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{{short description|Wikipedia list article}}

This '''list of sequenced animal genomes''' contains animal species for which complete genome sequences have been assembled, annotated and published. Substantially complete draft genomes are included, but not partial genome sequences or organelle-only sequences.

{{Expand list|date=May 2012}}

==Porifera==
* ''[[Amphimedon queenslandica]]'', a [[sponge]] (2009<ref>{{cite journal | vauthors = Srivastava M, Simakov O, Chapman J, Fahey B, Gauthier ME, Mitros T, Richards GS, Conaco C, Dacre M, Hellsten U, Larroux C, Putnam NH, Stanke M, Adamska M, Darling A, Degnan SM, Oakley TH, Plachetzki DC, Zhai Y, Adamski M, Calcino A, Cummins SF, Goodstein DM, Harris C, Jackson DJ, Leys SP, Shu S, Woodcroft BJ, Vervoort M, Kosik KS, Manning G, Degnan BM, Rokhsar DS | display-authors = 6 | title = The Amphimedon queenslandica genome and the evolution of animal complexity | journal = Nature | volume = 466 | issue = 7307 | pages = 720–6 | date = August 2010 | pmid = 20686567 | pmc = 3130542 | doi = 10.1038/nature09201 | bibcode = 2010Natur.466..720S }}</ref>)
* ''[[Stylissa carteri]]'' (2016<ref name=":10">{{cite journal | vauthors = Ryu T, Seridi L, Moitinho-Silva L, Oates M, Liew YJ, Mavromatis C, Wang X, Haywood A, Lafi FF, Kupresanin M, Sougrat R, Alzahrani MA, Giles E, Ghosheh Y, Schunter C, Baumgarten S, Berumen ML, Gao X, Aranda M, Foret S, Gough J, Voolstra CR, Hentschel U, Ravasi T | display-authors = 6 | title = Hologenome analysis of two marine sponges with different microbiomes | journal = BMC Genomics | volume = 17 | issue = 1 | pages = 158 | date = February 2016 | pmid = 26926518 | pmc = 4772301 | doi = 10.1186/s12864-016-2501-0 }}</ref>)
* ''[[Ephydatia muelleri]]'' (2020<ref>{{cite journal | vauthors = Kenny N, Francis, W, Rivera-Vicéns, R | display-authors = 3 | title = Tracing animal genomic evolution with the chromosomal-level assembly of the freshwater sponge Ephydatia muelleri | journal = Nature Communications | volume = 11 | pages = 720–6 | date = July 2020 | issue = 1 | doi = 10.1038/s41467-020-17397-w | pmid = 32719321 | pmc = 7385117 | bibcode = 2020NatCo..11.3676K }}</ref>)
* ''[[Xestospongia testudinaria]]'' (2016<ref name=":10" />)

==Ctenophora==
* ''[[Mnemiopsis leidyi]]'' ([[Ctenophora]]), (order [[Lobata]]) (2012<ref name="MleiGenomeWeb">{{cite web |url=http://research.nhgri.nih.gov/mnemiopsis/ |title=NHGRI Mnemiopsis Genome Project |access-date=2013-02-05 |author=National Human Genome Research Institute |year=2012}}</ref>/2013<ref>{{cite journal | vauthors = Ryan JF, Pang K, Schnitzler CE, Nguyen AD, Moreland RT, Simmons DK, Koch BJ, Francis WR, Havlak P, Smith SA, Putnam NH, Haddock SH, Dunn CW, Wolfsberg TG, Mullikin JC, Martindale MQ, Baxevanis AD | display-authors = 6 | title = The genome of the ctenophore Mnemiopsis leidyi and its implications for cell type evolution | journal = Science | volume = 342 | issue = 6164 | pages = 1242592 | date = December 2013 | pmid = 24337300 | pmc = 3920664 | doi = 10.1126/science.1242592 }}</ref>)
* ''[[Pleurobrachia bachei]]'' ([[Ctenophora]]) (2014<ref>{{cite journal | vauthors = Moroz LL, Kocot KM, Citarella MR, Dosung S, Norekian TP, Povolotskaya IS, Grigorenko AP, Dailey C, Berezikov E, Buckley KM, Ptitsyn A, Reshetov D, Mukherjee K, Moroz TP, Bobkova Y, Yu F, Kapitonov VV, Jurka J, Bobkov YV, Swore JJ, Girardo DO, Fodor A, Gusev F, Sanford R, Bruders R, Kittler E, Mills CE, Rast JP, Derelle R, Solovyev VV, Kondrashov FA, Swalla BJ, Sweedler JV, Rogaev EI, Halanych KM, Kohn AB | display-authors = 6 | title = The ctenophore genome and the evolutionary origins of neural systems | journal = Nature | volume = 510 | issue = 7503 | pages = 109–14 | date = June 2014 | pmid = 24847885 | pmc = 4337882 | doi = 10.1038/nature13400 | bibcode = 2014Natur.510..109M }}</ref>)

==Placozoa==
* ''[[Trichoplax adhaerens]]'', a [[Placozoa]]n (2008<ref>{{cite journal | vauthors = Srivastava M, Begovic E, Chapman J, Putnam NH, Hellsten U, Kawashima T, Kuo A, Mitros T, Salamov A, Carpenter ML, Signorovitch AY, Moreno MA, Kamm K, Grimwood J, Schmutz J, Shapiro H, Grigoriev IV, Buss LW, Schierwater B, Dellaporta SL, Rokhsar DS | s2cid = 4415492 | display-authors = 6 | title = The Trichoplax genome and the nature of placozoans | journal = Nature | volume = 454 | issue = 7207 | pages = 955–60 | date = August 2008 | pmid = 18719581 | doi = 10.1038/nature07191 | bibcode = 2008Natur.454..955S | url = https://digital.library.unt.edu/ark:/67531/metadc895108/ }}</ref>)
* ''[[Hoilungia hongkongensis]]'', nov. gen H13 [[Placozoa]]n (2018<ref>{{cite journal | vauthors = Eitel M, Francis WR, Varoqueaux F, Daraspe J, Osigus HJ, Krebs S, Vargas S, Blum H, Williams GA, Schierwater B, Wörheide G | display-authors = 6 | title = Comparative genomics and the nature of placozoan species | journal = PLOS Biology | volume = 16 | issue = 7 | pages = e2005359 | date = July 2018 | pmid = 30063702 | pmc = 6067683 | doi = 10.1371/journal.pbio.2005359 }}</ref>)

==Cnidaria==
* ''[[Hydra vulgaris]]'', (previously ''Hydra magnipapillata''), a model hydrozoan (2010<ref>{{cite journal | vauthors = Chapman JA, Kirkness EF, Simakov O, Hampson SE, Mitros T, Weinmaier T, Rattei T, Balasubramanian PG, Borman J, Busam D, Disbennett K, Pfannkoch C, Sumin N, Sutton GG, Viswanathan LD, Walenz B, Goodstein DM, Hellsten U, Kawashima T, Prochnik SE, Putnam NH, Shu S, Blumberg B, Dana CE, Gee L, Kibler DF, Law L, Lindgens D, Martinez DE, Peng J, Wigge PA, Bertulat B, Guder C, Nakamura Y, Ozbek S, Watanabe H, Khalturin K, Hemmrich G, Franke A, Augustin R, Fraune S, Hayakawa E, Hayakawa S, Hirose M, Hwang JS, Ikeo K, Nishimiya-Fujisawa C, Ogura A, Takahashi T, Steinmetz PR, Zhang X, Aufschnaiter R, Eder MK, Gorny AK, Salvenmoser W, Heimberg AM, Wheeler BM, Peterson KJ, Böttger A, Tischler P, Wolf A, Gojobori T, Remington KA, Strausberg RL, Venter JC, Technau U, Hobmayer B, Bosch TC, Holstein TW, Fujisawa T, Bode HR, David CN, Rokhsar DS, Steele RE | display-authors = 6 | title = The dynamic genome of Hydra | journal = Nature | volume = 464 | issue = 7288 | pages = 592–6 | date = March 2010 | pmid = 20228792 | pmc = 4479502 | doi = 10.1038/nature08830 | bibcode = 2010Natur.464..592C }}</ref>)
* ''[[Nematostella vectensis]]'', a model [[anemone]] ([[starlet sea anemone]]) (2007<ref>{{cite journal | vauthors = Putnam NH, Srivastava M, Hellsten U, Dirks B, Chapman J, Salamov A, Terry A, Shapiro H, Lindquist E, Kapitonov VV, Jurka J, Genikhovich G, Grigoriev IV, Lucas SM, Steele RE, Finnerty JR, Technau U, Martindale MQ, Rokhsar DS | s2cid = 9868191 | display-authors = 6 | title = Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization | journal = Science | volume = 317 | issue = 5834 | pages = 86–94 | date = July 2007 | pmid = 17615350 | doi = 10.1126/science.1139158 | bibcode = 2007Sci...317...86P | url = https://digital.library.unt.edu/ark:/67531/metadc884638/ }}</ref>)
* ''[[Aiptasia pallida]]'', a [[sea anemone]] (2015)<ref>{{cite journal | vauthors = Baumgarten S, Simakov O, Esherick LY, Liew YJ, Lehnert EM, Michell CT, Li Y, Hambleton EA, Guse A, Oates ME, Gough J, Weis VM, Aranda M, Pringle JR, Voolstra CR | display-authors = 6 | title = The genome of Aiptasia, a sea anemone model for coral symbiosis | journal = Proceedings of the National Academy of Sciences of the United States of America | volume = 112 | issue = 38 | pages = 11893–8 | date = September 2015 | pmid = 26324906 | pmc = 4586855 | doi = 10.1073/pnas.1513318112 | bibcode = 2015PNAS..11211893B }}</ref>
* ''[[Acropora digitifera]]'', a [[coral]] (2011)<ref>{{cite journal | vauthors = Shinzato C, Shoguchi E, Kawashima T, Hamada M, Hisata K, Tanaka M, Fujie M, Fujiwara M, Koyanagi R, Ikuta T, Fujiyama A, Miller DJ, Satoh N | s2cid = 4364757 | display-authors = 6 | title = Using the Acropora digitifera genome to understand coral responses to environmental change | journal = Nature | volume = 476 | issue = 7360 | pages = 320–3 | date = July 2011 | pmid = 21785439 | doi = 10.1038/nature10249 | bibcode = 2011Natur.476..320S }}</ref>
* [[Sea pansy|Renilla muelleri]], an [[Octocorallia|octocoral]] (2017, 2019)<ref>{{Cite web |url= http://rmue.reefgenomics.org/download/ |title=Renilla muelleri genome | vauthors = Jiang J |date=2017 |website=reefgenomics}}</ref><ref>{{cite journal | vauthors = Jiang JB, Quattrini AM, Francis WR, Ryan JF, Rodríguez E, McFadden CS | title = A hybrid de novo assembly of the sea pansy (Renilla muelleri) genome | journal = GigaScience | volume = 8 | issue = 4 | date = April 2019 | pmid = 30942866 | pmc = 6446218 | doi = 10.1093/gigascience/giz026 }}</ref>
* ''[[Stylophora pistillata]]'', a [[coral]] (2017)<ref>{{cite journal | vauthors = Voolstra CR, Li Y, Liew YJ, Baumgarten S, Zoccola D, Flot JF, Tambutté S, Allemand D, Aranda M | display-authors = 6 | title = Comparative analysis of the genomes of Stylophora pistillata and Acropora digitifera provides evidence for extensive differences between species of corals | journal = Scientific Reports | volume = 7 | issue = 1 | pages = 17583 | date = December 2017 | pmid = 29242500 | pmc = 5730576 | doi = 10.1038/s41598-017-17484-x | bibcode = 2017NatSR...717583V }}</ref>
* ''[[Aurelia aurita]]'', [[Aurelia aurita|moon jellyfish]] (2019<ref>{{cite journal | vauthors = Gold DA, Katsuki T, Li Y, Yan X, Regulski M, Ibberson D, Holstein T, Steele RE, Jacobs DK, Greenspan RJ | s2cid = 54437176 | display-authors = 6 | title = The genome of the jellyfish Aurelia and the evolution of animal complexity | journal = Nature Ecology & Evolution | volume = 3 | issue = 1 | pages = 96–104 | date = January 2019 | pmid = 30510179 | doi = 10.1038/s41559-018-0719-8 | url = https://authors.library.caltech.edu/91643/3/41559_2018_719_MOESM2_ESM.pdf }}</ref>)
* ''[[Clytia hemisphaerica]], [[Hydrozoan jellyfish]]'' (2019<ref>{{cite journal | vauthors = Leclère L, Horin C, Chevalier S, Lapébie P, Dru P, Peron S, Jager M, Condamine T, Pottin K, Romano S, Steger J, Sinigaglia C, Barreau C, Quiroga Artigas G, Ruggiero A, Fourrage C, Kraus JE, Poulain J, Aury JM, Wincker P, Quéinnec E, Technau U, Manuel M, Momose T, Houliston E, Copley RR | s2cid = 73728941 | display-authors = 6 | title = The genome of the jellyfish Clytia hemisphaerica and the evolution of the cnidarian life-cycle | journal = Nature Ecology & Evolution | volume = 3 | issue = 5 | pages = 801–810 | date = May 2019 | pmid = 30858591 | doi = 10.1038/s41559-019-0833-2 }}</ref>)
* ''[[Pocillopora damicornis]]'', cauliflower coral (2018<ref>{{cite journal | vauthors = Cunning R, Bay RA, Gillette P, Baker AC, Traylor-Knowles, N | title= Comparative analysis of the Pocillopora damicornis genome highlights role of immune system in coral evolution. | journal = Scientific Reports | volume = 8 | issue = 1 | date = 2018 | page = 16134 | doi = 10.1038/s41598-018-34459-8 | pmid = 30382153 | pmc = 6208414 | bibcode = 2018NatSR...816134C }}</ref>)
* ''[[Orbicella faveolata]]'', mountainous star coral (2016<ref>{{cite journal | vauthors = Prada C, Hanna B, Budd AF, Woodley CM, Schmutz J, Grimwood J, Iglesias-Prieto R, Pandolfi JM, Levitan D, Johnson KG, DiGiorgio M, Medina M | display-authors = 6 | title= 2016 Empty Niches after Extinctions Increase Population Sizes of Modern Corals | journal = Current Biology | volume = 1 | issue = 26 | date = 2016 | pages = 3190–3194 | doi = 10.1016/j.cub.2016.09.039 | pmid = 27866895 | s2cid = 188206 }}</ref>)
* ''[[Nomura's jellyfish|Nemopilema nomurai]]'', [[Nomura's jellyfish|Nomura jellyfish]] (2019<ref>{{cite journal | vauthors = Kim HM, Weber JA, Lee N, Park SG, Cho YS, Bhak Y, Lee N, Jeon Y, Jeon S, Luria V, Karger A, Kirschner MW, Jo YJ, Woo S, Shin K, Chung O, Ryu JC, Yim HS, Lee JH, Edwards JS, Manica A, Bhak J, Yum S | display-authors = 6 | title = The genome of the giant Nomura's jellyfish sheds light on the early evolution of active predation | journal = BMC Biology | volume = 17 | issue = 1 | pages = 28 | date = March 2019 | pmid = 30925871 | pmc = 6441219 | doi = 10.1186/s12915-019-0643-7 }}</ref>)
* ''[[Rhopilema esculentum]]'', Flame jellyfish (2020<ref>{{cite journal | vauthors = Li Y, Gao L, Pan Y, Tian M, Li Y, He C, Dong Y, Sun Y, Zhou Z | display-authors = 6 | title = Chromosome-level reference genome of the jellyfish Rhopilema esculentum | journal = GigaScience | volume = 9 | issue = 4 | date = April 2020 | pmid = 32315029 | pmc = 7172023 | doi = 10.1093/gigascience/giaa036 }}</ref>)
* ''[[Cassiopea xamachana]]'' ([[Scyphozoa]]) (2019)<ref name="OhderaAmes2019">{{cite journal | vauthors = Ohdera A, Ames CL, Dikow RB, Kayal E, Chiodin M, Busby B, La S, Pirro S, Collins AG, Medina M, Ryan JF | display-authors = 6 | title = Box, stalked, and upside-down? Draft genomes from diverse jellyfish (Cnidaria, Acraspeda) lineages: Alatina alata (Cubozoa), Calvadosia cruxmelitensis (Staurozoa), and Cassiopea xamachana (Scyphozoa) | journal = GigaScience | volume = 8 | issue = 7 | date = July 2019 | pmid = 31257419 | pmc = 6599738 | doi = 10.1093/gigascience/giz069 }}</ref>
* ''[[Alatina alata]]'' ([[Cubozoa]]) (2019)<ref name="OhderaAmes2019" />
* ''[[Calvadosia cruxmelitensis]]'' ([[Staurozoa]]) (2019)<ref name="OhderaAmes2019" />
* ''[[Dendronephthya]] gigantea'', an [[Octocorallia|octocoral]] (2019)<ref>{{cite journal | vauthors = Jeon Y, Park SG, Lee N, Weber JA, Kim HS, Hwang SJ, Woo S, Kim HM, Bhak Y, Jeon S, Lee N, Jo Y, Blazyte A, Ryu T, Cho YS, Kim H, Lee JH, Yim HS, Bhak J, Yum S | display-authors = 6 | title = The Draft Genome of an Octocoral, Dendronephthya gigantea | journal = Genome Biology and Evolution | volume = 11 | issue = 3 | pages = 949–953 | date = March 2019 | pmid = 30825304 | pmc = 6447388 | doi = 10.1093/gbe/evz043 }}</ref>
*''[[Acropora tenuis]]'' (2020)<ref>{{cite journal | vauthors = Cooke I, Ying H, Forêt S, Bongaerts P, Strugnell JM, Simakov O, Zhang J, Field MA, Rodriguez-Lanetty M, Bell SC, Bourne DG, van Oppen MJ, Ragan MA, Miller DJ | display-authors = 6 | title = Genomic signatures in the coral holobiont reveal host adaptations driven by Holocene climate change and reef specific symbionts | journal = Science Advances | volume = 6 | issue = 48 | pages = eabc6318 | date = November 2020 | pmid = 33246955 | pmc = 7695477 | doi = 10.1126/sciadv.abc6318 | s2cid = 227179581 | bibcode = 2020SciA....6.6318C }}</ref>

==Deuterostomia==

=== Hemichordates ===
* ''[[Saccoglossus kowalevskii]]'', Enteropneusta (2015<ref name=":0">{{cite journal | vauthors = Simakov O, Kawashima T, Marlétaz F, Jenkins J, Koyanagi R, Mitros T, Hisata K, Bredeson J, Shoguchi E, Gyoja F, Yue JX, Chen YC, Freeman RM, Sasaki A, Hikosaka-Katayama T, Sato A, Fujie M, Baughman KW, Levine J, Gonzalez P, Cameron C, Fritzenwanker JH, Pani AM, Goto H, Kanda M, Arakaki N, Yamasaki S, Qu J, Cree A, Ding Y, Dinh HH, Dugan S, Holder M, Jhangiani SN, Kovar CL, Lee SL, Lewis LR, Morton D, Nazareth LV, Okwuonu G, Santibanez J, Chen R, Richards S, Muzny DM, Gillis A, Peshkin L, Wu M, Humphreys T, Su YH, Putnam NH, Schmutz J, Fujiyama A, Yu JK, Tagawa K, Worley KC, Gibbs RA, Kirschner MW, Lowe CJ, Satoh N, Rokhsar DS, Gerhart J | display-authors = 6 | title = Hemichordate genomes and deuterostome origins | journal = Nature | volume = 527 | issue = 7579 | pages = 459–65 | date = November 2015 | pmid = 26580012 | pmc = 4729200 | doi = 10.1038/nature16150 | bibcode = 2015Natur.527..459S }}</ref>)
* ''[[Ptychodera]] flava'', Enteropneusta (2015<ref name=":0" />)

===Echinoderms===
* ''[[Acanthaster planci]]'', [[starfish]] (2014<ref>{{cite journal | vauthors = Baughman KW, McDougall C, Cummins SF, Hall M, Degnan BM, Satoh N, Shoguchi E | title = Genomic organization of Hox and ParaHox clusters in the echinoderm, Acanthaster planci | journal = Genesis | volume = 52 | issue = 12 | pages = 952–8 | date = December 2014 | pmid = 25394327 | doi = 10.1002/dvg.22840 | s2cid = 32809575 }}</ref>)
* ''[[Apostichopus japonicus]]'', [[sea cucumber]] (2017<ref>{{cite journal | vauthors = Jo J, Oh J, Lee HG, Hong HH, Lee SG, Cheon S, Kern EM, Jin S, Cho SJ, Park JK, Park C | display-authors = 6 | title = Draft genome of the sea cucumber Apostichopus japonicus and genetic polymorphism among color variants | journal = GigaScience | volume = 6 | issue = 1 | pages = 1–6 | date = January 2017 | pmid = 28369350 | pmc = 5437941 | doi = 10.1093/gigascience/giw006 }}</ref>)
* ''[[Strongylocentrotus purpuratus]]'', a [[sea urchin]] and model [[deuterostome]] (2006<ref>{{cite journal | vauthors = Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R | display-authors = 6 | title = The genome of the sea urchin Strongylocentrotus purpuratus | journal = Science | volume = 314 | issue = 5801 | pages = 941–52 | date = November 2006 | pmid = 17095691 | pmc = 3159423 | doi = 10.1126/science.1133609 | bibcode = 2006Sci...314..941S }}</ref>)

===Tunicates===
* ''[[Ciona intestinalis]]'', a [[tunicate]] (2002<ref>{{cite journal | vauthors = Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M, Goodstein DM, Harafuji N, Hastings KE, Ho I, Hotta K, Huang W, Kawashima T, Lemaire P, Martinez D, Meinertzhagen IA, Necula S, Nonaka M, Putnam N, Rash S, Saiga H, Satake M, Terry A, Yamada L, Wang HG, Awazu S, Azumi K, Boore J, Branno M, Chin-Bow S, DeSantis R, Doyle S, Francino P, Keys DN, Haga S, Hayashi H, Hino K, Imai KS, Inaba K, Kano S, Kobayashi K, Kobayashi M, Lee BI, Makabe KW, Manohar C, Matassi G, Medina M, Mochizuki Y, Mount S, Morishita T, Miura S, Nakayama A, Nishizaka S, Nomoto H, Ohta F, Oishi K, Rigoutsos I, Sano M, Sasaki A, Sasakura Y, Shoguchi E, Shin-i T, Spagnuolo A, Stainier D, Suzuki MM, Tassy O, Takatori N, Tokuoka M, Yagi K, Yoshizaki F, Wada S, Zhang C, Hyatt PD, Larimer F, Detter C, Doggett N, Glavina T, Hawkins T, Richardson P, Lucas S, Kohara Y, Levine M, Satoh N, Rokhsar DS | s2cid = 15987281 | display-authors = 6 | title = The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins | journal = Science | volume = 298 | issue = 5601 | pages = 2157–67 | date = December 2002 | pmid = 12481130 | doi = 10.1126/science.1080049 | bibcode = 2002Sci...298.2157D }}</ref>)
* ''[[Ciona savignyi]]'', a [[tunicate]] (2007<ref>{{cite journal | vauthors = Small KS, Brudno M, Hill MM, Sidow A | title = A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome | journal = Genome Biology | volume = 8 | issue = 3 | pages = R41 | year = 2007 | pmid = 17374142 | pmc = 1868934 | doi = 10.1186/gb-2007-8-3-r41 }}</ref>)
* ''[[Oikopleura dioica]]'', a [[larvacean]] (2001<ref>{{cite journal | vauthors = Seo HC, Kube M, Edvardsen RB, Jensen MF, Beck A, Spriet E, Gorsky G, Thompson EM, Lehrach H, Reinhardt R, Chourrout D | display-authors = 6 | title = Miniature genome in the marine chordate Oikopleura dioica | journal = Science | volume = 294 | issue = 5551 | pages = 2506 | date = December 2001 | pmid = 11752568 | doi = 10.1126/science.294.5551.2506 }}</ref>).

