 839-850.^[2]

Structural data and biochemical characterization of UDG from Thermus thermophilus.

Pang, Panjiao, et al. "SMUG2 DNA glycosylase from Pedobacter heparinus as a new subfamily of the UDG superfamily." Biochemical Journal 474.6 (2017): 923-938.

Structural Data, biochemical characterization, mutational studies, and enzymatic assay analysis of new UDG subfamily from Pedobacter heparinus.^[3]

Xia, Bo, et al. "Specificity and catalytic mechanism in family 5 uracil DNA glycosylase." Journal of Biological Chemistry 289.26 (2014): 18413-18426.^[4]

Overview of UDGb from family 5 of the uracil DNA glycosylase (UDG) superfamily from Thermus thermophilus HB8. Analysis of substrate specificity, mutational studies, molecular modeling, and activity.

Schormann, Norbert, Robert Ricciardi, and Debasish Chattopadhyay. "Uracil‐DNA glycosylases—structural and functional perspectives on an essential family of DNA repair enzymes." Protein science 23.12 (2014): 1667-1685.^[5]

Comprehensive overview of Uracil DNA glycosylase superfamily, its functions, and classifications.

Lindahl, Tomas (1979). "DNA Glycosylases, Endonucleases for Apurinic/Apyrimidinic Sites, and Base Excision-Repair". Progress in Nucleic Acid Research and Molecular Biology (0079-6603), 22, p. 135.^[6]

Review of DNA glycosylases and their base-excision repair mechanism.

Lee HW, Dominy BN, Cao W. New family of deamination repair enzymes in uracil-DNA glycosylase superfamily. J Biol Chem. 2011 Sep 9;286(36):31282-7. doi: 10.1074/jbc.M111.249524. Epub 2011 Jun 3. PMID: 21642431; PMCID: PMC3173141.^[7]

New subclass 6 for hypoxanthine DNA glycosylase

Lindahl, Tomas, and Richard D. Wood. "Quality control by DNA repair." Science 286.5446 (1999): 1897-1905.^[8]

Overview of DNA repair enzymes, DNA damage types, DNA damage sources, and methods of repair.

Duncan, Bruce K. "27 DNA Glycosylases." The enzymes. Vol. 14. Academic Press, 1981. 565-586.

Another comprehensive overview of DNA glycosylases.

References[edit]

^ John Wiley & Sons, Ltd, ed. (2001-05-30). eLS (1 ed.). Wiley. doi:10.1002/9780470015902.a0000710.pub3. ISBN 978-0-470-01617-6.
^ Kosaka, Hiromichi; Hoseki, Jun; Nakagawa, Noriko; Kuramitsu, Seiki; Masui, Ryoji (2007-11-02). "Crystal Structure of Family 5 Uracil-DNA Glycosylase Bound to DNA". Journal of Molecular Biology. 373 (4): 839–850. doi:10.1016/j.jmb.2007.08.022. ISSN 0022-2836.
^ Pang, Panjiao; Yang, Ye; Li, Jing; Wang, Zhong; Cao, Weiguo; Xie, Wei (2017-03-07). "SMUG2 DNA glycosylase from Pedobacter heparinus as a new subfamily of the UDG superfamily". Biochemical Journal. 474 (6): 923–938. doi:10.1042/bcj20160934. ISSN 0264-6021.
^ Xia, Bo; Liu, Yinling; Li, Wei; Brice, Allyn R.; Dominy, Brian N.; Cao, Weiguo (2014-06-01). "Specificity and Catalytic Mechanism in Family 5 Uracil DNA Glycosylase *". Journal of Biological Chemistry. 289 (26): 18413–18426. doi:10.1074/jbc.M114.567354. ISSN 0021-9258. PMC 4140252. PMID 24838246.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
^ Schormann, N.; Ricciardi, R.; Chattopadhyay, D. (2014-12). "Uracil-DNA glycosylases-Structural and functional perspectives on an essential family of DNA repair enzymes: Uracil-DNA Glycosylases". Protein Science. 23 (12): 1667–1685. doi:10.1002/pro.2554. PMC 4253808. PMID 25252105. {{cite journal}}: Check date values in: |date= (help)CS1 maint: PMC format (link)
^ Lindahl, Tomas (1979-01-01), Cohn, Waldo E. (ed.), "DNA Glycosylases, Endonucleases for Apurinic/Apyrimidinic Sites, and Base Excision-Repair", Progress in Nucleic Acid Research and Molecular Biology, vol. 22, Academic Press, pp. 135–192, doi:10.1016/s0079-6603(08)60800-4, retrieved 2022-09-30
^ Lee, Hyun-Wook; Dominy, Brian N.; Cao, Weiguo (2011-09-09). "New Family of Deamination Repair Enzymes in Uracil-DNA Glycosylase Superfamily *". Journal of Biological Chemistry. 286 (36): 31282–31287. doi:10.1074/jbc.M111.249524. ISSN 0021-9258. PMC 3173141. PMID 21642431.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
^ Lindahl, Tomas; Wood, Richard D. (1999-12-03). "Quality Control by DNA Repair". Science. 286 (5446): 1897–1905. doi:10.1126/science.286.5446.1897. ISSN 0036-8075.