===Cephalochordates===
* ''[[Branchiostoma floridae]]'', a [[lancelet]] (2008<ref>{{cite journal | vauthors = Putnam NH, Butts T, Ferrier DE, Furlong RF, Hellsten U, Kawashima T, Robinson-Rechavi M, Shoguchi E, Terry A, Yu JK, Benito-Gutiérrez EL, Dubchak I, Garcia-Fernàndez J, Gibson-Brown JJ, Grigoriev IV, Horton AC, de Jong PJ, Jurka J, Kapitonov VV, Kohara Y, Kuroki Y, Lindquist E, Lucas S, Osoegawa K, Pennacchio LA, Salamov AA, Satou Y, Sauka-Spengler T, Schmutz J, Shin-I T, Toyoda A, Bronner-Fraser M, Fujiyama A, Holland LZ, Holland PW, Satoh N, Rokhsar DS | s2cid = 4418548 | display-authors = 6 | title = The amphioxus genome and the evolution of the chordate karyotype | journal = Nature | volume = 453 | issue = 7198 | pages = 1064–71 | date = June 2008 | pmid = 18563158 | doi = 10.1038/nature06967 | bibcode = 2008Natur.453.1064P | url = https://digital.library.unt.edu/ark:/67531/metadc900547/ }}</ref>)

===Cyclostomes===
* ''[[Petromyzon marinus]]'', a [[lamprey]] (2009,<ref>{{cite journal | vauthors = Libants S, Carr K, Wu H, Teeter JH, Chung-Davidson YW, Zhang Z, Wilkerson C, Li W | title = The sea lamprey Petromyzon marinus genome reveals the early origin of several chemosensory receptor families in the vertebrate lineage | journal = BMC Evolutionary Biology | volume = 9 | pages = 180 | date = July 2009 | pmid = 19646260 | pmc = 2728731 | doi = 10.1186/1471-2148-9-180 }}</ref> 2013<ref>{{cite journal | vauthors = Smith JJ, Kuraku S, Holt C, Sauka-Spengler T, Jiang N, Campbell MS, Yandell MD, Manousaki T, Meyer A, Bloom OE, Morgan JR, Buxbaum JD, Sachidanandam R, Sims C, Garruss AS, Cook M, Krumlauf R, Wiedemann LM, Sower SA, Decatur WA, Hall JA, Amemiya CT, Saha NR, Buckley KM, Rast JP, Das S, Hirano M, McCurley N, Guo P, Rohner N, Tabin CJ, Piccinelli P, Elgar G, Ruffier M, Aken BL, Searle SM, Muffato M, Pignatelli M, Herrero J, Jones M, Brown CT, Chung-Davidson YW, Nanlohy KG, Libants SV, Yeh CY, McCauley DW, Langeland JA, Pancer Z, Fritzsch B, de Jong PJ, Zhu B, Fulton LL, Theising B, Flicek P, Bronner ME, Warren WC, Clifton SW, Wilson RK, Li W | display-authors = 6 | title = Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution | journal = Nature Genetics | volume = 45 | issue = 4 | pages = 415–21, 421e1-2 | date = April 2013 | pmid = 23435085 | pmc = 3709584 | doi = 10.1038/ng.2568 }}</ref>)

===Cartilaginous fish===
* ''[[Callorhinchus milii]]'', an [[elephant shark]] (2007<ref>{{cite journal | vauthors = Venkatesh B, Kirkness EF, Loh YH, Halpern AL, Lee AP, Johnson J, Dandona N, Viswanathan LD, Tay A, Venter JC, Strausberg RL, Brenner S | display-authors = 6 | title = Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome | journal = PLOS Biology | volume = 5 | issue = 4 | pages = e101 | date = April 2007 | pmid = 17407382 | pmc = 1845163 | doi = 10.1371/journal.pbio.0050101 }}</ref>)
* [[Whale shark|''Rhincodon typus'', Whale shark]] (2017)<ref>{{cite journal | vauthors = Read TD, Petit RA, Joseph SJ, Alam MT, Weil MR, Ahmad M, Bhimani R, Vuong JS, Haase CP, Webb DH, Tan M, Dove AD | display-authors = 6 | title = Draft sequencing and assembly of the genome of the world's largest fish, the whale shark: Rhincodon typus Smith 1828 | journal = BMC Genomics | volume = 18 | issue = 1 | pages = 532 | date = July 2017 | pmid = 28709399 | pmc = 5513125 | doi = 10.1186/s12864-017-3926-9 }}</ref>
* ''[[Great white shark|Carcharodon carcharias]]'', [[Great white shark]] (''2018''<ref>{{cite journal | vauthors = Marra NJ, Stanhope MJ, Jue NK, Wang M, Sun Q, Pavinski Bitar P, Richards VP, Komissarov A, Rayko M, Kliver S, Stanhope BJ, Winkler C, O'Brien SJ, Antunes A, Jorgensen S, Shivji MS | display-authors = 6 | title = White shark genome reveals ancient elasmobranch adaptations associated with wound healing and the maintenance of genome stability | journal = Proceedings of the National Academy of Sciences of the United States of America | volume = 116 | issue = 10 | pages = 4446–4455 | date = February 2019 | pmid = 30782839 | pmc = 6410855 | doi = 10.1073/pnas.1819778116 }}</ref>'')''
*''[[Whitespotted bamboo shark|Chiloscyllium plagiosum]]'', Whitespotted bamboo shark (2020<ref>{{cite journal | vauthors = Zhang Y, Gao H, Li H, Guo J, Ouyang B, Wang M, Xu Q, Wang J, Lv M, Guo X, Liu Q, Wei L, Ren H, Xi Y, Guo Y, Ren B, Pan S, Liu C, Ding X, Xiang H, Yu Y, Song Y, Meng L, Liu S, Wang J, Jiang Y, Shi J, Liu S, Sabir JS, Sabir MJ, Khan M, Hajrah NH, Ming-Yuen Lee S, Xu X, Yang H, Wang J, Fan G, Yang N, Liu X | display-authors = 6 | title = The White-Spotted Bamboo Shark Genome Reveals Chromosome Rearrangements and Fast-Evolving Immune Genes of Cartilaginous Fish | language = English | journal = iScience | volume = 23 | issue = 11 | pages = 101754 | date = November 2020 | pmid = 33251490 | pmc = 7677710 | doi = 10.1016/j.isci.2020.101754 }}</ref>)
* ''[[Brownbanded bamboo shark|Chiloscyllium punctatum]]'', [[Brownbanded bamboo shark]] (2018<ref name="Shark genomes provide insights into">{{cite journal | vauthors = Hara Y, Yamaguchi K, Onimaru K, Kadota M, Koyanagi M, Keeley SD, Tatsumi K, Tanaka K, Motone F, Kageyama Y, Nozu R, Adachi N, Nishimura O, Nakagawa R, Tanegashima C, Kiyatake I, Matsumoto R, Murakumo K, Nishida K, Terakita A, Kuratani S, Sato K, Hyodo S, Kuraku S | s2cid = 52944566 | display-authors = 6 | title = Shark genomes provide insights into elasmobranch evolution and the origin of vertebrates | journal = Nature Ecology & Evolution | volume = 2 | issue = 11 | pages = 1761–1771 | date = November 2018 | pmid = 30297745 | doi = 10.1038/s41559-018-0673-5 }}</ref>)
* ''[[Cloudy catshark|Scyliorhinus torazame]]'', [[Cloudy catshark]] (2018<ref name="Shark genomes provide insights into"/>)

=== Lungfish ===
* Order [[Lungfish|Dipnoi]]
**''[[West African lungfish|Protopterus annectens]]'', West-African lungfish (2021<ref>{{cite journal | vauthors = Wang K, Wang J, Zhu C, Yang L, Ren Y, Ruan J, Fan G, Hu J, Xu W, Bi X, Zhu Y, Song Y, Chen H, Ma T, Zhao R, Jiang H, Zhang B, Feng C, Yuan Y, Gan X, Li Y, Zeng H, Liu Q, Zhang Y, Shao F, Hao S, Zhang H, Xu X, Liu X, Wang D, Zhu M, Zhang G, Zhao W, Qiu Q, He S, Wang W | display-authors = 6 | title = African lungfish genome sheds light on the vertebrate water-to-land transition | journal = Cell | date = February 2021 | pmid = 33545087 | doi = 10.1016/j.cell.2021.01.047 | s2cid = 231809825 }}</ref>)

=== Bony fish ===
* Order [[Anabantiformes]]
**''[[Siamese fighting fish|Betta splendens]]'', [[Siamese fighting fish]] (2018<ref>{{cite journal | vauthors = Fan G, Chan J, Ma K, Yang B, Zhang H, Yang X, Shi C, Chun-Hin Law H, Ren Z, Xu Q, Liu Q, Wang J, Chen W, Shao L, Gonçalves D, Ramos A, Cardoso SD, Guo M, Cai J, Xu X, Wang J, Yang H, Liu X, Wang Y | display-authors = 6 | title = Chromosome-level reference genome of the Siamese fighting fish Betta splendens, a model species for the study of aggression | journal = GigaScience | volume = 7 | issue = 11 | date = November 2018 | pmid = 30010754 | pmc = 6251983 | doi = 10.1093/gigascience/giy087 }}</ref>)
** ''[[Kissing gourami|Helostoma temminkii]]'', Kissing gourami (2020<ref name=":13">{{cite journal | vauthors = Fan G, Song Y, Yang L, Huang X, Zhang S, Zhang M, Yang X, Chang Y, Zhang H, Li Y, Liu S, Yu L, Chu J, Seim I, Feng C, Near TJ, Wing RA, Wang W, Wang K, Wang J, Xu X, Yang H, Liu X, Chen N, He S | display-authors = 6 | title = Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K) | journal = GigaScience | volume = 9 | issue = 8 | date = August 2020 | pmid = 32810278 | pmc = 7433795 | doi = 10.1093/gigascience/giaa080 }}</ref><ref>{{Citation| vauthors = Guangyi S, Yue S, Liandong Y, Xiaoyun H, Suyu Z, Mengqi Z, Xianwei Y, Yue C, He Z |title=Genomic data of the kissing gourami, Helostoma temminkii|date=2020|url=http://gigadb.org/dataset/102190|publisher=GigaScience Database|language=en|doi=10.5524/102190|access-date=2020-08-19}}</ref>)
* Order [[Beloniformes]]
** ''[[Oryzias latipes]]'', [[medaka]] (2007)<ref>{{cite journal | vauthors = Kasahara M, Naruse K, Sasaki S, Nakatani Y, Qu W, Ahsan B, Yamada T, Nagayasu Y, Doi K, Kasai Y, Jindo T, Kobayashi D, Shimada A, Toyoda A, Kuroki Y, Fujiyama A, Sasaki T, Shimizu A, Asakawa S, Shimizu N, Hashimoto S, Yang J, Lee Y, Matsushima K, Sugano S, Sakaizumi M, Narita T, Ohishi K, Haga S, Ohta F, Nomoto H, Nogata K, Morishita T, Endo T, Shin-I T, Takeda H, Morishita S, Kohara Y | s2cid = 4419559 | display-authors = 6 | title = The medaka draft genome and insights into vertebrate genome evolution | journal = Nature | volume = 447 | issue = 7145 | pages = 714–9 | date = June 2007 | pmid = 17554307 | doi = 10.1038/nature05846 | bibcode = 2007Natur.447..714K }}</ref>
* Order [[Callionymiformes]]
**''[[Common dragonet|Callionymus lyra]]'', common dragonet (2020<ref>{{Cite journal| vauthors = Winter S, Prost S, De Raad J, Coimbra R, Wolf M, Nebenfuehr M, Held A, Kurzawe M, Papapostolou R, Tessien J, Bludau J | display-authors = 6 |title=Chromosome-level genome assembly of a benthic associated Syngnathiformes species: the common dragonet, Callionymus lyra|url=https://gigabytejournal.com/articles/6|journal=Gigabyte|year=2020|volume=2020|pages=1–10|language=en|doi=10.46471/gigabyte.6}}</ref>)
* Order [[Centrarchiformes]]
** ''[[Striped beakfish|Oplegnathus fasciatus]]'', [[Striped beakfish|barred knifejaw]] (2019<ref>{{cite journal | vauthors = Xiao Y, Xiao Z, Ma D, Liu J, Li J | title = Genome sequence of the barred knifejaw Oplegnathus fasciatus (Temminck & Schlegel, 1844): the first chromosome-level draft genome in the family Oplegnathidae | journal = GigaScience | volume = 8 | issue = 3 | date = March 2019 | pmid = 30715332 | pmc = 6423371 | doi = 10.1093/gigascience/giz013 }}</ref>)
* Order [[Characiformes]]
** ''[[Mexican tetra|Astyanax mexicanus]]'', Mexican tetra (2014<ref>{{cite journal | vauthors = McGaugh SE, Gross JB, Aken B, Blin M, Borowsky R, Chalopin D, Hinaux H, Jeffery WR, Keene A, Ma L, Minx P, Murphy D, O'Quin KE, Rétaux S, Rohner N, Searle SM, Stahl BA, Tabin C, Volff JN, Yoshizawa M, Warren WC | display-authors = 6 | title = The cavefish genome reveals candidate genes for eye loss | journal = Nature Communications | volume = 5 | issue = 1 | pages = 5307 | date = October 2014 | pmid = 25329095 | doi = 10.1038/ncomms6307 | pmc = 4218959 | bibcode = 2014NatCo...5.5307M }}</ref>)
* Order [[Cichliformes]]
** ''[[Nile tilapia|Oreochromis niloticus]]'', [[Nile tilapia]] (2019<ref name=":3">{{cite journal | vauthors = Conte MA, Joshi R, Moore EC, Nandamuri SP, Gammerdinger WJ, Roberts RB, Carleton KL, Lien S, Kocher TD | display-authors = 6 | title = Chromosome-scale assemblies reveal the structural evolution of African cichlid genomes | journal = GigaScience | volume = 8 | issue = 4 | date = April 2019 | pmid = 30942871 | pmc = 6447674 | doi = 10.1093/gigascience/giz030 }}</ref>)
** ''[[Zebra mbuna|Metriaclima zeb]]'', [[Cichlid|Lake Malawi cichlid]] ''(''2019<ref name=":3" />)
* Order [[Clupeiformes]]
** ''[[Atlantic herring|Clupea harengus]]'', Atlantic herring (2020<ref>{{cite journal | vauthors = Í Kongsstovu S, Dahl HA, Gislason H, Í Homrum E, Jacobsen JA, Flicek P, Mikalsen SO | s2cid = 215774454 | title = Identification of male heterogametic sex determining regions on the Atlantic herring Clupea harengus genome | journal = Journal of Fish Biology | volume = 97| issue = 1| date = April 2020 | pages = 190–201 | pmid = 32293027 | doi = 10.1111/jfb.14349 | pmc = 7115899 }}</ref>)
** ''[[Coilia nasus]]'', Japanese grenadier anchovy (2020<ref>{{cite journal | vauthors = Xu G, Bian C, Nie Z, Li J, Wang Y, Xu D, You X, Liu H, Gao J, Li H, Liu K, Yang J, Li Q, Shao N, Zhuang Y, Fang D, Jiang T, Lv Y, Huang Y, Gu R, Xu J, Ge W, Shi Q, Xu P | display-authors = 6 | title = Genome and population sequencing of a chromosome-level genome assembly of the Chinese tapertail anchovy (Coilia nasus) provides novel insights into migratory adaptation | journal = GigaScience | volume = 9 | issue = 1 | date = January 2020 | pmid = 31895412 | pmc = 6939831 | doi = 10.1093/gigascience/giz157 }}</ref>)
** ''[[European pilchard|Sardina pilchardus]]'', [[European sardine]] ''(''2019<ref>{{cite journal | vauthors = Louro B, De Moro G, Garcia C, Cox CJ, Veríssimo A, Sabatino SJ, Santos AM, Canário AV | display-authors = 6 | title = A haplotype-resolved draft genome of the European sardine (Sardina pilchardus) | journal = GigaScience | volume = 8 | issue = 5 | date = May 2019 | pmid = 31112613 | pmc = 6528745 | doi = 10.1093/gigascience/giz059 }}</ref>)
* Order [[Coelacanth]]iformes
** ''[[Latimeria chalumnae]]'', West Indian Ocean coelacanth and oldest known living lineage of [[Sarcopterygii]] (2013<ref>{{cite journal | vauthors = Amemiya CT, Alföldi J, Lee AP, Fan S, Philippe H, Maccallum I, Braasch I, Manousaki T, Schneider I, Rohner N, Organ C, Chalopin D, Smith JJ, Robinson M, Dorrington RA, Gerdol M, Aken B, Biscotti MA, Barucca M, Baurain D, Berlin AM, Blatch GL, Buonocore F, Burmester T, Campbell MS, Canapa A, Cannon JP, Christoffels A, De Moro G, Edkins AL, Fan L, Fausto AM, Feiner N, Forconi M, Gamieldien J, Gnerre S, Gnirke A, Goldstone JV, Haerty W, Hahn ME, Hesse U, Hoffmann S, Johnson J, Karchner SI, Kuraku S, Lara M, Levin JZ, Litman GW, Mauceli E, Miyake T, Mueller MG, Nelson DR, Nitsche A, Olmo E, Ota T, Pallavicini A, Panji S, Picone B, Ponting CP, Prohaska SJ, Przybylski D, Saha NR, Ravi V, Ribeiro FJ, Sauka-Spengler T, Scapigliati G, Searle SM, Sharpe T, Simakov O, Stadler PF, Stegeman JJ, Sumiyama K, Tabbaa D, Tafer H, Turner-Maier J, van Heusden P, White S, Williams L, Yandell M, Brinkmann H, Volff JN, Tabin CJ, Shubin N, Schartl M, Jaffe DB, Postlethwait JH, Venkatesh B, Di Palma F, Lander ES, Meyer A, Lindblad-Toh K | display-authors = 6 | title = The African coelacanth genome provides insights into tetrapod evolution | journal = Nature | volume = 496 | issue = 7445 | pages = 311–6 | date = April 2013 | pmid = 23598338 | pmc = 3633110 | doi = 10.1038/nature12027 | bibcode = 2013Natur.496..311A }}</ref><ref>[http://www.ensembl.org/Latimeria_chalumnae/Info/Index Ensembl entry]</ref>)
* Order [[Cypriniformes]]
**''[[Anabarilius grahami|Anabarilius grahami Regan]]'', [[Kanglang fish]] (2018<ref>{{cite journal | vauthors = Jiang W, Qiu Y, Pan X, Zhang Y, Wang X, Lv Y, Bian C, Li J, You X, Chen J, Yang K, Yang J, Sun C, Liu Q, Cheng L, Yang J, Shi Q | display-authors = 6 | title = Anabarilius grahami (Regan), and Its Evolutionary and Genetic Applications | language = en | journal = Frontiers in Genetics | volume = 9 | pages = 614 | date = 2018 | pmid = 30564274 | pmc = 6288284 | doi = 10.3389/fgene.2018.00614 }}</ref>)
** ''[[Danio rerio]]'', a [[zebrafish]] (2007<ref>{{cite web |url=http://www.ensembl.org/Danio_rerio/Info/Index |title=Ensembl genome browser 59: Danio rerio - Description - Search Ensembl Zebrafish |publisher=Ensembl.org |access-date=2010-08-27}}</ref>)
** ''[[Oxygymnocypris stewartii]],(''2019<ref>{{cite journal | vauthors = Liu HP, Xiao SJ, Wu N, Wang D, Liu YC, Zhou CW, Liu QY, Yang RB, Jiang WK, Liang QQ, Zhang C, Gong JH, Yuan XH, Mou ZB | display-authors = 6 | title = The sequence and de novo assembly of Oxygymnocypris stewartii genome | journal = Scientific Data | volume = 6 | pages = 190009 | date = February 2019 | pmid = 30720802 | pmc = 6362891 | doi = 10.1038/sdata.2019.9 | bibcode = 2019NatSD...690009L }}</ref>)
** ''[[Wuchang bream|Megalobrama amblycephala]]'', [[blunt snout bream]] (2017<ref>{{cite journal | vauthors = Liu H, Chen C, Gao Z, Min J, Gu Y, Jian J, Jiang X, Cai H, Ebersberger I, Xu M, Zhang X, Chen J, Luo W, Chen B, Chen J, Liu H, Li J, Lai R, Bai M, Wei J, Yi S, Wang H, Cao X, Zhou X, Zhao Y, Wei K, Yang R, Liu B, Zhao S, Fang X, Schartl M, Qian X, Wang W | display-authors = 6 | title = The draft genome of blunt snout bream (Megalobrama amblycephala) reveals the development of intermuscular bone and adaptation to herbivorous diet | journal = GigaScience | volume = 6 | issue = 7 | pages = 1–13 | date = July 2017 | pmid = 28535200 | pmc = 5570040 | doi = 10.1093/gigascience/gix039 }}</ref>)
** [[Rosy bitterling|''Rhodeus ocellatus'']], Rosy bitterling (2020<ref>{{Cite journal|title= Genomic data of the rosy bitterling, Rhodeus ocellatus|year=2020|language=en|doi=10.5524/102192| vauthors = Fan G, Song Y, Yang L, Huang X, Zhang S, Zhang M, Yang X, Chang Y, Zhang H, Li Y, Liu S, Yu L, Chu J, Seim I, Feng C, Near TJ, Wing RA, Wang W, Wang K, Wang J, Xu X, Yang H, Liu X, Chen N, He S | display-authors = 6 |publisher=GigaScience Database}}</ref><ref name=":13" />)
**''[[Triplophysa bleekeri]]'', Tibetan stone loach (2020<ref>{{cite journal | vauthors = Yuan D, Chen X, Gu H, Zou M, Zou Y, Fang J, Tao W, Dai X, Xiao S, Wang Z | display-authors = 6 | title = Chromosomal genome of Triplophysa bleekeri provides insights into its evolution and environmental adaptation | journal = GigaScience | volume = 9 | issue = 11 | date = November 2020 | pmid = 33231676 | pmc = 7684707 | doi = 10.1093/gigascience/giaa132 }}</ref>)
** ''[[Pseudobrama simoni]]'' (2020<ref>{{Cite journal|title= Genomic data of Pseudobrama simoni|year=2020|language=en|doi=10.5524/102191| vauthors = Fan G, Song Y, Yang L, Huang X, Zhang S, Zhang M, Yang X, Chang Y, Zhang H, Li Y, Liu S, Yu L, Chu J, Seim I, Feng C, Near TJ, Wing RA, Wang W, Wang K, Wang J, Xu X, Yang H, Liu X, Chen N, He S | display-authors = 6 |publisher=GigaScience Database}}</ref><ref name=":13" />)
* Order [[Cyprinodontiformes]]
** ''[[Northern studfish|Fundulus catenatus]],'' Northern studfish (2020<ref name=":15">{{cite journal | vauthors = Johnson LK, Sahasrabudhe R, Gill JA, Roach JL, Froenicke L, Brown CT, Whitehead A | title = Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American Fundulus killifish | journal = GigaScience | volume = 9 | issue = 6 | date = June 2020 | pmid = 32556169 | pmc = 7301629 | doi = 10.1093/gigascience/giaa067 }}</ref>)
**''[[Fundulus olivaceus]],'' Blackspotted topminnow (2020<ref name=":15" />)
**''[[Fundulus nottii]],'' Bayou topminnow (2020<ref name=":15" />)
**''[[Fundulus]] xenicus,'' Diamond killifish (2020<ref name=":15" />)
**''[[Gambusia affinis]]'', western mosquitofish (2020<ref>{{cite journal | vauthors = Shao F, Ludwig A, Mao Y, Liu N, Peng Z | title = Chromosome-level genome assembly of the female western mosquitofish (Gambusia affinis) | journal = GigaScience | volume = 9 | issue = 8 | date = August 2020 | pmid = 32852039 | pmc = 7450667 | doi = 10.1093/gigascience/giaa092 }}</ref>)
**''[[Heterandria formosa]]'', least killifish (2019<ref name="The genome of the live-bearing fish">{{cite journal|display-authors=6|vauthors=van Kruistum H, van den Heuvel J, Travis J, Kraaijeveld K, Zwaan BJ, Groenen MA, Megens HJ, Pollux BJ|date=July 2019|title=The genome of the live-bearing fish Heterandria formosa implicates a role of conserved vertebrate genes in the evolution of placental fish|journal=BMC Evolutionary Biology|volume=19|issue=1|pages=156|doi=10.1186/s12862-019-1484-2|pmc=6660938|pmid=31349784}}</ref>)
** ''[[Xiphophorus maculatus]]'', [[platyfish]] (2013<ref>{{cite journal | vauthors = Schartl M, Walter RB, Shen Y, Garcia T, Catchen J, Amores A, Braasch I, Chalopin D, Volff JN, Lesch KP, Bisazza A, Minx P, Hillier L, Wilson RK, Fuerstenberg S, Boore J, Searle S, Postlethwait JH, Warren WC | display-authors = 6 | title = The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits | journal = Nature Genetics | volume = 45 | issue = 5 | pages = 567–72 | date = May 2013 | pmid = 23542700 | pmc = 3677569 | doi = 10.1038/ng.2604 }}</ref>)
** ''[[Nothobranchius furzeri]]'', turquoise [[killifish]] (2015<ref>{{cite journal | vauthors = Harel I, Benayoun BA, Machado B, Singh PP, Hu CK, Pech MF, Valenzano DR, Zhang E, Sharp SC, Artandi SE, Brunet A | title = A platform for rapid exploration of aging and diseases in a naturally short-lived vertebrate | journal = Cell | volume = 160 | issue = 5 | pages = 1013–1026 | date = February 2015 | pmid = 25684364 | pmc = 4344913 | doi = 10.1016/j.cell.2015.01.038 }}</ref><ref>{{cite journal | vauthors = Reichwald K, Petzold A, Koch P, Downie BR, Hartmann N, Pietsch S, Baumgart M, Chalopin D, Felder M, Bens M, Sahm A, Szafranski K, Taudien S, Groth M, Arisi I, Weise A, Bhatt SS, Sharma V, Kraus JM, Schmid F, Priebe S, Liehr T, Görlach M, Than ME, Hiller M, Kestler HA, Volff JN, Schartl M, Cellerino A, Englert C, Platzer M | s2cid = 16423362 | display-authors = 6 | title = Insights into Sex Chromosome Evolution and Aging from the Genome of a Short-Lived Fish | journal = Cell | volume = 163 | issue = 6 | pages = 1527–38 | date = December 2015 | pmid = 26638077 | doi = 10.1016/j.cell.2015.10.071 }}</ref><ref>{{cite journal | vauthors = Valenzano DR, Benayoun BA, Singh PP, Zhang E, Etter PD, Hu CK, Clément-Ziza M, Willemsen D, Cui R, Harel I, Machado BE, Yee MC, Sharp SC, Bustamante CD, Beyer A, Johnson EA, Brunet A | title = The African Turquoise Killifish Genome Provides Insights into Evolution and Genetic Architecture of Lifespan | journal = Cell | volume = 163 | issue = 6 | pages = 1539–54 | date = December 2015 | pmid = 26638078 | pmc = 4684691 | doi = 10.1016/j.cell.2015.11.008 }}</ref>)
* Order [[Esociformes]]
** ''[[Esox lucius]]'', [[northern pike]] (2014<ref>{{cite journal | vauthors = Rondeau EB, Minkley DR, Leong JS, Messmer AM, Jantzen JR, von Schalburg KR, Lemon C, Bird NH, Koop BF | display-authors = 6 | title = The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei | journal = PLOS ONE | volume = 9 | issue = 7 | pages = e102089 | year = 2014 | pmid = 25069045 | pmc = 4113312 | doi = 10.1371/journal.pone.0102089 | bibcode = 2014PLoSO...9j2089R }}</ref>)
* Order [[Gadiformes]]
** ''[[Gadus morhua]]'', Atlantic cod (2011<ref>[http://pre.ensembl.org/Gadus_morhua/Info/Index Ensembl Pre entry]{{dead link|date=January 2018 |bot=InternetArchiveBot |fix-attempted=yes }}</ref>)
* Order [[Gasterosteiformes]]
** ''[[Gasterosteus aculeatus]]'', [[three-spined stickleback]] (2006, 2012<ref>{{cite journal | vauthors = Jones FC, Grabherr MG, Chan YF, Russell P, Mauceli E, Johnson J, Swofford R, Pirun M, Zody MC, White S, Birney E, Searle S, Schmutz J, Grimwood J, Dickson MC, Myers RM, Miller CT, Summers BR, Knecht AK, Brady SD, Zhang H, Pollen AA, Howes T, Amemiya C, Baldwin J, Bloom T, Jaffe DB, Nicol R, Wilkinson J, Lander ES, Di Palma F, Lindblad-Toh K, Kingsley DM | display-authors = 6 | title = The genomic basis of adaptive evolution in threespine sticklebacks | journal = Nature | volume = 484 | issue = 7392 | pages = 55–61 | date = April 2012 | pmid = 22481358 | pmc = 3322419 | doi = 10.1038/nature10944 | bibcode = 2012Natur.484...55. }}</ref>)
* Order [[Gobiiformes]]
** ''[[Oxyeleotris marmorata]],'' marble goby (2020<ref>{{Citation| vauthors = Fan G, Song Y, Yang L, Huang X, Zhang S, Zhang M, Yang X, Chang Y, Zhang H, Li Y, Liu S, Yu L, Chu J, Seim I, Feng C, Near TJ, Wing RA, Wang W, Wang K, Wang J, Xu X, Yang H, Liu X, Chen N, He S | display-authors = 6 |title=Genomic data of the marble goby, Oxyeleotris marmorata |date=2020|url=http://gigadb.org/dataset/102185|publisher=GigaScience Database|language=en|doi=10.5524/102185|access-date=2020-08-19 }}</ref><ref name=":13" />)
* Order [[Gymnotiformes]]
**''[[Electrophorus electricus]]'', [[electric eel]] (2014)<ref>{{cite journal | vauthors = Gallant JR, Traeger LL, Volkening JD, Moffett H, Chen PH, Novina CD, Phillips GN, Anand R, Wells GB, Pinch M, Güth R, Unguez GA, Albert JS, Zakon HH, Samanta MP, Sussman MR | display-authors = 6 | title = Nonhuman genetics. Genomic basis for the convergent evolution of electric organs | journal = Science | volume = 344 | issue = 6191 | pages = 1522–5 | date = June 2014 | pmid = 24970089 | pmc = 5541775 | doi = 10.1126/science.1254432 }}</ref>
* Order [[Lepisosteiformes]]
** ''[[Lepisosteus oculatus]]'', [[spotted gar]]<ref>{{cite web |url=http://www.ensembl.org/Lepisosteus_oculatus/Info/Index |title=Spotted gar |website=Ensembl |access-date=11 September 2014}}</ref>
* Order [[Osmeriformes]]
** ''[[Protosalanx]] hyalocranius'', clearhead [[Protosalanx|icefish]] (2017<ref>{{cite journal | vauthors = Liu K, Xu D, Li J, Bian C, Duan J, Zhou Y, Zhang M, You X, You Y, Chen J, Yu H, Xu G, Fang DA, Qiang J, Jiang S, He J, Xu J, Shi Q, Zhang Z, Xu P | display-authors = 6 | title = Whole genome sequencing of Chinese clearhead icefish, Protosalanx hyalocranius | journal = GigaScience | volume = 6 | issue = 4 | pages = 1–6 | date = April 2017 | pmid = 28327943 | pmc = 5530312 | doi = 10.1093/gigascience/giw012 }}</ref>)
* Order [[Osteoglossiformes]]
** ''[[African arowana|Heterotis niloticus]]'', African arowana (2020<ref>{{Citation| vauthors = Fan G, Song Y, Yang L, Huang X, Zhang S, Zhang M, Yang X, Chang Y, Zhang H, Li Y, Liu S, Yu L, Chu J, Seim I, Feng C, Near TJ, Wing RA, Wang W, Wang K, Wang J, Xu X, Yang H, Liu X, Chen N, He S | display-authors = 6 |title=Genome data of the African bonytongue, Heterotis niloticus|date=2020|url=http://gigadb.org/dataset/102184|publisher=GigaScience Database|language=en|doi=10.5524/102184|access-date=2020-08-19}}</ref><ref name=":13" />)
** ''[[Asian arowana|Scleropages formosus]],'' Asian arowana (2016<ref>{{cite journal | vauthors = Bian C, Hu Y, Ravi V, Kuznetsova IS, Shen X, Mu X, Sun Y, You X, Li J, Li X, Qiu Y, Tay BH, Thevasagayam NM, Komissarov AS, Trifonov V, Kabilov M, Tupikin A, Luo J, Liu Y, Song H, Liu C, Wang X, Gu D, Yang Y, Li W, Polgar G, Fan G, Zeng P, Zhang H, Xiong Z, Tang Z, Peng C, Ruan Z, Yu H, Chen J, Fan M, Huang Y, Wang M, Zhao X, Hu G, Yang H, Wang J, Wang J, Xu X, Song L, Xu G, Xu P, Xu J, O'Brien SJ, Orbán L, Venkatesh B, Shi Q | display-authors = 6 | title = The Asian arowana (Scleropages formosus) genome provides new insights into the evolution of an early lineage of teleosts | journal = Scientific Reports | volume = 6 | issue = 1 | pages = 24501 | date = April 2016 | pmid = 27089831 | pmc = 4835728 | doi = 10.1038/srep24501 | bibcode = 2016NatSR...624501B }}</ref>)
* Order [[Perciformes]]
** ''[[Melon butterflyfish|Chaetodon trifasciatus]]'', melon butterflyfish (2020<ref>{{Cite journal|title= Genomic data of the melon butterflyfish, Chaetodon trifasciatus|year=2020|language=en|doi=10.5524/102187| vauthors = Fan G, Song Y, Yang L, Huang X, Zhang S, Zhang M, Yang X, Chang Y, Zhang H, Li Y, Liu S, Yu L, Chu J, Seim I, Feng C, Near TJ, Wing RA, Wang W, Wang K, Wang J, Xu X, Yang H, Liu X, Chen N, He S | display-authors = 6 |publisher=GigaScience Database}}</ref><ref name=":13" />)
** [[Northern snakehead|''Channa argus'', northern snakehead]] (2017<ref>{{cite journal | vauthors = Xu J, Bian C, Chen K, Liu G, Jiang Y, Luo Q, You X, Peng W, Li J, Huang Y, Yi Y, Dong C, Deng H, Zhang S, Zhang H, Shi Q, Xu P | display-authors = 6 | title = Draft genome of the Northern snakehead, Channa argus | journal = GigaScience | volume = 6 | issue = 4 | pages = 1–5 | date = April 2017 | pmid = 28327946 | pmc = 5530311 | doi = 10.1093/gigascience/gix011 }}</ref>)
** ''[[Copperband butterflyfish|Chelmon rostratus]],'' copperband butterflyfish (2020<ref>{{Citation| vauthors = Fan G, Song Y, Yang L, Huang X, Zhang S, Zhang M, Yang X, Chang Y, Zhang H, Li Y, Liu S, Yu L, Chu J, Seim I, Feng C, Near TJ, Wing RA, Wang W, Wang K, Wang J, Xu X, Yang H, Liu X, Chen N, He S | display-authors = 6 |title=Genomic data of the copperband butterflyfish, Chelmon rostratus|date=2020|url=http://gigadb.org/dataset/102189|publisher=GigaScience Database|language=en|doi=10.5524/102189|access-date=2020-08-19 }}</ref><ref name=":13" />)
**''[[Antarctic toothfish|Dissostichus mawsoni]]'', [[Antarctic toothfish]] (2019<ref name=":6">{{cite journal | vauthors = Chen L, Lu Y, Li W, Ren Y, Yu M, Jiang S, Fu Y, Wang J, Peng S, Bilyk KT, Murphy KR, Zhuang X, Hune M, Zhai W, Wang W, Xu Q, Cheng CC | display-authors = 6 | title = The genomic basis for colonizing the freezing Southern Ocean revealed by Antarctic toothfish and Patagonian robalo genomes | journal = GigaScience | volume = 8 | issue = 4 | date = April 2019 | pmid = 30715292 | pmc = 6457430 | doi = 10.1093/gigascience/giz016 }}</ref>)
**''[[Eleginops maclovinus]]'', [[Patagonian robalo]] (2019<ref name=":6" />)
**[[Larimichthys crocea|Larimichthys crocea, large yellow croaker]] (2014<ref>{{cite journal | vauthors = Wu C, Zhang D, Kan M, Lv Z, Zhu A, Su Y, Zhou D, Zhang J, Zhang Z, Xu M, Jiang L, Guo B, Wang T, Chi C, Mao Y, Zhou J, Yu X, Wang H, Weng X, Jin JG, Ye J, He L, Liu Y | display-authors = 6 | title = The draft genome of the large yellow croaker reveals well-developed innate immunity | journal = Nature Communications | volume = 5 | pages = 5227 | date = November 2014 | pmid = 25407894 | pmc = 4263168 | doi = 10.1038/ncomms6227 | bibcode = 2014NatCo...5.5227W }}</ref>)
**''[[Northern red snapper|Lutjanus campechanus]]'', Northern red snapper (2020<ref>{{cite journal | vauthors = Norrell AE, Jones KL, Saillant EA | title = Development and characterization of genomic resources for a non-model marine teleost, the red snapper (Lutjanus campechanus, Lutjanidae): Construction of a high-density linkage map, anchoring of genome contigs and comparative genomic analysis | journal = PLOS ONE | volume = 15 | issue = 4 | pages = e0232402 | date = 2020-04-29 | pmid = 32348345 | doi = 10.1371/journal.pone.0232402 | pmc = 7190162 | bibcode = 2020PLoSO..1532402N }}</ref>)
** ''[[Naso vlamingii]],'' bignose unicornfish (2020<ref>{{Cite journal|title= Genomic data of the bignose unicornfish, Naso vlamingii|year=2020|language=en|doi=10.5524/102188| vauthors = Fan G, Song Y, Yang L, Huang X, Zhang S, Zhang M, Yang X, Chang Y, Zhang H, Li Y, Liu S, Yu L, Chu J, Seim I, Feng C, Near TJ, Wing RA, Wang W, Wang K, Wang J, Xu X, Yang H, Liu X, Chen N, He S | display-authors = 6 |publisher=GigaScience Database}}</ref><ref name=":13" />)
**''[[Parachaenichthys]] charcoti'', Antarctic dragonfish (2017<ref>{{cite journal | vauthors = Ahn DH, Shin SC, Kim BM, Kang S, Kim JH, Ahn I, Park J, Park H | title = Draft genome of the Antarctic dragonfish, Parachaenichthys charcoti | journal = GigaScience | volume = 6 | issue = 8 | pages = 1–6 | date = August 2017 | pmid = 28873966 | pmc = 5597851 | doi = 10.1093/gigascience/gix060 }}</ref>)
**''[[Greater amberjack|Seriola dumerili]]'', [[Greater amberjack]] (2017<ref>{{cite journal | vauthors = Sarropoulou E, Sundaram AY, Kaitetzidou E, Kotoulas G, Gilfillan GD, Papandroulakis N, Mylonas CC, Magoulas A | display-authors = 6 | title = Full genome survey and dynamics of gene expression in the greater amberjack Seriola dumerili | journal = GigaScience | volume = 6 | issue = 12 | pages = 1–13 | date = December 2017 | pmid = 29126158 | pmc = 5751066 | doi = 10.1093/gigascience/gix108 }}</ref>)
**''[[Chinese sillago|Sillago sinica]]'', [[chinese sillago]] (2018<ref>{{cite journal | vauthors = Xu S, Xiao S, Zhu S, Zeng X, Luo J, Liu J, Gao T, Chen N | display-authors = 6 | title = A draft genome assembly of the Chinese sillago (Sillago sinica), the first reference genome for Sillaginidae fishes | journal = GigaScience | volume = 7 | issue = 9 | date = September 2018 | pmid = 30202912 | pmc = 6143730 | doi = 10.1093/gigascience/giy108 }}</ref>)
**''[[Siniperca]] knerii,'' Big-Eye Mandarin Fish (2020<ref>{{cite journal | vauthors = Lu L, Zhao J, Li C | title = High-Quality Genome Assembly and Annotation of the Big-Eye Mandarin Fish (<i>Siniperca knerii</i>) | journal = G3 | volume = 10 | issue = 3 | pages = 877–880 | date = March 2020 | pmid = 31953307 | pmc = 7056987 | doi = 10.1534/g3.119.400930 }}</ref>)
**''[[Gilt-head bream|Sparus aurata]]'', gilt-head bream (2018<ref>{{cite journal | vauthors = Pauletto M, Manousaki T, Ferraresso S, Babbucci M, Tsakogiannis A, Louro B, Vitulo N, Quoc VH, Carraro R, Bertotto D, Franch R, Maroso F, Aslam ML, Sonesson AK, Simionati B, Malacrida G, Cestaro A, Caberlotto S, Sarropoulou E, Mylonas CC, Power DM, Patarnello T, Canario AV, Tsigenopoulos C, Bargelloni L | display-authors = 6 | title = Sparus aurata reveals the evolutionary dynamics of sex-biased genes in a sequential hermaphrodite fish | journal = Communications Biology | volume = 1 | issue = 1 | pages = 119 | date = 2018-08-17 | pmid = 30271999 | pmc = 6123679 | doi = 10.1038/s42003-018-0122-7 }}</ref>)
* Order [[Salmoniformes]]
** [[Atlantic salmon|''Salmo salar'', Atlantic salmon]] (2016<ref>{{cite journal | vauthors = Lien S, Koop BF, Sandve SR, Miller JR, Kent MP, Nome T, Hvidsten TR, Leong JS, Minkley DR, Zimin A, Grammes F, Grove H, Gjuvsland A, Walenz B, Hermansen RA, von Schalburg K, Rondeau EB, Di Genova A, Samy JK, Olav Vik J, Vigeland MD, Caler L, Grimholt U, Jentoft S, Våge DI, de Jong P, Moen T, Baranski M, Palti Y, Smith DR, Yorke JA, Nederbragt AJ, Tooming-Klunderud A, Jakobsen KS, Jiang X, Fan D, Hu Y, Liberles DA, Vidal R, Iturra P, Jones SJ, Jonassen I, Maass A, Omholt SW, Davidson WS | s2cid = 4398298 | display-authors = 6 | title = The Atlantic salmon genome provides insights into rediploidization | journal = Nature | volume = 533 | issue = 7602 | pages = 200–5 | date = May 2016 | pmid = 27088604 | doi = 10.1038/nature17164 | bibcode = 2016Natur.533..200L }}</ref>)
** ''[[Oncorhynchus mykiss]]'', [[rainbow trout]] (2014<ref>{{cite journal | vauthors = Berthelot C, Brunet F, Chalopin D, Juanchich A, Bernard M, Noël B, Bento P, Da Silva C, Labadie K, Alberti A, Aury JM, Louis A, Dehais P, Bardou P, Montfort J, Klopp C, Cabau C, Gaspin C, Thorgaard GH, Boussaha M, Quillet E, Guyomard R, Galiana D, Bobe J, Volff JN, Genêt C, Wincker P, Jaillon O, Roest Crollius H, Guiguen Y | display-authors = 6 | title = The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates | journal = Nature Communications | volume = 5 | pages = 3657 | date = April 2014 | pmid = 24755649 | pmc = 4071752 | doi = 10.1038/ncomms4657 | bibcode = 2014NatCo...5.3657B }}</ref>)
** [[Chinook salmon|''Oncorhynchus tshawytscha'', Chinook salmon]] (2018<ref>{{cite journal | vauthors = Christensen KA, Leong JS, Sakhrani D, Biagi CA, Minkley DR, Withler RE, Rondeau EB, Koop BF, Devlin RH | display-authors = 6 | title = Chinook salmon (Oncorhynchus tshawytscha) genome and transcriptome | journal = PLOS ONE | volume = 13 | issue = 4 | pages = e0195461 | date = 2018-04-05 | pmid = 29621340 | pmc = 5886536 | doi = 10.1371/journal.pone.0195461 | bibcode = 2018PLoSO..1395461C }}</ref><ref>{{cite journal | vauthors = Narum SR, Di Genova A, Micheletti SJ, Maass A | title = Genomic variation underlying complex life-history traits revealed by genome sequencing in Chinook salmon | journal = Proceedings. Biological Sciences | volume = 285 | issue = 1883 | pages = 20180935 | date = July 2018 | pmid = 30051839 | pmc = 6083255 | doi = 10.1098/rspb.2018.0935 }}</ref>)
* Order [[Scorpaeniformes]]
** ''[[Sebastes schlegelii]]'', [[Black rockfish]] (2018<ref>{{cite journal | vauthors = He Y, Chang Y, Bao L, Yu M, Li R, Niu J, Fan G, Song W, Seim I, Qin Y, Li X, Liu J, Kong X, Peng M, Sun M, Wang M, Qu J, Wang X, Liu X, Wu X, Zhao X, Wang X, Zhang Y, Guo J, Liu Y, Liu K, Wang Y, Zhang H, Liu L, Wang M, Yu H, Wang X, Cheng J, Wang Z, Xu X, Wang J, Yang H, Lee SM, Liu X, Zhang Q, Qi J | display-authors = 6 | title = A chromosome-level genome of black rockfish, Sebastes schlegelii, provides insights into the evolution of live birth | journal = Molecular Ecology Resources | issue = 5 | pages = 1309–1321 | date = May 2019 | volume = 19 | pmid = 31077549 | doi = 10.1111/1755-0998.13034 | s2cid = 149454779 | url = https://eprints.qut.edu.au/132160/1/132160-postprint.pdf }}</ref>)
* Order [[Siluriformes]]
** ''[[Ictalurus punctatus]]'', [[channel catfish]] (2016<ref>{{cite journal | vauthors = Liu Z, Liu S, Yao J, Bao L, Zhang J, Li Y, Jiang C, Sun L, Wang R, Zhang Y, Zhou T, Zeng Q, Fu Q, Gao S, Li N, Koren S, Jiang Y, Zimin A, Xu P, Phillippy AM, Geng X, Song L, Sun F, Li C, Wang X, Chen A, Jin Y, Yuan Z, Yang Y, Tan S, Peatman E, Lu J, Qin Z, Dunham R, Li Z, Sonstegard T, Feng J, Danzmann RG, Schroeder S, Scheffler B, Duke MV, Ballard L, Kucuktas H, Kaltenboeck L, Liu H, Armbruster J, Xie Y, Kirby ML, Tian Y, Flanagan ME, Mu W, Waldbieser GC | display-authors = 6 | title = The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts | journal = Nature Communications | volume = 7 | pages = 11757 | date = June 2016 | pmid = 27249958 | pmc = 4895719 | doi = 10.1038/ncomms11757 | bibcode = 2016NatCo...711757L }}</ref>)
**''[[Wels catfish|Silurus glanis]]'', Wels catfish (2020<ref>{{cite journal | vauthors = Ozerov MY, Flajšhans M, Noreikiene K, Vasemägi A, Gross R | title = Draft Genome Assembly of the Freshwater Apex Predator Wels Catfish (<i>Silurus glanis</i>) Using Linked-Read Sequencing | journal = G3 | volume = 10 | issue = 11 | pages = 3897–3906 | date = November 2020 | pmid = 32917720 | pmc = 7642921 | doi = 10.1534/g3.120.401711 | url = https://www.g3journal.org/content/10/11/3897 | s2cid = 221636677 }}</ref>)
* Order [[Spariformes]]
** ''[[Siamese tigerfish|Datnioides pulcher]],'' Siamese tigerfish (2020<ref>{{Cite journal|title= Genomic data of the Siamese tigerfish, Datnioides pulcher|year=2020|language=en|doi=10.5524/102186| vauthors = Fan G, Song Y, Yang L, Huang X, Zhang S, Zhang M, Yang X, Chang Y, Zhang H, Li Y, Liu S, Yu L, Chu J, Seim I, Feng C, Near TJ, Wing RA, Wang W, Wang K, Wang J, Xu X, Yang H, Liu X, Chen N, He S | display-authors = 6 |publisher=GigaScience Database}}</ref><ref name=":13" />)
** ''[[Datnioides undecimradiatus]]'', Mekong tiger perch (2020<ref>{{cite journal | vauthors = Sun S, Wang Y, Zeng W, Du X, Li L, Hong X, Huang X, Zhang H, Zhang M, Fan G, Liu X, Liu S | display-authors = 6 | title = The genome of Mekong tiger perch (Datnioides undecimradiatus) provides insights into the phylogenetic position of Lobotiformes and biological conservation | journal = Scientific Reports | volume = 10 | issue = 1 | pages = 8164 | date = May 2020 | pmid = 32424221 | pmc = 7235238 | doi = 10.1038/s41598-020-64398-2 | s2cid = 218670972 | bibcode = 2020NatSR..10.8164S }}</ref>)
* Order [[Tetraodontiformes]]
** ''[[Long-spine porcupinefish|Diodon holocanthus]],'' Long-spine porcupinefish (2020<ref>{{Cite journal|title= Genome data of the long-spine porcupinefish, Diodon holocanthus|year=2020|language=en|doi=10.5524/102183| vauthors = Fan G, Song Y, Yang L, Huang X, Zhang S, Zhang M, Yang X, Chang Y, Zhang H, Li Y, Liu S, Yu L, Chu J, Seim I, Feng C, Near TJ, Wing RA, Wang W, Wang K, Wang J, Xu X, Yang H, Liu X, Chen N, He S | display-authors = 6 |publisher=GigaScience Database}}</ref><ref name=":13" />)
** ''[[Ocean sunfish|Mola mola]], [[Ocean sunfish|o]]''[[Ocean sunfish|cean sunfish]] (2016<ref>{{cite journal | vauthors = Pan H, Yu H, Ravi V, Li C, Lee AP, Lian MM, Tay BH, Brenner S, Wang J, Yang H, Zhang G, Venkatesh B | display-authors = 6 | title = The genome of the largest bony fish, ocean sunfish (Mola mola), provides insights into its fast growth rate | journal = GigaScience | volume = 5 | issue = 1 | pages = 36 | date = September 2016 | pmid = 27609345 | pmc = 5016917 | doi = 10.1186/s13742-016-0144-3 }}</ref>)
**''[[Takifugu rubripes]]'', a [[puffer fish]]<ref>{{cite web |publisher=International Fugu Genome Consortium |url=http://www.fugu-sg.org/index.html |title=Fourth Genome Assembly |website=Fugu Genome Project |url-status=dead |archive-url=https://web.archive.org/web/20100131011400/http://www.fugu-sg.org/index.html |archive-date=2010-01-31}}</ref> (International Fugu Genome Consortium 2002<ref>{{cite journal | vauthors = Aparicio S, Chapman J, Stupka E, Putnam N, Chia JM, Dehal P, Christoffels A, Rash S, Hoon S, Smit A, Gelpke MD, Roach J, Oh T, Ho IY, Wong M, Detter C, Verhoef F, Predki P, Tay A, Lucas S, Richardson P, Smith SF, Clark MS, Edwards YJ, Doggett N, Zharkikh A, Tavtigian SV, Pruss D, Barnstead M, Evans C, Baden H, Powell J, Glusman G, Rowen L, Hood L, Tan YH, Elgar G, Hawkins T, Venkatesh B, Rokhsar D, Brenner S | s2cid = 10310355 | display-authors = 6 | title = Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes | journal = Science | volume = 297 | issue = 5585 | pages = 1301–10 | date = August 2002 | pmid = 12142439 | doi = 10.1126/science.1072104 | bibcode = 2002Sci...297.1301A | url = https://semanticscholar.org/paper/8f7e546850c4be68fa610265b3ad0797e0733b79 }}</ref>)
**''[[Tetraodon nigroviridis]]'', a [[puffer fish]] (2004<ref name="Jaillon">{{cite journal | vauthors = Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, Mauceli E, Bouneau L, Fischer C, Ozouf-Costaz C, Bernot A, Nicaud S, Jaffe D, Fisher S, Lutfalla G, Dossat C, Segurens B, Dasilva C, Salanoubat M, Levy M, Boudet N, Castellano S, Anthouard V, Jubin C, Castelli V, Katinka M, Vacherie B, Biémont C, Skalli Z, Cattolico L, Poulain J, De Berardinis V, Cruaud C, Duprat S, Brottier P, Coutanceau JP, Gouzy J, Parra G, Lardier G, Chapple C, McKernan KJ, McEwan P, Bosak S, Kellis M, Volff JN, Guigó R, Zody MC, Mesirov J, Lindblad-Toh K, Birren B, Nusbaum C, Kahn D, Robinson-Rechavi M, Laudet V, Schachter V, Quétier F, Saurin W, Scarpelli C, Wincker P, Lander ES, Weissenbach J, Roest Crollius H | s2cid = 4414316 | display-authors = 6 | title = Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype | journal = Nature | volume = 431 | issue = 7011 | pages = 946–57 | date = October 2004 | pmid = 15496914 | doi = 10.1038/nature03025 | bibcode = 2004Natur.431..946J }}</ref>)