[1] John Wiley & Sons, Ltd, ed. (2001-05-30). eLS (1 ed.). Wiley. doi:10.1002/9780470015902.a0000710.pub3. ISBN 978-0-470-01617-6.

[2] Kosaka, Hiromichi; Hoseki, Jun; Nakagawa, Noriko; Kuramitsu, Seiki; Masui, Ryoji (2007-11-02). "Crystal Structure of Family 5 Uracil-DNA Glycosylase Bound to DNA". Journal of Molecular Biology. 373 (4): 839–850. doi:10.1016/j.jmb.2007.08.022. ISSN 0022-2836.

[3] Pang, Panjiao; Yang, Ye; Li, Jing; Wang, Zhong; Cao, Weiguo; Xie, Wei (2017-03-07). "SMUG2 DNA glycosylase from Pedobacter heparinus as a new subfamily of the UDG superfamily". Biochemical Journal. 474 (6): 923–938. doi:10.1042/bcj20160934. ISSN 0264-6021.

[4] Xia, Bo; Liu, Yinling; Li, Wei; Brice, Allyn R.; Dominy, Brian N.; Cao, Weiguo (2014-06-01). "Specificity and Catalytic Mechanism in Family 5 Uracil DNA Glycosylase *". Journal of Biological Chemistry. 289 (26): 18413–18426. doi:10.1074/jbc.M114.567354. ISSN 0021-9258. PMC 4140252. PMID 24838246.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)

[5] Schormann, N.; Ricciardi, R.; Chattopadhyay, D. (2014-12). "Uracil-DNA glycosylases-Structural and functional perspectives on an essential family of DNA repair enzymes: Uracil-DNA Glycosylases". Protein Science. 23 (12): 1667–1685. doi:10.1002/pro.2554. PMC 4253808. PMID 25252105. {{cite journal}}: Check date values in: |date= (help)CS1 maint: PMC format (link)

[6] Lindahl, Tomas (1979-01-01), Cohn, Waldo E. (ed.), "DNA Glycosylases, Endonucleases for Apurinic/Apyrimidinic Sites, and Base Excision-Repair", Progress in Nucleic Acid Research and Molecular Biology, vol. 22, Academic Press, pp. 135–192, doi:10.1016/s0079-6603(08)60800-4, retrieved 2022-09-30

[7] Lee, Hyun-Wook; Dominy, Brian N.; Cao, Weiguo (2011-09-09). "New Family of Deamination Repair Enzymes in Uracil-DNA Glycosylase Superfamily *". Journal of Biological Chemistry. 286 (36): 31282–31287. doi:10.1074/jbc.M111.249524. ISSN 0021-9258. PMC 3173141. PMID 21642431.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)

[8] Lindahl, Tomas; Wood, Richard D. (1999-12-03). "Quality Control by DNA Repair". Science. 286 (5446): 1897–1905. doi:10.1126/science.286.5446.1897. ISSN 0036-8075.

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