===Amphibians===
* ''[[Ambystoma mexicanum]]'', axolotl (2018)<ref>{{cite journal | vauthors = Nowoshilow S, Schloissnig S, Fei JF, Dahl A, Pang AW, Pippel M, Winkler S, Hastie AR, Young G, Roscito JG, Falcon F, Knapp D, Powell S, Cruz A, Cao H, Habermann B, Hiller M, Tanaka EM, Myers EW | display-authors = 6 | title = The axolotl genome and the evolution of key tissue formation regulators | journal = Nature | volume = 554 | issue = 7690 | pages = 50–55 | date = February 2018 | pmid = 29364872 | doi = 10.1038/nature25458 | bibcode = 2018Natur.554...50N }}</ref>
* ''[[Leptobrachium leishanense]]'', Leishan Moustache toad (2019)<ref>{{cite journal | vauthors = Li J, Yu H, Wang W, Fu C, Zhang W, Han F, Wu H | title = Genomic and transcriptomic insights into molecular basis of sexually dimorphic nuptial spines in ''Leptobrachium leishanense'' | journal = Nature Communications | volume = 10 | issue = 1 | pages = 5551 | date = December 2019 | pmid = 31804492 | doi = 10.1038/s41467-019-13531-5 | pmc = 6895153 | bibcode = 2019NatCo..10.5551L }}</ref>
*[[Limnodynastes dumerilii|''Limnodynastes dumerilii dumerilii'']], Eastern banjo frog (2020<ref>{{Cite journal | vauthors = Li Q, Guo Q, Zhou Y, Tan H, Bertozzi T, Zhu Y, Li J, Donnellan S, Zhang G | display-authors = 6 |title=A draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae)| doi = 10.46471/gigabyte.2 | journal =Gigabyte| year = 2020 | volume = 2020 | pages = 1–13 |language=en}}</ref>)
*''[[Nanorana parkeri]]'', High Himalaya frog (2015)<ref>{{cite journal | vauthors = Sun YB, Xiong ZJ, Xiang XY, Liu SP, Zhou WW, Tu XL, Zhong L, Wang L, Wu DD, Zhang BL, Zhu CL, Yang MM, Chen HM, Li F, Zhou L, Feng SH, Huang C, Zhang GJ, Irwin D, Hillis DM, Murphy RW, Yang HM, Che J, Wang J, Zhang YP | display-authors = 6 | title = Whole-genome sequence of the Tibetan frog Nanorana parkeri and the comparative evolution of tetrapod genomes | journal = Proceedings of the National Academy of Sciences of the United States of America | volume = 112 | issue = 11 | pages = E1257-62 | date = March 2015 | pmid = 25733869 | pmc = 4371989 | doi = 10.1073/pnas.1501764112 | bibcode = 2015PNAS..112E1257S }}</ref>
* ''[[Strawberry poison-dart frog|Oophaga pumilio]]'', [[Strawberry poison-dart frog]] (2018<ref>{{cite journal | vauthors = Rogers RL, Zhou L, Chu C, Márquez R, Corl A, Linderoth T, Freeborn L, MacManes MD, Xiong Z, Zheng J, Guo C, Xun X, Kronforst MR, Summers K, Wu Y, Yang H, Richards-Zawacki CL, Zhang G, Nielsen R | display-authors = 6 | title = Genomic Takeover by Transposable Elements in the Strawberry Poison Frog | journal = Molecular Biology and Evolution | volume = 35 | issue = 12 | pages = 2913–2927 | date = December 2018 | pmid = 30517748 | pmc = 6278860 | doi = 10.1093/molbev/msy185 }}</ref>)
*''[[African bullfrog|Pyxicephalus adspersus]],'' African bullfrog (2018<ref>{{cite journal| vauthors = Denton RD, Kudra RS, Malcom JW, Du Preez L, Malone JH |date=2018-11-20|title=The African Bullfrog (Pyxicephalus adspersus) genome unites the two ancestral ingredients for making vertebrate sex chromosomes |journal=bioRxiv|language=en|pages=329847|doi=10.1101/329847|s2cid=90800869}}</ref>)
* ''[[American bullfrog|Rana [Lithobates] catesbeiana]]'', North American bullfrog (2017)<ref>{{cite journal | vauthors = Hammond SA, Warren RL, Vandervalk BP, Kucuk E, Khan H, Gibb EA, Pandoh P, Kirk H, Zhao Y, Jones M, Mungall AJ, Coope R, Pleasance S, Moore RA, Holt RA, Round JM, Ohora S, Walle BV, Veldhoen N, Helbing CC, Birol I | title = The North American bullfrog draft genome provides insight into hormonal regulation of long noncoding RNA | journal = Nature Communications | volume = 8 | issue = 1 | pages = 1433 | date = November 2017 | pmid = 29127278 | pmc = 5681567 | doi = 10.1038/s41467-017-01316-7 | bibcode = 2017NatCo...8.1433H }}</ref>
* [[Cane toad|''Rhinella marina'', Cane toad]] (2018)<ref>{{cite journal | vauthors = Edwards RJ, Tuipulotu DE, Amos TG, O'Meally D, Richardson MF, Russell TL, Vallinoto M, Carneiro M, Ferrand N, Wilkins MR, Sequeira F, Rollins LA, Holmes EC, Shine R, White PA | display-authors = 6 | title = Draft genome assembly of the invasive cane toad, Rhinella marina | journal = GigaScience | volume = 7 | issue = 9 | date = August 2018 | pmid = 30101298 | pmc = 6145236 | doi = 10.1093/gigascience/giy095 }}</ref>
* ''[[Vibrissaphora ailaonica]]'', Moustache toad (2019)<ref>{{cite journal | vauthors = Li Y, Ren Y, Zhang D, Jiang H, Wang Z, Li X, Rao D | title = Chromosome-level assembly of the mustache toad genome using third-generation DNA sequencing and Hi-C analysis | journal = GigaScience | volume = 8 | issue = 9 | date = September 2019 | pmid = 31544214 | pmc = 6755253 | doi = 10.1093/gigascience/giz114 }}</ref>
* ''[[Xenopus tropicalis]]'', [[western clawed frog]] (2010)<ref>{{cite journal | vauthors = Hellsten U, Harland RM, Gilchrist MJ, Hendrix D, Jurka J, Kapitonov V, Ovcharenko I, Putnam NH, Shu S, Taher L, Blitz IL, Blumberg B, Dichmann DS, Dubchak I, Amaya E, Detter JC, Fletcher R, Gerhard DS, Goodstein D, Graves T, Grigoriev IV, Grimwood J, Kawashima T, Lindquist E, Lucas SM, Mead PE, Mitros T, Ogino H, Ohta Y, Poliakov AV, Pollet N, Robert J, Salamov A, Sater AK, Schmutz J, Terry A, Vize PD, Warren WC, Wells D, Wills A, Wilson RK, Zimmerman LB, Zorn AM, Grainger R, Grammer T, Khokha MK, Richardson PM, Rokhsar DS | display-authors = 6 | title = The genome of the Western clawed frog Xenopus tropicalis | journal = Science | volume = 328 | issue = 5978 | pages = 633–6 | date = April 2010 | pmid = 20431018 | pmc = 2994648 | doi = 10.1126/science.1183670 | bibcode = 2010Sci...328..633H }}</ref>

===Reptiles===
* Order [[Crocodylia]]
** ''[[Alligator mississippiensis]]'', American alligator (2012)<ref name="John A St John 415">{{cite journal | vauthors = St John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, Drew JC, Edwards SV, Faircloth BC, Fujita MK, Greenwold MJ, Hoffmann FG, Howard JM, Iguchi T, Janes DE, Khan SY, Kohno S, de Koning AJ, Lance SL, McCarthy FM, McCormack JE, Merchant ME, Peterson DG, Pollock DD, Pourmand N, Raney BJ, Roessler KA, Sanford JR, Sawyer RH, Schmidt CJ, Triplett EW, Tuberville TD, Venegas-Anaya M, Howard JT, Jarvis ED, Guillette LJ, Glenn TC, Green RE, Ray DA | display-authors = 6 | title = Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes | journal = Genome Biology | volume = 13 | issue = 1 | pages = 415 | date = January 2012 | pmid = 22293439 | pmc = 3334581 | doi = 10.1186/gb-2012-13-1-415}}</ref>
** ''[[Chinese alligator|Alligator sinensis]]'', Chinese alligator (2013, 2014)<ref>{{cite journal | vauthors = Wan QH, Pan SK, Hu L, Zhu Y, Xu PW, Xia JQ, Chen H, He GY, He J, Ni XW, Hou HL, Liao SG, Yang HQ, Chen Y, Gao SK, Ge YF, Cao CC, Li PF, Fang LM, Liao L, Zhang S, Wang MZ, Dong W, Fang SG | display-authors = 6 | title = Genome analysis and signature discovery for diving and sensory properties of the endangered Chinese alligator | journal = Cell Research | volume = 23 | issue = 9 | pages = 1091–105 | date = September 2013 | pmid = 23917531 | pmc = 3760627 | doi = 10.1038/cr.2013.104 }}</ref><ref>{{cite journal | vauthors = Wan QH, Pan SK, Hu L, Zhu Y, Xu PW, Xia JQ, Chen H, He GY, He J, Ni XW, Hou HL, Liao SG, Yang HQ, Chen Y, Gao SK, Ge YF, Cao CC, Li PF, Fang LM, Liao L, Zhang S, Wang MZ, Dong W, Fang SG | display-authors = 6 | title = Genomic data of the Chinese alligator (''Alligator sinensis'') | chapter = Genomic | date = March 28, 2014 | doi = 10.5524/100077 | journal = GigaScience Database }}</ref>
** ''[[Crocodylus porosus]]'', salt water crocodile (2012)<ref name="John A St John 415"/>
** ''[[Gavialis gangeticus]]'', Indian gharial (2012)<ref name="John A St John 415"/>
* Order [[Rhynchocephalia]]
**''Sphenodon punctatus'', tuatara (2020)<ref>{{cite journal | vauthors = Gemmell NJ, Rutherford K, Prost S, Tollis M, Winter D, Macey JR, Adelson DL, Suh A, Bertozzi T, Grau JH, Organ C, Gardner PP, Muffato M, Patricio M, Billis K, Martin FJ, Flicek P, Petersen B, Kang L, Michalak P, Buckley TR, Wilson M, Cheng Y, Miller H, Schott RK, Jordan MD, Newcomb RD, Arroyo JI, Valenzuela N, Hore TA, Renart J, Peona V, Peart CR, Warmuth VM, Zeng L, Kortschak RD, Raison JM, Zapata VV, Wu Z, Santesmasses D, Mariotti M, Guigó R, Rupp SM, Twort VG, Dussex N, Taylor H, Abe H, Bond DM, Paterson JM, Mulcahy DG, Gonzalez VL, Barbieri CG, DeMeo DP, Pabinger S, Van Stijn T, Clarke S, Ryder O, Edwards SV, Salzberg SL, Anderson L, Nelson N, Stone C | display-authors = 6 | title = The tuatara genome reveals ancient features of amniote evolution | journal = Nature | volume = 584 | issue = 7821 | pages = 403–409 | date = August 2020 | pmid = 32760000 | pmc = 7116210 | doi = 10.1038/s41586-020-2561-9 | url = https://www.nature.com/articles/s41586-020-2561-9 }}</ref>
* Order [[Squamata]]
** ''[[Anolis carolinensis]]'' <small>JBL SC #1</small>, Carolina [[anole]] (2011<ref>{{cite journal | vauthors = Alföldi J, Di Palma F, Grabherr M, Williams C, Kong L, Mauceli E, Russell P, Lowe CB, Glor RE, Jaffe JD, Ray DA, Boissinot S, Shedlock AM, Botka C, Castoe TA, Colbourne JK, Fujita MK, Moreno RG, ten Hallers BF, Haussler D, Heger A, Heiman D, Janes DE, Johnson J, de Jong PJ, Koriabine MY, Lara M, Novick PA, Organ CL, Peach SE, Poe S, Pollock DD, de Queiroz K, Sanger T, Searle S, Smith JD, Smith Z, Swofford R, Turner-Maier J, Wade J, Young S, Zadissa A, Edwards SV, Glenn TC, Schneider CJ, Losos JB, Lander ES, Breen M, Ponting CP, Lindblad-Toh K | display-authors = 6 | title = The genome of the green anole lizard and a comparative analysis with birds and mammals | journal = Nature | volume = 477 | issue = 7366 | pages = 587–91 | date = August 2011 | pmid = 21881562 | pmc = 3184186 | doi = 10.1038/nature10390 | bibcode = 2011Natur.477..587A }}</ref>)
** ''[[Dopasia gracilis]]'', Burmese glass lizard, (2015)<ref>{{cite journal | vauthors = Song B, Cheng S, Sun Y, Zhong X, Jin J, Guan R, Murphy RW, Che J, Zhang Y, Liu X | title = A genome draft of the legless anguid lizard, Ophisaurus gracilis | journal = GigaScience | volume = 4 | pages = 17 | year = 2015 | pmid = 25859342 | pmc = 4391233 | doi = 10.1186/s13742-015-0056-7 }}</ref>
** ''[[Emydocephalus ijimae]]'', Ijima's turtle-headed sea snake, (2019)<ref name="Kishida2019" />
** ''[[Common leopard gecko|Eublepharis macularius]]'', Leopard gecko (2016)<ref>{{cite journal | vauthors = Xiong Z, Li F, Li Q, Zhou L, Gamble T, Zheng J, Kui L, Li C, Li S, Yang H, Zhang G | display-authors = 6 | title = Draft genome of the leopard gecko, ''Eublepharis macularius'' | journal = GigaScience | volume = 5 | issue = 1 | pages = 47 | date = October 2016 | pmid = 27784328 | pmc = 5080775 | doi = 10.1186/s13742-016-0151-4 }}</ref>
** ''[[Hydrophis melanocephalus]]'', slender-necked sea snake, (2019)<ref name="Kishida2019" />
** ''[[Laticauda colubrina]]'', yellow-lipped sea krait, (2019)<ref name="Kishida2019">{{cite journal | vauthors = Kishida T, Go Y, Tatsumoto S, Tatsumi K, Kuraku S, Toda M | title = Loss of olfaction in sea snakes provides new perspectives on the aquatic adaptation of amniotes | journal = Proceedings of the Royal Society B: Biological Sciences | volume = 286 | issue = 1910 | pages = 20191828 | year = 2019 | pmid = 31506057 | pmc = 6742997 | doi = 10.1098/rspb.2019.1828 }}</ref>
** ''[[Laticauda laticaudata]]'', blue-linged sea krait, (2019)<ref name="Kishida2019" />
** ''[[Ophiophagus hannah]]'', king cobra (2013)<ref>{{cite journal | vauthors = Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wüster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pla D, Sanz L, Hyder AS, Ribeiro JM, Arntzen JW, van den Thillart GE, Boetzer M, Pirovano W, Dirks RP, Spaink HP, Duboule D, McGlinn E, Kini RM, Richardson MK | display-authors = 6 | title = The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system | journal = Proceedings of the National Academy of Sciences of the United States of America | volume = 110 | issue = 51 | pages = 20651–6 | date = December 2013 | pmid = 24297900 | pmc = 3870661 | doi = 10.1073/pnas.1314702110 | bibcode = 2013PNAS..11020651V }}</ref>
** ''[[Corn snake|Pantherophis guttatus]]'', corn snake (2014)<ref>{{cite journal | vauthors = Ullate-Agote A, Milinkovitch MC, Tzika AC | title = The genome sequence of the corn snake (Pantherophis guttatus), a valuable resource for EvoDevo studies in squamates | journal = The International Journal of Developmental Biology | volume = 58 | issue = 10–12 | pages = 881–8 | date = 2015-07-02 | pmid = 26154328 | doi = 10.1387/ijdb.150060at }}</ref>
** ''[[Central bearded dragon|Pogona vitticeps]]'', Central bearded dragon (2015)<ref>{{cite journal | vauthors = Georges A, Li Q, Lian J, O'Meally D, Deakin J, Wang Z, Zhang P, Fujita M, Patel HR, Holleley CE, Zhou Y, Zhang X, Matsubara K, Waters P, Graves JA, Sarre SD, Zhang G | display-authors = 6 | title = High-coverage sequencing and annotated assembly of the genome of the Australian dragon lizard Pogona vitticeps | journal = GigaScience | volume = 4 | issue = 1 | pages = 45 | date = 2015-12-01 | pmid = 26421146 | pmc = 4585809 | doi = 10.1186/s13742-015-0085-2 }}</ref>
** ''[[Python bivittatus]]'', Burmese python (2013)<ref>{{cite journal | vauthors = Castoe TA, de Koning AP, Hall KT, Card DC, Schield DR, Fujita MK, Ruggiero RP, Degner JF, Daza JM, Gu W, Reyes-Velasco J, Shaney KJ, Castoe JM, Fox SE, Poole AW, Polanco D, Dobry J, Vandewege MW, Li Q, Schott RK, Kapusta A, Minx P, Feschotte C, Uetz P, Ray DA, Hoffmann FG, Bogden R, Smith EN, Chang BS, Vonk FJ, Casewell NR, Henkel CV, Richardson MK, Mackessy SP, Bronikowski AM, Bronikowsi AM, Yandell M, Warren WC, Secor SM, Pollock DD | display-authors = 6 | title = The Burmese python genome reveals the molecular basis for extreme adaptation in snakes | journal = Proceedings of the National Academy of Sciences of the United States of America | volume = 110 | issue = 51 | pages = 20645–50 | date = December 2013 | pmid = 24297902 | pmc = 3870669 | doi = 10.1073/pnas.1314475110 | bibcode = 2013PNAS..11020645C }}</ref>
** ''[[Argentine black and white tegu|Salvator merianae]]'', Argentine black and white tegu (2018<ref>{{cite journal | vauthors = Roscito JG, Sameith K, Pippel M, Francoijs KJ, Winkler S, Dahl A, Papoutsoglou G, Myers G, Hiller M | display-authors = 6 | title = The genome of the tegu lizard Salvator merianae: combining Illumina, PacBio, and optical mapping data to generate a highly contiguous assembly | journal = GigaScience | volume = 7 | issue = 12 | date = December 2018 | pmid = 30481296 | pmc = 6304105 | doi = 10.1093/gigascience/giy141 }}</ref>)
** ''[[Chinese crocodile lizard|Shinisaurus crocodilurus]]'', Chinese crocodile lizard, (2017)<ref>{{cite journal | vauthors = Gao J, Li Q, Wang Z, Zhou Y, Martelli P, Li F, Xiong Z, Wang J, Yang H, Zhang G | display-authors = 6 | title = Sequencing, de novo assembling, and annotating the genome of the endangered Chinese crocodile lizard Shinisaurus crocodilurus | journal = GigaScience | volume = 6 | issue = 7 | pages = 1–6 | date = July 2017 | pmid = 28595343 | pmc = 5569961 | doi = 10.1093/gigascience/gix041 }}</ref>
* Order [[Testudines]] (Chelonii)
** ''[[Chelonia mydas]]'', green sea turtle (2013<ref name="Wang2013">{{cite journal | vauthors = Wang Z, Pascual-Anaya J, Zadissa A, Li W, Niimura Y, Huang Z, Li C, White S, Xiong Z, Fang D, Wang B, Ming Y, Chen Y, Zheng Y, Kuraku S, Pignatelli M, Herrero J, Beal K, Nozawa M, Li Q, Wang J, Zhang H, Yu L, Shigenobu S, Wang J, Liu J, Flicek P, Searle S, Wang J, Kuratani S, Yin Y, Aken B, Zhang G, Irie N | display-authors = 6 | title = The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan | journal = Nature Genetics | volume = 45 | issue = 6 | pages = 701–706 | date = June 2013 | pmid = 23624526 | pmc = 4000948 | doi = 10.1038/ng.2615 }}</ref>)
** ''[[Chrysemys picta bellii]]'', [[western painted turtle]] (2013)<ref>{{cite journal | vauthors = Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, Bruneau BG, Buck LT, Capel B, Castoe TA, Czerwinski M, Delehaunty KD, Edwards SV, Fronick CC, Fujita MK, Fulton L, Graves TA, Green RE, Haerty W, Hariharan R, Hernandez O, Hillier LW, Holloway AK, Janes D, Janzen FJ, Kandoth C, Kong L, de Koning AP, Li Y, Literman R, McGaugh SE, Mork L, O'Laughlin M, Paitz RT, Pollock DD, Ponting CP, Radhakrishnan S, Raney BJ, Richman JM, St John J, Schwartz T, Sethuraman A, Spinks PQ, Storey KB, Thane N, Vinar T, Zimmerman LM, Warren WC, Mardis ER, Wilson RK | display-authors = 6 | title = The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage | journal = Genome Biology | volume = 14 | issue = 3 | pages = R28 | date = March 2013 | pmid = 23537068 | pmc = 4054807 | doi = 10.1186/gb-2013-14-3-r28 | author-link = H Bradley Shaffer }}</ref>
** ''[[Pelodiscus sinensis]]'', [[soft-shelled turtle]] (2013<ref name="Wang2013"/>)
** ''[[Big-headed turtle|Platysternon megacephalum]]'', [[Big-headed turtle]] (2019<ref>{{cite journal | vauthors = Cao D, Wang M, Ge Y, Gong S | title = Draft genome of the big-headed turtle Platysternon megacephalum | journal = Scientific Data | volume = 6 | issue = 1 | pages = 60 | date = May 2019 | pmid = 31097710 | pmc = 6522511 | doi = 10.1038/s41597-019-0067-9 | bibcode = 2019NatSD...6...60C }}</ref>)

===Birds===
* Order [[Accipitriformes]]
** ''[[Haliaeetus albicilla]]'', [[white-tailed eagle]] (2014)<ref name="Jarvis2014"/>
** ''[[Haliaeetus leucocephalus]]'', [[bald eagle]] (2014)<ref name="Jarvis2014"/>
** ''[[Aegypius monachus]]'', [[cinereous vulture]] (2015)
** ''[[Aquila chrysaetos]]'', [[golden eagle]] (2018)<ref>{{cite web|url=https://www.sanger.ac.uk/news/view/newly-sequenced-golden-eagle-genome-will-help-its-conservation|title=Golden Eagle Genome Sequenced}}</ref>
* Order [[Anseriformes]]
** ''[[Anas platyrhynchos]]'', [[mallard duck]] (or wild duck) (2013)<ref>{{cite journal | vauthors = Huang Y, Li Y, Burt DW, Chen H, Zhang Y, Qian W, Kim H, Gan S, Zhao Y, Li J, Yi K, Feng H, Zhu P, Li B, Liu Q, Fairley S, Magor KE, Du Z, Hu X, Goodman L, Tafer H, Vignal A, Lee T, Kim KW, Sheng Z, An Y, Searle S, Herrero J, Groenen MA, Crooijmans RP, Faraut T, Cai Q, Webster RG, Aldridge JR, Warren WC, Bartschat S, Kehr S, Marz M, Stadler PF, Smith J, Kraus RH, Zhao Y, Ren L, Fei J, Morisson M, Kaiser P, Griffin DK, Rao M, Pitel F, Wang J, Li N | display-authors = 6 | title = The duck genome and transcriptome provide insight into an avian influenza virus reservoir species | journal = Nature Genetics | volume = 45 | issue = 7 | pages = 776–783 | date = July 2013 | pmid = 23749191 | pmc = 4003391 | doi = 10.1038/ng.2657 }}</ref>
* Order [[Apodiformes]]
** ''[[Chaetura pelagica]]'', [[chimney swift]] (2014)<ref name="Jarvis2014"/>
* Order [[Kiwi (bird)|Apterygiformes]]
**''[[North Island brown kiwi|Apteryx mantelli]],'' North Island brown kiwi (2015)<ref>{{cite journal | vauthors = Le Duc D, Renaud G, Krishnan A, Almén MS, Huynen L, Prohaska SJ, Ongyerth M, Bitarello BD, Schiöth HB, Hofreiter M, Stadler PF, Prüfer K, Lambert D, Kelso J, Schöneberg T | display-authors = 6 | title = Kiwi genome provides insights into evolution of a nocturnal lifestyle | journal = Genome Biology | volume = 16 | issue = 1 | pages = 147 | date = July 2015 | pmid = 26201466 | pmc = 4511969 | doi = 10.1186/s13059-015-0711-4 }}</ref>
* Order [[Bucerotiformes]]
** ''[[Buceros rhinoceros]] silvestris'', [[rhinoceros hornbill]] (2014)<ref name="Jarvis2014" />
* Order [[Caprimulgiformes]]
** ''[[Antrostomus carolinensis]]'', [[chuck-will's-widow]] (2014)<ref name="Jarvis2014" />
* Order [[Cariamiformes]]
** ''[[Cariama cristata]]'', [[red-legged seriema]] (2014)<ref name="Jarvis2014" />
* Order [[Cathartiformes]]
** ''[[Cathartes aura]]'', [[turkey vulture]] (2014)<ref name="Jarvis2014" />
* Order [[Charadriiformes]]
** ''[[Charadrius vociferus]]'', [[killdeer]] (2014)<ref name="Jarvis2014" /><ref name=":2">{{cite journal | vauthors = Galla SJ, Forsdick NJ, Brown L, Hoeppner MP, Knapp M, Maloney RF, Moraga R, Santure AW, Steeves TE | display-authors = 6 | title = Reference Genomes from Distantly Related Species Can Be Used for Discovery of Single Nucleotide Polymorphisms to Inform Conservation Management | journal = Genes | volume = 10 | issue = 1 | pages = 9 | date = December 2018 | pmid = 30583569 | pmc = 6356778 | doi = 10.3390/genes10010009 }}</ref>
** [[Black stilt|''Himantopus novaezelandiae'', kakī/black stilt]] (2019)<ref name=":2" />
** [[Pied stilt|''Himantopus himantopus'', pied stilt]] (2019)<ref name=":2" />
** [[Pied avocet|''Recurvirostra avosetta'', pied avocet]] (2019)<ref name=":2" />
* Order [[Ciconiiformes]]
** ''[[Nipponia nippon]]'', [[crested ibis]] (2014)<ref>{{cite journal | vauthors = Li S, Li B, Cheng C, Xiong Z, Liu Q, Lai J, Carey HV, Zhang Q, Zheng H, Wei S, Zhang H, Chang L, Liu S, Zhang S, Yu B, Zeng X, Hou Y, Nie W, Guo Y, Chen T, Han J, Wang J, Wang J, Chen C, Liu J, Stambrook PJ, Xu M, Zhang G, Gilbert MT, Yang H, Jarvis ED, Yu J, Yan J | display-authors = 6 | title = Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species | journal = Genome Biology | volume = 15 | issue = 12 | pages = 557 | date = 2014-12-11 | pmid = 25496777 | pmc = 4290368 | doi = 10.1186/s13059-014-0557-1 }}</ref>
* Order [[Coliiformes]]
** ''[[Colius striatus]]'', [[speckled mousebird]] (2014)<ref name="Jarvis2014" />
* Order [[Columbiformes]]
** ''[[Columba livia]]'', [[pigeon]] (2014<ref name="Jarvis2014"/>)
* Order [[Coraciiformes]]
** ''[[Merops nubicus]]'', [[carmine bee-eater]] (2014<ref name="Jarvis2014"/>)
* Order [[Cuculiformes]]
** ''[[Cuculus canorus]]'', [[common cuckoo]] (2014<ref name="Jarvis2014"/>)
** ''[[Tauraco erythrolophus]]'', [[red-crested turaco]] (2014<ref name="Jarvis2014"/>)
* Order [[Eurypygiformes]]
** ''[[Eurypyga helias]]'', [[sunbittern]] (2014<ref name="Jarvis2014"/>)
* Order [[Falconiformes]]
** ''[[Falco cherrug]]'', [[saker falcon]] (2013<ref name="Zhan2013">{{cite journal | vauthors = Zhan X, Pan S, Wang J, Dixon A, He J, Muller MG, Ni P, Hu L, Liu Y, Hou H, Chen Y, Xia J, Luo Q, Xu P, Chen Y, Liao S, Cao C, Gao S, Wang Z, Yue Z, Li G, Yin Y, Fox NC, Wang J, Bruford MW | s2cid = 10858993 | display-authors = 6 | title = Peregrine and saker falcon genome sequences provide insights into evolution of a predatory lifestyle | journal = Nature Genetics | volume = 45 | issue = 5 | pages = 563–6 | date = May 2013 | pmid = 23525076 | doi = 10.1038/ng.2588 }}</ref>)
** ''[[Falco peregrinus]]'', [[peregrine falcon]] (2013<ref name="Zhan2013"/>)
* Order [[Galliformes]]
**''[[Sichuan partridge|Arborophila rufipectus]]'', [[Sichuan partridge|Sichuan Partridge]] (2019<ref>{{cite journal | vauthors = Zhou C, Tu H, Yu H, Zheng S, Dai B, Price M, Wu Y, Yang N, Yue B, Meng Y | display-authors = 6 | title = The Draft Genome of the Endangered Sichuan Partridge (<i>Arborophila rufipectus</i>) with Evolutionary Implications | journal = Genes | volume = 10 | issue = 9 | page = 677 | date = September 2019 | pmid = 31491910 | pmc = 6770966 | doi = 10.3390/genes10090677 }}</ref>)
**''[[Gallus gallus]]'', [[chicken]] (2004<ref>{{cite journal | author = International Chicken Genome Sequencing Consortium. | s2cid = 4405203 | title = Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution | journal = Nature | volume = 432 | issue = 7018 | pages = 695–716 | date = December 2004 | pmid = 15592404 | doi = 10.1038/nature03154 | bibcode = 2004Natur.432..695C | url = http://www.escholarship.org/uc/item/44v0c3r5 }}</ref>)
**''[[Meleagris gallopavo]]'', [[domesticated turkey]] (2011<ref name="Dalloul2010">{{cite journal | vauthors = Dalloul RA, Long JA, Zimin AV, Aslam L, Beal K, Blomberg L, Bouffard P, Burt DW, Crasta O, Crooijmans RP, Cooper K, Coulombe RA, De S, Delany ME, Dodgson JB, Dong JJ, Evans C, Frederickson KM, Flicek P, Florea L, Folkerts O, Groenen MA, Harkins TT, Herrero J, Hoffmann S, Megens HJ, Jiang A, de Jong P, Kaiser P, Kim H, Kim KW, Kim S, Langenberger D, Lee MK, Lee T, Mane S, Marcais G, Marz M, McElroy AP, Modise T, Nefedov M, Notredame C, Paton IR, Payne WS, Pertea G, Prickett D, Puiu D, Qioa D, Raineri E, Ruffier M, Salzberg SL, Schatz MC, Scheuring C, Schmidt CJ, Schroeder S, Searle SM, Smith EJ, Smith J, Sonstegard TS, Stadler PF, Tafer H, Tu ZJ, Van Tassell CP, Vilella AJ, Williams KP, Yorke JA, Zhang L, Zhang HB, Zhang X, Zhang Y, Reed KM | display-authors = 6 | title = Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis | journal = PLOS Biology | volume = 8 | issue = 9 | pages = e10000475 | date = September 2010 | pmid = 20838655 | pmc = 2935454 | doi = 10.1371/journal.pbio.1000475 }}</ref>)
** ''[[Helmeted guineafowl|Numida meleagris]]'', [[Helmeted guineafowl|helmeted guinea fowl]] (2019<ref>{{cite journal | vauthors = Vignal A, Boitard S, Thébault N, Dayo GK, Yapi-Gnaore V, Youssao Abdou Karim I, Berthouly-Salazar C, Pálinkás-Bodzsár N, Guémené D, Thibaud-Nissen F, Warren WC, Tixier-Boichard M, Rognon X | display-authors = 6 | title = A guinea fowl genome assembly provides new evidence on evolution following domestication and selection in galliformes | journal = Molecular Ecology Resources | volume = 19 | issue = 4 | pages = 997–1014 | date = July 2019 | pmid = 30945415 | pmc = 6579635 | doi = 10.1111/1755-0998.13017 }}</ref>)
** ''[[Pavo cristatus]]'', [[Indian peafowl]] (2018<ref name="Jaiswal2018">{{cite journal | vauthors = Jaiswal SK, Gupta A, Saxena R |s2cid=196632443 |title=Genome Sequence of Indian Peacock Reveals the Peculiar Case of a Glittering Bird |journal=[[bioRxiv]] | date=5 May 2018 |doi=10.1101/315457 }}</ref>)
**[[Common pheasant|''Phasianus colchicus'']], [[Common pheasant|Common Pheasant]] (2019<ref>{{cite journal | vauthors = Liu Y, Liu S, Zhang N, Que P, Liu N, Höglund J, Zhang Z, Wang B | display-authors = 6 | title = Genome Assembly of the Common Pheasant Phasianus colchicus: A Model for Speciation and Ecological Genomics | journal = Genome Biology and Evolution | volume = 11 | issue = 12 | pages = 3326–3331 | date = December 2019 | pmid = 31713630 | pmc = 7145668 | doi = 10.1093/gbe/evz249 }}</ref>)
**''[[Mikado pheasant|Syrmaticus mikado]]'', [[mikado pheasant]] (2018<ref>{{cite journal | vauthors = Lee CY, Hsieh PH, Chiang LM, Chattopadhyay A, Li KY, Lee YF, Lu TP, Lai LC, Lin EC, Lee H, Ding ST, Tsai MH, Chen CY, Chuang EY | display-authors = 6 | title = Whole-genome de novo sequencing reveals unique genes that contributed to the adaptive evolution of the Mikado pheasant | journal = GigaScience | volume = 7 | issue = 5 | date = May 2018 | pmid = 29722814 | pmc = 5941149 | doi = 10.1093/gigascience/giy044 }}</ref>)
**''[[Tetrao tetrix]]'', [[black grouse]] (2014<ref name="Wang2014">{{cite journal | vauthors = Wang B, Ekblom R, Bunikis I, Siitari H, Höglund J | title = Whole genome sequencing of the black grouse (Tetrao tetrix): reference guided assembly suggests faster-Z and MHC evolution | journal = BMC Genomics | volume = 15 | pages = 180 | date = March 2014 | pmid = 24602261 | pmc = 4022176 | doi = 10.1186/1471-2164-15-180 }}</ref>)
* Order [[Gaviiformes]]
** ''[[Gavia stellata]]'', [[red-throated loon]] (2014<ref name="Jarvis2014"/>)
* Order [[Gruiformes]]
** ''[[Balearica regulorum gibbericeps]]'', [[grey crowned-crane]] (2014<ref name="Jarvis2014"/>)
** ''[[Chlamydotis macqueenii]]'', [[MacQueen's bustard]] (2014<ref name="Jarvis2014"/>)
* Order [[Leptosomiformes]]
** ''[[Leptosomus discolor]]'', [[cuckoo-roller]] (2014<ref name="Jarvis2014"/>)
* Order [[Mesitornithiformes]]
** ''[[Mesitornis unicolor]]'', [[brown mesite]] (2014<ref name="Jarvis2014"/>)
* Order [[Opisthocomiformes]]
** ''[[Opisthocomus hoazin]]'', [[hoatzin]] (2014<ref name="Jarvis2014"/>)
* Order [[Passeriformes]]
** ''[[Acanthisitta chloris]]'', [[Rifleman (bird)|rifleman]] (2014)<ref name="Jarvis2014">{{cite journal | vauthors = Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldón T, Capella-Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford MW, Zhan X, Dixon A, Li S, Li N, Huang Y, Derryberry EP, Bertelsen MF, Sheldon FH, Brumfield RT, Mello CV, Lovell PV, Wirthlin M, Schneider MP, Prosdocimi F, Samaniego JA, Vargas Velazquez AM, Alfaro-Núñez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert DM, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong Z, Zeng Y, Liu S, Li Z, Liu B, Wu K, Xiao J, Yinqi X, Zheng Q, Zhang Y, Yang H, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker FK, Jønsson KA, Johnson W, Koepfli KP, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren H, Alström P, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G | display-authors = 6 | title = Whole-genome analyses resolve early branches in the tree of life of modern birds | journal = Science | volume = 346 | issue = 6215 | pages = 1320–31 | date = December 2014 | pmid = 25504713 | pmc = 4405904 | doi = 10.1126/science.1253451 | bibcode = 2014Sci...346.1320J }}</ref>
** ''[[Corvus brachyrhynchos]]'', [[American crow]] (2014<ref name="Jarvis2014"/>)
** ''[[Hawaiian crow|Corvus hawaiiensis]]'', [[Hawaiian crow]] (2018<ref>{{cite journal | vauthors = Sutton JT, Helmkampf M, Steiner CC, Bellinger MR, Korlach J, Hall R, Baybayan P, Muehling J, Gu J, Kingan S, Masuda BM, Ryder OA | display-authors = 6 | title = A High-Quality, Long-Read De Novo Genome Assembly to Aid Conservation of Hawaii's Last Remaining Crow Species | journal = Genes | volume = 9 | issue = 8 | pages = 393 | date = August 2018 | pmid = 30071683 | pmc = 6115840 | doi = 10.3390/genes9080393 }}</ref>)
** ''[[Eastern yellow robin|Eopsaltria australis]]'', Eastern yellow robin (2019)<ref>{{cite journal | vauthors = Gan HM, Falk S, Morales HE, Austin CM, Sunnucks P, Pavlova A | title = Genomic evidence of neo-sex chromosomes in the eastern yellow robin | journal = GigaScience | volume = 8 | issue = 9 | date = September 2019 | pmid = 31494668 | pmc = 6736294 | doi = 10.1093/gigascience/giz111 }}</ref>
** ''[[Ficedula albicollis]]'', [[collared flycatcher]] (2012<ref name="Ellegren2012">{{cite journal | vauthors = Ellegren H, Smeds L, Burri R, Olason PI, Backström N, Kawakami T, Künstner A, Mäkinen H, Nadachowska-Brzyska K, Qvarnström A, Uebbing S, Wolf JB | s2cid = 4414084 | display-authors = 6 | title = The genomic landscape of species divergence in Ficedula flycatchers | journal = Nature | volume = 491 | issue = 7426 | pages = 756–60 | date = November 2012 | pmid = 23103876 | doi = 10.1038/nature11584 | bibcode = 2012Natur.491..756E }}</ref>)
** ''[[Ficedula hypoleuca]]'', [[European pied flycatcher|pied flycatcher]] (2012<ref name="Ellegren2012"/>)
** ''[[Geospiza fortis]]'', [[medium ground-finch]] (2014<ref name="Jarvis2014"/>)
** ''[[Barn swallow|Hirundo rustica]]'', [[barn swallow]] (2018<ref>{{cite journal | vauthors = Formenti G, Chiara M, Poveda L, Francoijs KJ, Bonisoli-Alquati A, Canova L, Gianfranceschi L, Horner DS, Saino N | display-authors = 6 | title = SMRT long reads and Direct Label and Stain optical maps allow the generation of a high-quality genome assembly for the European barn swallow (Hirundo rustica rustica) | journal = GigaScience | volume = 8 | issue = 1 | date = January 2019 | pmid = 30496513 | pmc = 6324554 | doi = 10.1093/gigascience/giy142 }}</ref>)
** ''[[Society finch|Lonchura striata domestica]]'', [[Society finch]] (2018<ref>{{cite journal | vauthors = Colquitt BM, Mets DG, Brainard MS | title = Draft genome assembly of the Bengalese finch, Lonchura striata domestica, a model for motor skill variability and learning | journal = GigaScience | volume = 7 | issue = 3 | pages = 1–6 | date = March 2018 | pmid = 29618046 | pmc = 5861438 | doi = 10.1093/gigascience/giy008 }}</ref>)
** ''[[Manacus vitellinus]]'', [[golden-collared manakin]] (2014<ref name="Jarvis2014"/>)
** ''[[Paradise-crow|Lycocorax pyrrhopterus]]'', [[Paradise-crow]] (2019<ref>{{Cite book|chapter-url=http://gigadb.org/dataset/102158|title=GigaDB Dataset - Genome data of the bird of paradise, Lycocorax pyrrhopterus|website=gigadb.org|access-date=2019-06-14 | doi = 10.5524/102158 |year=2019| vauthors = Prost S, Armstrong EE, Nylander J, Thomas GW, Suh A, Petersen B, Dalen L, Benz BW, Blom MP, Palkopoulou E, Ericson PG | display-authors = 6 |publisher=GigaScience Database|chapter=Genomic}}</ref><ref name="Prost_2019">{{cite journal | vauthors = Prost S, Armstrong EE, Nylander J, Thomas GW, Suh A, Petersen B, Dalen L, Benz BW, Blom MP, Palkopoulou E, Ericson PG, Irestedt M | display-authors = 6 | title = Comparative analyses identify genomic features potentially involved in the evolution of birds-of-paradise | journal = GigaScience | volume = 8 | issue = 5 | date = May 2019 | pmid = 30689847 | pmc = 6497032 | doi = 10.1093/gigascience/giz003 }}</ref>)
** ''[[Manacus vitellinus]]'', [[golden-collared manakin]] (2014<ref name="Jarvis2014"/>)
**''[[Stitchbird|Notiomystis cincta]]'', stichbird or hihi (2019<ref>{{cite journal | vauthors = de Villemereuil P, Rutschmann A, Lee KD, Ewen JG, Brekke P, Santure AW | title = Little Adaptive Potential in a Threatened Passerine Bird | journal = Current Biology | volume = 29 | issue = 5 | pages = 889–894.e3 | date = March 2019 | pmid = 30799244 | doi = 10.1016/j.cub.2019.01.072 | s2cid = 72334429 }}</ref>)
** ''[[Red bird-of-paradise|Paradisaea rubra]]'', [[red bird-of-paradise]] (2019<ref name="Prost_2019" />)
** ''[[King of Saxony bird-of-paradise|Pteridophora albert]]<nowiki/>i'', [[King of Saxony bird-of-paradise|king of saxony bird-of-paradise]] (2019<ref name="Prost_2019" />)
** ''[[Paradise riflebird|Ptiloris paradiseus]]'', [[paradise riflebird]] (2019<ref>{{Cite book|title=Genome data of the bird of paradise, Ptiloris paradiseus|doi=10.5524/102159|year=2019 | vauthors = Prost S, Armstrong EE, Nylander J, Thomas GW, Suh A, Petersen B, Dalen L, Benz BW, Blom MP, Palkopoulou E, Ericson PG, Irestedt M | display-authors = 6 |publisher=GigaScience Database|chapter=Genomic}}</ref><ref name="Prost_2019" />)
** ''[[Taeniopygia guttata]]'', [[zebra finch]] (2010<ref>{{cite journal | vauthors = Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Künstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Lin YC, George J, Sweedler J, Southey B, Gunaratne P, Watson M, Nam K, Backström N, Smeds L, Nabholz B, Itoh Y, Whitney O, Pfenning AR, Howard J, Völker M, Skinner BM, Griffin DK, Ye L, McLaren WM, Flicek P, Quesada V, Velasco G, Lopez-Otin C, Puente XS, Olender T, Lancet D, Smit AF, Hubley R, Konkel MK, Walker JA, Batzer MA, Gu W, Pollock DD, Chen L, Cheng Z, Eichler EE, Stapley J, Slate J, Ekblom R, Birkhead T, Burke T, Burt D, Scharff C, Adam I, Richard H, Sultan M, Soldatov A, Lehrach H, Edwards SV, Yang SP, Li X, Graves T, Fulton L, Nelson J, Chinwalla A, Hou S, Mardis ER, Wilson RK | display-authors = 6 | title = The genome of a songbird | journal = Nature | volume = 464 | issue = 7289 | pages = 757–62 | date = April 2010 | pmid = 20360741 | pmc = 3187626 | doi = 10.1038/nature08819 | bibcode = 2010Natur.464..757W }}</ref>)
* Order [[Pelecaniformes]]
** ''[[Egretta garzetta]]'', [[little egret]] (2014<ref name="Jarvis2014"/>)
** ''[[Pelecanus crispus]]'', [[Dalmatian pelican]] (2014<ref name="Jarvis2014"/>)
* Order [[Phaethontiformes]]
** ''[[Phaethon lepturus]]'', [[white-tailed tropicbird]] (2014<ref name="Jarvis2014"/>)
* Order [[Phoenicopteriformes]]
** ''[[Phoenicopterus ruber]] ruber'', [[American flamingo]] (2014<ref name="Jarvis2014"/>)
* Order [[Piciformes]]
** ''[[Picoides pubescens]]'', [[downy woodpecker]] (2014<ref name="Jarvis2014"/>)
* Order [[Podicipediformes]]
** ''[[Podiceps cristatus]]'', [[great crested grebe]] (2014<ref name="Jarvis2014"/>)
* Order [[Procellariiformes]]
** ''[[Fulmarus glacialis]]'', [[northern fulmar]] (2014<ref name="Jarvis2014"/>)
* Order [[Pterocliformes]]
** ''[[Pterocles gutturalis]]'', [[yellow-throated sandgrouse]] (2014<ref name="Jarvis2014"/>)
* Order [[Psittaciformes]]
** ''[[Cuban amazon|Amazona leucocephala]]'', [[Cuban amazon]] (2019<ref name=":9">{{cite journal | vauthors = Kolchanova S, Kliver S, Komissarov A, Dobrinin P, Tamazian G, Grigorev K, Wolfsberger WW, Majeske AJ, Velez-Valentin J, Valentin de la Rosa R, Paul-Murphy JR, Guzman DS, Court MH, Rodriguez-Flores JL, Martínez-Cruzado JC, Oleksyk TK | display-authors = 6 | title = Genomes of Three Closely Related Caribbean Amazons Provide Insight for Species History and Conservation | journal = Genes | volume = 10 | issue = 1 | pages = 54 | date = January 2019 | pmid = 30654561 | pmc = 6356210 | doi = 10.3390/genes10010054 }}</ref>)
** ''[[Hispaniolan amazon|Amazona ventralis]]'', [[Hispaniolan amazon]] (2019<ref name=":9" />)
** ''[[Puerto Rican amazon|Amazona vittata]]'', [[Puerto Rican amazon|Puerto Rican parrot]] (2012<ref>{{cite journal | vauthors = Oleksyk TK, Pombert JF, Siu D, Mazo-Vargas A, Ramos B, Guiblet W, Afanador Y, Ruiz-Rodriguez CT, Nickerson ML, Logue DM, Dean M, Figueroa L, Valentin R, Martinez-Cruzado JC | display-authors = 6 | title = A locally funded Puerto Rican parrot (Amazona vittata) genome sequencing project increases avian data and advances young researcher education | journal = GigaScience | volume = 1 | issue = 1 | pages = 14 | date = September 2012 | pmid = 23587420 | pmc = 3626513 | doi = 10.1186/2047-217X-1-14 }}</ref>)
** ''[[Scarlet macaw|Ara macao]]'', [[Scarlet macaw]] (2013<ref>{{cite journal | vauthors = Seabury CM, Dowd SE, Seabury PM, Raudsepp T, Brightsmith DJ, Liboriussen P, Halley Y, Fisher CA, Owens E, Viswanathan G, Tizard IR | display-authors = 6 | title = A multi-platform draft de novo genome assembly and comparative analysis for the Scarlet Macaw (Ara macao) | journal = PLOS ONE | volume = 8 | issue = 5 | pages = e62415 | date = 2013-05-08 | pmid = 23667475 | pmc = 3648530 | doi = 10.1371/journal.pone.0062415 | bibcode = 2013PLoSO...862415S }}</ref>)
** [[Malherbe's parakeet|''Cyanoramphus malherbi'', kākāriki karaka]] (2020<ref>{{cite journal | vauthors = Galla SJ, Moraga R, Brown L, Cleland S, Hoeppner MP, Maloney RF, Richardson A, Slater L, Santure AW, Steeves TE | display-authors = 6 | title = A comparison of pedigree, genetic and genomic estimates of relatedness for informing pairing decisions in two critically endangered birds: Implications for conservation breeding programmes worldwide | journal = Evolutionary Applications | volume = 13 | issue = 5 | pages = 991–1008 | date = May 2020 | pmid = 32431748 | pmc = 7232769 | doi = 10.1111/eva.12916 }}</ref>)
** ''[[Melopsittacus undulatus]]'', [[budgerigar]] (2014<ref name="Jarvis2014" />)
** ''[[Nestor notabilis]]'', [[kea]] (2014<ref name="Jarvis2014"/>)
* Order [[Struthioniformes]]
** ''[[Struthio camelus]] australis'', [[common ostrich]] (2014<ref name="Jarvis2014"/>)
* Order [[Sphenisciformes]]
** ''[[Aptenodytes forsteri]]'', [[emperor penguin]] (2014<ref name="Jarvis2014" />)
**''[[King penguin|Aptenodytes patagonicus]]'', king penguin (2019<ref name=":12">{{cite journal | vauthors = Pan H, Cole TL, Bi X, Fang M, Zhou C, Yang Z, Ksepka DT, Hart T, Bouzat JL, Argilla LS, Bertelsen MF, Boersma PD, Bost CA, Cherel Y, Dann P, Fiddaman SR, Howard P, Labuschagne K, Mattern T, Miller G, Parker P, Phillips RA, Quillfeldt P, Ryan PG, Taylor H, Thompson DR, Young MJ, Ellegaard MR, Gilbert MT, Sinding MS, Pacheco G, Shepherd LD, Tennyson AJ, Grosser S, Kay E, Nupen LJ, Ellenberg U, Houston DM, Reeve AH, Johnson K, Masello JF, Stracke T, McKinlay B, Borboroglu PG, Zhang DX, Zhang G | display-authors = 6 | title = High-coverage genomes to elucidate the evolution of penguins | journal = GigaScience | volume = 8 | issue = 9 | date = September 2019 | pmid = 31531675 | doi = 10.1093/gigascience/giz117 | pmc = 6904868 }}</ref><ref>{{Cite book|title= Genomic data from King penguin (Aptenodytes patagonicus). |doi=10.5524/102182 |year=2019 |last1=Alan |first1=D Tennyson J. |last2=Andrew |first2=Reeve Har t|last3=McKinlay | first3 = Bruce |last4=Charles-André |first4=Bost |last5=Chengran |first5=Zhou |last6=Daniel |first6=Ksepka T .|first7=Thompson R | last7 = David |last8=David |first8=Houston M. |last9=De |first9=Zhang Xing |last10=Emily |first10=Kay | last11 = Miller | first11 = Gary |last12=George |first12=Pacheco |last13=Guojie |first13=Zhang |last14=Hailin |first14=Pan |last15=Helen |first15=Taylor | first16 = Bouzat L | last16 = Juan |last17=Juan |first17=Masello F. |last18=Kathryn |first18=Johnson |last19=Kim |first19=Labuschagne |last20=Lara |first20=Shepherd D. |last21=Lisa |first21=Nupen J. | first22=Argilla S | last22 = Lisa |last23=Mads |first23=Bertelsen F. |first24=Ellegaard R | last24 =Martin |last25=Melanie |first25=Young J. |last26=Miaoquan |first26=Fang |last27=Mikkel-Holger |first27=Sinding S. |last28=M.Thomas |first28=Gilbert P. |last29=Boersma | first29 = Dee P |last30=Pablo |first30=García Borboroglu | name-list-style = vanc |display-authors=6 |publisher=GigaScience Database|chapter=Genomic}}</ref>)
**''[[Southern rockhopper penguin|Eudyptes chrysocome]]'', Western rockhopper penguin (2019<ref name=":12" /><ref>{{Cite book|title= Genomic data from Western rockhopper penguin (Eudyptes chrysocome). |doi=10.5524/102170|year=2019 | vauthors = Pan H, Cole T, Couto A, Bi X, Machado AM, Brejova B, etal |publisher=GigaScience Database|chapter=Genomic}}</ref>)
**''[[Macaroni penguin|Eudyptes chrysolophus chrysolophus]]'', Macaroni penguin (2019<ref name=":12" /><ref>{{Cite book|title= Genomic data from Macaroni penguin (Eudyptes chrysolophus chrysolophus). | doi=10.5524/102165|year=2019| vauthors = Pan H, Cole T, Couto A, Bi X, Machado AM, Brejova B, etal |publisher=GigaScience Database|chapter=Genomic}}</ref>)
**''[[Royal penguin|Eudyptes chrysolophus schlegeli]]'', Royal penguin (2019<ref name=":12" /><ref>{{Cite book|title= Genomic data from Royal penguin (Eudyptes chrysolophus schlegeli). | doi=10.5524/102164|year=2019|last1=Alan|first1=D Tennyson J.|last2=Andrew|first2=Reeve Hart| last3 = McKinlay | first3 = Bruce |last4=Charles-André|first4=Bost|last5=Chengran|first5=Zhou|last6=Daniel|first6=Ksepka T.|author7=Thompson R David|last8=David|first8=Houston M.|last9=De|first9=Zhang Xing|last10=Emily|first10=Kay| last11 = Miller | first11 = Gary | last12=George|first12=Pacheco|last13=Guojie|first13=Zhang|last14=Hailin|first14=Pan|last15=Helen|first15=Taylor| first16 = Bouzat L | last16 = Juan |last17=Juan|first17=Masello F.|last18=Kathryn|first18=Johnson|last19=Kim|first19=Labuschagne|last20=Lara|first20=Shepherd D.|last21=Lisa|first21=Nupen J.| last22 = Argilla | first22 = S Lisa |last23=Mads|first23=Bertelsen F.| last24 = Ellegaard | first24 = R Martin |last25=Melanie|first25=Young J.|last26=Miaoquan|first26=Fang|last27=Mikkel-Holger|first27=Sinding S.|last28=M.Thomas|first28=Gilbert P.| last29 = Boersma | first29 = Dee P |last30=Pablo|first30=García Borboroglu| name-list-style = vanc |display-authors=6|publisher=GigaScience Database|chapter=Genomic}}</ref>)
**''[[Eastern rockhopper penguin|Eudyptes filholi]]'', Eastern rockhopper penguin (2019<ref name=":12" /><ref>{{Cite book|title= Genomic data from Eastern rockhopper penguin (Eudyptes filholi). | doi=10.5524/102169|year=2019| vauthors = Pan H, Cole T, Couto A, Bi X, Machado AM, Brejova B, etal|publisher=GigaScience Database|chapter=Genomic}}</ref>)
**''[[Northern rockhopper penguin|Eudyptes moseleyi]]'', Northern rockhopper penguin (2019<ref name=":12" /><ref>{{Cite book|title= Genomic data from Northern rockhopper penguin (Eudyptes moseleyi). | doi=10.5524/102171|year=2019| vauthors = Pan H, Cole T, Couto A, Bi X, Machado AM, Brejova B, etal|publisher=GigaScience Database|chapter=Genomic}}</ref>)
**''[[Fiordland penguin|Eudyptes pachyrhynchus]]'', Fiordland-crested penguin (2019<ref name=":12" /><ref>{{Cite book|title= Genomic data from Fiordland-crested penguin (Eudyptes pachyrhynchus). | doi=10.5524/102166|year=2019| vauthors = Pan H, Cole T, Couto A, Bi X, Machado AM, Brejova B, etal|publisher=GigaScience Database|chapter=Genomic}}</ref>)
**''[[Snares penguin|Eudyptes robustus]]'', Snares-crested penguin (2019<ref name=":12" /><ref>{{Cite book|title= Genomic data from Snares-crested penguin (Eudyptes robustus). | doi=10.5524/102167|year=2019| vauthors = Pan H, Cole T, Couto A, Bi X, Machado AM, Brejova B, etal|publisher=GigaScience Database|chapter=Genomic}}</ref>)
**''[[Erect-crested penguin|Eudyptes sclateri]]'', Erect-crested penguin (2019<ref name=":12" /><ref>{{Cite book|title= Genomic data from Erect-crested penguin (Eudyptes sclateri). | doi=10.5524/102168|year=2019| vauthors = Pan H, Cole T, Couto A, Bi X, Machado AM, Brejova B, etal|publisher=GigaScience Database|chapter=Genomic}}</ref>)
**''[[White-flippered penguin|Eudyptula minor albosignata]]'', white-flippered penguin (2019<ref name=":12" /><ref>{{Cite book|title= Genomic data from White-flippered penguin (Eudyptula minor albosignata). | doi=10.5524/102177|year=2019| vauthors = Pan H, Cole T, Couto A, Bi X, Machado AM, Brejova B, etal|publisher=GigaScience Database|chapter=Genomic}}</ref>)
**''[[Little penguin|Eudyptula minor minor]]'', little blue penguin (2019<ref name=":12" /><ref>{{Cite book|title= Genomic data from Little blue penguin (Eudyptula minor minor). | doi=10.5524/102178|year=2019| vauthors = Pan H, Cole T, Couto A, Bi X, Machado AM, Brejova B, etal|publisher=GigaScience Database|chapter=Genomic}}</ref>)
**''[[Little penguin|Eudyptula novaehollandiae]]'', fairy penguin (2019<ref name=":12" /><ref>{{Cite book|title= Genomic data from Fairy penguin (Eudyptula novaehollandiae). | doi=10.5524/102179|year=2019| vauthors = Pan H, Cole T, Couto A, Bi X, Machado AM, Brejova B, etal|publisher=GigaScience Database|chapter=Genomic}}</ref>)
**''[[Yellow-eyed penguin|Megadyptes antipodes antipodes]]'', yellow eyed penguin or hoiho (2019<ref name=":12" /><ref>{{Cite book|title= Genomic data from Yellow-eyed penguin (Megadyptes antipodes antipodes). | doi=10.5524/102172|year=2019| vauthors = Pan H, Cole T, Couto A, Bi X, Machado AM, Brejova B, etal|publisher=GigaScience Database|chapter=Genomic}}</ref>)
**''[[Pygoscelis adeliae]]'', [[Adélie penguin]] (2014<ref name="Jarvis2014"/>)
**''[[Chinstrap penguin|Pygoscelis antarctica]]'', chinstrap penguin (2019<ref name=":12" /><ref>{{Cite book|title= Genomic data from Chinstrap penguin (Pygoscelis antarctica). | doi=10.5524/102181|year=2019| vauthors = Pan H, Cole T, Couto A, Bi X, Machado AM, Brejova B, etal|publisher=GigaScience Database|chapter=Genomic}}</ref>)
**''[[Gentoo penguin|Pygoscelis papua]]'', gentoo penguin (2019<ref name=":12" /><ref>{{Cite book|title= Genomic data from Gentoo penguin (Pygoscelis papua). | doi=10.5524/102180|year=2019| vauthors = Pan H, Cole T, Couto A, Bi X, Machado AM, Brejova B, etal|publisher=GigaScience Database|chapter=Genomic}}</ref>)
**''[[African penguin|Spheniscus demersus]]'', African penguin (2019<ref name=":12" />)
**''[[Humboldt penguin|Spheniscus humboldti]]'', Humboldt penguin (2019<ref name=":12" /><ref>{{Cite book|title= Genomic data from Humboldt penguin (Spheniscus humboldti). | doi=10.5524/102176|year=2019| vauthors = Pan H, Cole T, Couto A, Bi X, Machado AM, Brejova B, etal|publisher=GigaScience Database|chapter=Genomic}}</ref>)
**''[[Magellanic penguin|Spheniscus magellanicus]]'', Magellanic penguin (2019<ref name=":12" /><ref>{{Cite book|title= Genomic data from Magellanic penguin (Spheniscus magellanicus). | doi=10.5524/102173|year=2019| vauthors = Pan H, Cole T, Couto A, Bi X, Machado AM, Brejova B, etal|publisher=GigaScience Database|chapter=Genomic}}</ref>)
**''[[Galapagos penguin|Spheniscus mendiculus]]'', Galápagos penguin (2019<ref name=":12" /><ref>{{Cite book|title= Genomic data from Galápagos penguin (Spheniscus mendiculus). | doi=10.5524/102175|year=2019| vauthors = Pan H, Cole T, Couto A, Bi X, Machado AM, Brejova B, etal|publisher=GigaScience Database|chapter=Genomic}}</ref>)
* Order [[Strigiformes]]
** ''[[Tyto alba]]'', [[barn owl]] (2014<ref name="Jarvis2014"/>)
** ''[[Strix occidentalis caurina]]'', [[northern spotted owl]] (2017<ref name="Hanna2017">{{cite journal | vauthors = Hanna ZR, Henderson JB, Wall JD, Emerling CA, Fuchs J, Runckel C, Mindell DP, Bowie RC, DeRisi JL, Dumbacher JP | display-authors = 6 | title = Northern Spotted Owl (Strix occidentalis caurina) Genome: Divergence with the Barred Owl (Strix varia) and Characterization of Light-Associated Genes | journal = Genome Biology and Evolution | volume = 9 | issue = 10 | pages = 2522–2545 | date = October 2017 | pmid = 28992302 | pmc = 5629816 | doi = 10.1093/gbe/evx158 }}</ref>)
** ''[[Strix varia]]'', [[Barred owl]] (2017<ref name="Hanna2017"/>)
* Order [[Suliformes]]
** ''[[Phalacrocorax auritus]]'', [[double-crested cormorant]] (2017<ref name="Burga2017">{{cite journal | vauthors = Burga A, Wang W, Ben-David E, Wolf PC, Ramey AM, Verdugo C, Lyons K, Parker PG, Kruglyak L | title = A genetic signature of the evolution of loss of flight in the Galapagos cormorant | journal = Science | volume = 356 | issue = 6341 | pages = eaal3345 | date = June 2017 | pmid = 28572335 | pmc = 5567675 | doi = 10.1126/science.aal3345 }}</ref>)
** ''[[Phalacrocorax brasilianus]]'', [[Neotropic cormorant]] (2017<ref name="Burga2017"/>)
** ''[[Phalacrocorax carbo]]'', [[great cormorant]] (2014<ref name="Jarvis2014"/>)
** ''[[Phalacrocorax harrisi]]'', [[Galapagos cormorant]] (2017<ref name="Burga2017"/>)
** ''[[Phalacrocorax pelagicus]]'', [[pelagic cormorant]] (2017<ref name="Burga2017"/>)
* Order [[Tinamiformes]]
** ''[[Tinamus guttatus]]'', [[white-throated tinamou]] (2014<ref name="Jarvis2014"/>)
* Order [[Trochiliformes]]
** ''[[Calypte anna]]'', [[Anna's hummingbird]] (2014<ref name="Jarvis2014"/>)
* Order [[Trogoniformes]]
** ''[[Apaloderma vittatum]]'', [[bar-tailed trogon]] (2014<ref name="Jarvis2014"/>)

===Mammals===
===Mammals===
* Subclass [[Prototheria]], Order [[Monotremata]], Family [[Ornithorhynchidae]]
* Subclass [[Prototheria]], Order [[Monotremata]], Family [[Ornithorhynchidae]]
Line 353: Line 10:
**** Family [[Dasyuridae]]
**** Family [[Dasyuridae]]
***** ''[[Brown antechinus|Antechinus stuartii]],'' Brown antechinus (2020<ref>{{Cite journal|last1=Brandies|first1=Parice A.|last2=Tang|first2=Simon|last3=Johnson|first3=Robert S. P.|last4=Hogg|first4=Carolyn J.|last5=Belov|first5=Katherine|title=The first Antechinus reference genome provides a resource for investigating the genetic basis of semelparity and age-related neuropathologies|url=https://gigabytejournal.com/articles/7|access-date=2020-11-17|journal=Gigabyte|year=2020|volume=2020|pages=1–22|language=en|doi=10.46471/gigabyte.7}}</ref>)
***** ''[[Brown antechinus|Antechinus stuartii]],'' Brown antechinus (2020<ref>{{Cite journal|last1=Brandies|first1=Parice A.|last2=Tang|first2=Simon|last3=Johnson|first3=Robert S. P.|last4=Hogg|first4=Carolyn J.|last5=Belov|first5=Katherine|title=The first Antechinus reference genome provides a resource for investigating the genetic basis of semelparity and age-related neuropathologies|url=https://gigabytejournal.com/articles/7|access-date=2020-11-17|journal=Gigabyte|year=2020|volume=2020|pages=1–22|language=en|doi=10.46471/gigabyte.7}}</ref>)
*****''[[Sarcophilus harrisii]]'', [[Tasmanian devil]] (<ref>[http://www.ensembl.org/Sarcophilus_harrisii/Info/Index Ensembl entry]</ref>)
*****''[[Sarcophilus harrisii]]'', Tasmanian devil (<ref>[http://www.ensembl.org/Sarcophilus_harrisii/Info/Index Ensembl entry]</ref>)
*****''[[Sminthopsis crassicaudata]]'', Fat-tailed dunnart (ongoing<ref>[https://ozmammalsgenomics.com/whole-genomes/dunnart-genome/
Fat-tailed dunnart genome]</ref>)
*****''[[Dasyurus hallucatus]]'', Northern quoll (ongoing<ref>[https://ozmammalsgenomics.com/whole-genomes/nquoll-genome/
Northern quoll genome]</ref>)
**** Family [[Myrmecobiidae]]
***** ''[[numbat|Myrmecobius fasciatus]]'', Numbat (ongoing<ref>[https://ozmammalsgenomics.com/whole-genomes/numbat-genome/
Numbat genome]</ref>)
**** Family [[Thylacinidae]]
**** Family [[Thylacinidae]]
***** ''[[Thylacinus cynocephalus]]'', [[thylacine]] (<ref name="pmid29230027">{{cite journal | vauthors = Feigin CY, Newton AH, Doronina L, Schmitz J, Hipsley CA, Mitchell KJ, Gower G, Llamas B, Soubrier J, Heider TN, Menzies BR, Cooper A, O'Neill RJ, Pask AJ | s2cid = 4630578 | display-authors = 6 | title = Genome of the Tasmanian tiger provides insights into the evolution and demography of an extinct marsupial carnivore | journal = Nature Ecology & Evolution | volume = 2 | issue = 1 | pages = 182–192 | date = January 2018 | pmid = 29230027 | doi = 10.1038/s41559-017-0417-y }}</ref>)
***** ''[[Thylacinus cynocephalus]]'', [[thylacine]] (<ref name="pmid29230027">{{cite journal | vauthors = Feigin CY, Newton AH, Doronina L, Schmitz J, Hipsley CA, Mitchell KJ, Gower G, Llamas B, Soubrier J, Heider TN, Menzies BR, Cooper A, O'Neill RJ, Pask AJ | s2cid = 4630578 | display-authors = 6 | title = Genome of the Tasmanian tiger provides insights into the evolution and demography of an extinct marsupial carnivore | journal = Nature Ecology & Evolution | volume = 2 | issue = 1 | pages = 182–192 | date = January 2018 | pmid = 29230027 | doi = 10.1038/s41559-017-0417-y }}</ref>)
*** Order [[Peramelemorphia]]
**** Family [[Peramelidae]]
***** ''[[eastern barred bandicoot|Perameles gunnii]]'', Eastern barred bandicoot (ongoing<ref>[https://ozmammalsgenomics.com/whole-genomes/ebb-genome/ Eastern barred bandicoot genome]</ref>)
**** Family [[Thylacomyidae]]
***** ''[[greater bilby|Macrotis lagotis]]'', Greater bilby (ongoing<ref>[https://ozmammalsgenomics.com/whole-genomes/bilby-genome/ Greater bilby genome]</ref>)
*** Order [[Notoryctemorphia]]
**** Family [[Notoryctidae]]
***** ''[[southern marsupial mole|Notoryctes typhlops]]'', Southern marsupial mole (ongoing<ref>[https://ozmammalsgenomics.com/whole-genomes/marsupial-mole-genome/ Marsupial mole genome]</ref>)
*** Order [[Diprotodontia]]
*** Order [[Diprotodontia]]
**** Family [[Macropodidae]]
**** Family [[Macropodidae]]
Line 558: Line 230:
**#* Family [[Leporidae]]
**#* Family [[Leporidae]]
**#** ''[[Oryctolagus cuniculus]]'', European rabbit (2010<ref name="BroadInst">{{cite web |url=http://www.broad.mit.edu/mammals |title=Mammalian Genome Project |publisher=[[MIT]] |access-date=2012-05-23 |archive-url=https://web.archive.org/web/20090106195801/http://www.broad.mit.edu./mammals |archive-date=2009-01-06 |url-status=dead }}</ref><ref>[http://www.ensembl.org/Oryctolagus_cuniculus/Location/Genome Ensembl entry]</ref>)
**#** ''[[Oryctolagus cuniculus]]'', European rabbit (2010<ref name="BroadInst">{{cite web |url=http://www.broad.mit.edu/mammals |title=Mammalian Genome Project |publisher=[[MIT]] |access-date=2012-05-23 |archive-url=https://web.archive.org/web/20090106195801/http://www.broad.mit.edu./mammals |archive-date=2009-01-06 |url-status=dead }}</ref><ref>[http://www.ensembl.org/Oryctolagus_cuniculus/Location/Genome Ensembl entry]</ref>)

==Protostomia==

===Insects===
* Order [[Blattodea]]
** ''[[Blattella germanica]]'', German cockroach (2018<ref name="Harrison2018">{{cite journal | vauthors = Harrison MC, Jongepier E, Robertson HM, Arning N, Bitard-Feildel T, Chao H, Childers CP, Dinh H, Doddapaneni H, Dugan S, Gowin J, Greiner C, Han Y, Hu H, Hughes DS, Huylmans AK, Kemena C, Kremer LP, Lee SL, Lopez-Ezquerra A, Mallet L, Monroy-Kuhn JM, Moser A, Murali SC, Muzny DM, Otani S, Piulachs MD, Poelchau M, Qu J, Schaub F, Wada-Katsumata A, Worley KC, Xie Q, Ylla G, Poulsen M, Gibbs RA, Schal C, Richards S, Belles X, Korb J, Bornberg-Bauer E | display-authors = 6 | title = Hemimetabolous genomes reveal molecular basis of termite eusociality | journal = Nature Ecology & Evolution | volume = 2 | issue = 3 | pages = 557–566 | date = March 2018 | pmid = 29403074 | pmc = 6482461 | doi = 10.1038/s41559-017-0459-1 }}</ref>)
** ''[[Periplaneta americana]]'', American cockroach (2018<ref>{{cite journal | vauthors = Li S, Zhu S, Jia Q, Yuan D, Ren C, Li K, Liu S, Cui Y, Zhao H, Cao Y, Fang G, Li D, Zhao X, Zhang J, Yue Q, Fan Y, Yu X, Feng Q, Zhan S | display-authors = 6 | title = The genomic and functional landscapes of developmental plasticity in the American cockroach | journal = Nature Communications | volume = 9 | issue = 1 | pages = 1008 | date = March 2018 | pmid = 29559629 | pmc = 5861062 | doi = 10.1038/s41467-018-03281-1 | bibcode = 2018NatCo...9.1008L | doi-access = free }}</ref>)
** ''[[Zootermopsis nevadensis]]'', a dampwood termite (2014<ref>{{cite journal | vauthors = Terrapon N, Li C, Robertson HM, Ji L, Meng X, Booth W, Chen Z, Childers CP, Glastad KM, Gokhale K, Gowin J, Gronenberg W, Hermansen RA, Hu H, Hunt BG, Huylmans AK, Khalil SM, Mitchell RD, Munoz-Torres MC, Mustard JA, Pan H, Reese JT, Scharf ME, Sun F, Vogel H, Xiao J, Yang W, Yang Z, Yang Z, Zhou J, Zhu J, Brent CS, Elsik CG, Goodisman MA, Liberles DA, Roe RM, Vargo EL, Vilcinskas A, Wang J, Bornberg-Bauer E, Korb J, Zhang G, Liebig J | display-authors = 6 | title = Molecular traces of alternative social organization in a termite genome | journal = Nature Communications | volume = 5 | pages = 3636 | date = May 2014 | pmid = 24845553 | doi = 10.1038/ncomms4636 | bibcode = 2014NatCo...5.3636T }}</ref>
** ''[[Cryptotermes secundus]]'', a drywood termite(2018<ref name="Harrison2018"/>)
** ''[[Macrotermes natalensis]]'', a higher termite (2014<ref>{{cite journal | vauthors = Poulsen M, Hu H, Li C, Chen Z, Xu L, Otani S, Nygaard S, Nobre T, Klaubauf S, Schindler PM, Hauser F, Pan H, Yang Z, Sonnenberg AS, de Beer ZW, Zhang Y, Wingfield MJ, Grimmelikhuijzen CJ, de Vries RP, Korb J, Aanen DK, Wang J, Boomsma JJ, Zhang G | display-authors = 6 | title = Complementary symbiont contributions to plant decomposition in a fungus-farming termite | journal = Proceedings of the National Academy of Sciences of the United States of America | volume = 111 | issue = 40 | pages = 14500–5 | date = October 2014 | pmid = 25246537 | pmc = 4209977 | doi = 10.1073/pnas.1319718111 | bibcode = 2014PNAS..11114500P }}</ref>
* Order [[Coleoptera]]
** ''[[Dendroctonus ponderosae]]'' Hopkins, [[beetle]] (mountain pine beetle) (2013<ref>{{cite journal | vauthors = Keeling CI, Yuen MM, Liao NY, Docking TR, Chan SK, Taylor GA, Palmquist DL, Jackman SD, Nguyen A, Li M, Henderson H, Janes JK, Zhao Y, Pandoh P, Moore R, Sperling FA, Huber DP, Birol I, Jones SJ, Bohlmann J | display-authors = 6 | title = Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest | journal = Genome Biology | volume = 14 | issue = 3 | pages = R27 | date = March 2013 | pmid = 23537049 | pmc = 4053930 | doi = 10.1186/gb-2013-14-3-r27 }}</ref>)
** ''Aquatica lateralis'', Japanese aquatic firefly "Heike-botaru" (firefly) (2018<ref name=":11">{{cite journal | vauthors = Fallon TR, Lower SE, Chang CH, Bessho-Uehara M, Martin GJ, Bewick AJ, Behringer M, Debat HJ, Wong I, Day JC, Suvorov A, Silva CJ, Stanger-Hall KF, Hall DW, Schmitz RJ, Nelson DR, Lewis SM, Shigenobu S, Bybee SM, Larracuente AM, Oba Y, Weng JK | display-authors = 6 | title = Firefly genomes illuminate parallel origins of bioluminescence in beetles | journal = eLife | volume = 7 | pages = e36495 | date = October 2018 | pmid = 30324905 | pmc = 6191289 | doi = 10.7554/eLife.36495 | editor-first = Robert | editor2-last = Tautz | editor2-first = Diethard | editor-last = Waterhouse }}</ref>)
** ''Photinus pyralis'', Big Dipper firefly (2018<ref name=":11" />)
** ''Protaetia brevitarsis'', White-spotted flower chafer (2019<ref>{{cite journal | vauthors = Wang K, Li P, Gao Y, Liu C, Wang Q, Yin J, Zhang J, Geng L, Shu C | display-authors = 6 | title = De novo genome assembly of the white-spotted flower chafer (Protaetia brevitarsis) | journal = GigaScience | volume = 8 | issue = 4 | date = April 2019 | pmid = 30949689 | pmc = 6449472 | doi = 10.1093/gigascience/giz019 }}</ref>)
** ''[[Tribolium castaneum]]'' <small>Strain:GA-2</small>, [[beetle]] (red flour beetle) (2008<ref name="The ''Tribolium'' Genome Sequencing Consortium">{{cite journal | vauthors = Richards S, Gibbs RA, Weinstock GM, Brown SJ, Denell R, Beeman RW, Gibbs R, Beeman RW, Brown SJ, Bucher G, Friedrich M, Grimmelikhuijzen CJ, Klingler M, Lorenzen M, Richards S, Roth S, Schröder R, Tautz D, Zdobnov EM, Muzny D, Gibbs RA, Weinstock GM, Attaway T, Bell S, Buhay CJ, Chandrabose MN, Chavez D, Clerk-Blankenburg KP, Cree A, Dao M, Davis C, Chacko J, Dinh H, Dugan-Rocha S, Fowler G, Garner TT, Garnes J, Gnirke A, Hawes A, Hernandez J, Hines S, Holder M, Hume J, Jhangiani SN, Joshi V, Khan ZM, Jackson L, Kovar C, Kowis A, Lee S, Lewis LR, Margolis J, Morgan M, Nazareth LV, Nguyen N, Okwuonu G, Parker D, Richards S, Ruiz SJ, Santibanez J, Savard J, Scherer SE, Schneider B, Sodergren E, Tautz D, Vattahil S, Villasana D, White CS, Wright R, Park Y, Beeman RW, Lord J, Oppert B, Lorenzen M, Brown S, Wang L, Savard J, Tautz D, Richards S, Weinstock G, Gibbs RA, Liu Y, Worley K, Weinstock G, Elsik CG, Reese JT, Elhaik E, Landan G, Graur D, Arensburger P, Atkinson P, Beeman RW, Beidler J, Brown SJ, Demuth JP, Drury DW, Du YZ, Fujiwara H, Lorenzen M, Maselli V, Osanai M, Park Y, Robertson HM, Tu Z, Wang JJ, Wang S, Richards S, Song H, Zhang L, Sodergren E, Werner D, Stanke M, Morgenstern B, Solovyev V, Kosarev P, Brown G, Chen HC, Ermolaeva O, Hlavina W, Kapustin Y, Kiryutin B, Kitts P, Maglott D, Pruitt K, Sapojnikov V, Souvorov A, Mackey AJ, Waterhouse RM, Wyder S, Zdobnov EM, Zdobnov EM, Wyder S, Kriventseva EV, Kadowaki T, Bork P, Aranda M, Bao R, Beermann A, Berns N, Bolognesi R, Bonneton F, Bopp D, Brown SJ, Bucher G, Butts T, Chaumot A, Denell RE, Ferrier DE, Friedrich M, Gordon CM, Jindra M, Klingler M, Lan Q, Lattorff HM, Laudet V, von Levetsow C, Liu Z, Lutz R, Lynch JA, da Fonseca RN, Posnien N, Reuter R, Roth S, Savard J, Schinko JB, Schmitt C, Schoppmeier M, Schröder R, Shippy TD, Simonnet F, Marques-Souza H, Tautz D, Tomoyasu Y, Trauner J, Van der Zee M, Vervoort M, Wittkopp N, Wimmer EA, Yang X, Jones AK, Sattelle DB, Ebert PR, Nelson D, Scott JG, Beeman RW, Muthukrishnan S, Kramer KJ, Arakane Y, Beeman RW, Zhu Q, Hogenkamp D, Dixit R, Oppert B, Jiang H, Zou Z, Marshall J, Elpidina E, Vinokurov K, Oppert C, Zou Z, Evans J, Lu Z, Zhao P, Sumathipala N, Altincicek B, Vilcinskas A, Williams M, Hultmark D, Hetru C, Jiang H, Grimmelikhuijzen CJ, Hauser F, Cazzamali G, Williamson M, Park Y, Li B, Tanaka Y, Predel R, Neupert S, Schachtner J, Verleyen P, Raible F, Bork P, Friedrich M, Walden KK, Robertson HM, Angeli S, Forêt S, Bucher G, Schuetz S, Maleszka R, Wimmer EA, Beeman RW, Lorenzen M, Tomoyasu Y, Miller SC, Grossmann D, Bucher G | s2cid = 4402128 | display-authors = 6 | title = The genome of the model beetle and pest Tribolium castaneum | journal = Nature | volume = 452 | issue = 7190 | pages = 949–55 | date = April 2008 | pmid = 18362917 | doi = 10.1038/nature06784 | bibcode = 2008Natur.452..949R | url = http://edoc.mdc-berlin.de/13604/1/13604oa.pdf }}</ref>)
* Order [[Diptera]]
** Family [[Calliphoridae]]
*** ''[[Calliphora|Aldrichina]] grahami'', Forensic blowfly (2020<ref>{{cite journal | vauthors = Meng F, Liu Z, Han H, Finkelbergs D, Jiang Y, Zhu M, Wang Y, Sun Z, Chen C, Guo Y, Cai J | display-authors = 6 | title = Chromosome-level genome assembly of Aldrichina grahami, a forensically important blowfly | journal = GigaScience | volume = 9 | issue = 3 | date = March 2020 | pmid = 32191812 | pmc = 7081965 | doi = 10.1093/gigascience/giaa020 }}</ref>)
** Family [[Chironomidae]]
*** ''[[Dasypogon diadema]]'', [[Hunting Robber fly]] (2019<ref>{{cite journal | vauthors = Drukewitz SH, Bokelmann L, Undheim EA, von Reumont BM | title = Toxins from scratch? Diverse, multimodal gene origins in the predatory robber fly Dasypogon diadema indicate a dynamic venom evolution in dipteran insects | journal = GigaScience | volume = 8 | issue = 7 | date = July 2019 | pmid = 31289835 | pmc = 6615979 | doi = 10.1093/gigascience/giz081 }}</ref>)
*** ''[[Parochlus steinend]]'', [[Antarctic winged midge]] (2017<ref>{{cite journal | vauthors = Kim S, Oh M, Jung W, Park J, Choi HG, Shin SC | title = Genome sequencing of the winged midge, Parochlus steinenii, from the Antarctic Peninsula | journal = GigaScience | volume = 6 | issue = 3 | pages = 1–8 | date = March 2017 | pmid = 28327954 | pmc = 5467013 | doi = 10.1093/gigascience/giw009 }}</ref>)
*** [[Proctacanthus coquillettii|''Proctacanthus coquillett''i]], [[Asilidae|Assassin fly]] (2017<ref>{{cite journal | vauthors = Dikow RB, Frandsen PB, Turcatel M, Dikow T | title = Proctacanthus coquilletti (Insecta: Diptera: Asilidae) and 16 representative transcriptomes | journal = PeerJ | volume = 5 | pages = e2951 | date = 2017-01-31 | pmid = 28168115 | doi = 10.7717/peerj.2951 | pmc = 5289110 }}</ref>)
** Family [[Culicidae]] (mosquitoes)
*** ''[[Aedes aegypti]]'' <small>Strain:LVPib12</small>, [[mosquito]] ([[Vector (epidemiology)|vector]] of [[dengue fever]], etc.) (2007<ref>{{cite journal | vauthors = Nene V, Wortman JR, Lawson D, Haas B, Kodira C, Tu ZJ, Loftus B, Xi Z, Megy K, Grabherr M, Ren Q, Zdobnov EM, Lobo NF, Campbell KS, Brown SE, Bonaldo MF, Zhu J, Sinkins SP, Hogenkamp DG, Amedeo P, Arensburger P, Atkinson PW, Bidwell S, Biedler J, Birney E, Bruggner RV, Costas J, Coy MR, Crabtree J, Crawford M, Debruyn B, Decaprio D, Eiglmeier K, Eisenstadt E, El-Dorry H, Gelbart WM, Gomes SL, Hammond M, Hannick LI, Hogan JR, Holmes MH, Jaffe D, Johnston JS, Kennedy RC, Koo H, Kravitz S, Kriventseva EV, Kulp D, Labutti K, Lee E, Li S, Lovin DD, Mao C, Mauceli E, Menck CF, Miller JR, Montgomery P, Mori A, Nascimento AL, Naveira HF, Nusbaum C, O'leary S, Orvis J, Pertea M, Quesneville H, Reidenbach KR, Rogers YH, Roth CW, Schneider JR, Schatz M, Shumway M, Stanke M, Stinson EO, Tubio JM, Vanzee JP, Verjovski-Almeida S, Werner D, White O, Wyder S, Zeng Q, Zhao Q, Zhao Y, Hill CA, Raikhel AS, Soares MB, Knudson DL, Lee NH, Galagan J, Salzberg SL, Paulsen IT, Dimopoulos G, Collins FH, Birren B, Fraser-Liggett CM, Severson DW | display-authors = 6 | title = Genome sequence of Aedes aegypti, a major arbovirus vector | journal = Science | volume = 316 | issue = 5832 | pages = 1718–23 | date = June 2007 | pmid = 17510324 | pmc = 2868357 | doi = 10.1126/science.1138878 | bibcode = 2007Sci...316.1718N }}</ref>)
*** ''[[Aedes albopictus]]'' (2015<ref>{{cite journal | vauthors = Chen XG, Jiang X, Gu J, Xu M, Wu Y, Deng Y, Zhang C, Bonizzoni M, Dermauw W, Vontas J, Armbruster P, Huang X, Yang Y, Zhang H, He W, Peng H, Liu Y, Wu K, Chen J, Lirakis M, Topalis P, Van Leeuwen T, Hall AB, Jiang X, Thorpe C, Mueller RL, Sun C, Waterhouse RM, Yan G, Tu ZJ, Fang X, James AA | display-authors = 6 | title = Genome sequence of the Asian Tiger mosquito, Aedes albopictus, reveals insights into its biology, genetics, and evolution | journal = Proceedings of the National Academy of Sciences of the United States of America | volume = 112 | issue = 44 | pages = E5907-15 | date = November 2015 | pmid = 26483478 | pmc = 4640774 | doi = 10.1073/pnas.1516410112 | bibcode = 2015PNAS..112E5907C }}</ref>)
*** ''[[Anopheles darlingi]]''
*** ''[[Anopheles gambiae]]'' <small>Strain: PEST</small>, [[mosquito]] ([[Vector (epidemiology)|vector]] of [[malaria]]) (2002<ref>{{cite journal | vauthors = Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, Nusskern DR, Wincker P, Clark AG, Ribeiro JM, Wides R, Salzberg SL, Loftus B, Yandell M, Majoros WH, Rusch DB, Lai Z, Kraft CL, Abril JF, Anthouard V, Arensburger P, Atkinson PW, Baden H, de Berardinis V, Baldwin D, Benes V, Biedler J, Blass C, Bolanos R, Boscus D, Barnstead M, Cai S, Center A, Chaturverdi K, Christophides GK, Chrystal MA, Clamp M, Cravchik A, Curwen V, Dana A, Delcher A, Dew I, Evans CA, Flanigan M, Grundschober-Freimoser A, Friedli L, Gu Z, Guan P, Guigo R, Hillenmeyer ME, Hladun SL, Hogan JR, Hong YS, Hoover J, Jaillon O, Ke Z, Kodira C, Kokoza E, Koutsos A, Letunic I, Levitsky A, Liang Y, Lin JJ, Lobo NF, Lopez JR, Malek JA, McIntosh TC, Meister S, Miller J, Mobarry C, Mongin E, Murphy SD, O'Brochta DA, Pfannkoch C, Qi R, Regier MA, Remington K, Shao H, Sharakhova MV, Sitter CD, Shetty J, Smith TJ, Strong R, Sun J, Thomasova D, Ton LQ, Topalis P, Tu Z, Unger MF, Walenz B, Wang A, Wang J, Wang M, Wang X, Woodford KJ, Wortman JR, Wu M, Yao A, Zdobnov EM, Zhang H, Zhao Q, Zhao S, Zhu SC, Zhimulev I, Coluzzi M, della Torre A, Roth CW, Louis C, Kalush F, Mural RJ, Myers EW, Adams MD, Smith HO, Broder S, Gardner MJ, Fraser CM, Birney E, Bork P, Brey PT, Venter JC, Weissenbach J, Kafatos FC, Collins FH, Hoffman SL | s2cid = 4512225 | display-authors = 6 | title = The genome sequence of the malaria mosquito Anopheles gambiae | journal = Science | volume = 298 | issue = 5591 | pages = 129–49 | date = October 2002 | pmid = 12364791 | doi = 10.1126/science.1076181 | bibcode = 2002Sci...298..129H }}H</ref>)
*** ''[[Anopheles gambiae]]'' <small>Strain: M</small>, [[mosquito]] ([[Vector (epidemiology)|vector]] of [[malaria]]) (2010<ref name="Lawniczak2010">{{cite journal | vauthors = Lawniczak MK, Emrich SJ, Holloway AK, Regier AP, Olson M, White B, Redmond S, Fulton L, Appelbaum E, Godfrey J, Farmer C, Chinwalla A, Yang SP, Minx P, Nelson J, Kyung K, Walenz BP, Garcia-Hernandez E, Aguiar M, Viswanathan LD, Rogers YH, Strausberg RL, Saski CA, Lawson D, Collins FH, Kafatos FC, Christophides GK, Clifton SW, Kirkness EF, Besansky NJ | display-authors = 6 | title = Widespread divergence between incipient Anopheles gambiae species revealed by whole genome sequences | journal = Science | volume = 330 | issue = 6003 | pages = 512–4 | date = October 2010 | pmid = 20966253 | pmc = 3674514 | doi = 10.1126/science.1195755 | bibcode = 2010Sci...330..512L }}</ref>)
*** ''[[Anopheles gambiae]]'' <small>Strain: S</small>, [[mosquito]] ([[Vector (epidemiology)|vector]] of [[malaria]]) (2010)<ref name="Lawniczak2010" />)
*** ''[[Anopheles sinensis]]'', mosquito (vector of [[Palsmodium vivax|vivax malaria]], [[lymphatic filariasis]] and ''[[Setaria]]'' infections), (2014)<ref>{{cite journal | vauthors = Zhou D, Zhang D, Ding G, Shi L, Hou Q, Ye Y, Xu Y, Zhou H, Xiong C, Li S, Yu J, Hong S, Yu X, Zou P, Chen C, Chang X, Wang W, Lv Y, Sun Y, Ma L, Shen B, Zhu C | display-authors = 6 | title = Genome sequence of Anopheles sinensis provides insight into genetics basis of mosquito competence for malaria parasites | journal = BMC Genomics | volume = 15 | issue = 1 | pages = 42 | date = January 2014 | pmid = 24438588 | pmc = 3901762 | doi = 10.1186/1471-2164-15-42 }}</ref>
*** ''[[Anopheles stephensii]]''
*** ''[[Anopheles arabiensis]]'' (2015<ref name="neafsey2015">{{cite journal | vauthors = Neafsey DE, Waterhouse RM, Abai MR, Aganezov SS, Alekseyev MA, Allen JE, Amon J, Arcà B, Arensburger P, Artemov G, Assour LA, Basseri H, Berlin A, Birren BW, Blandin SA, Brockman AI, Burkot TR, Burt A, Chan CS, Chauve C, Chiu JC, Christensen M, Costantini C, Davidson VL, Deligianni E, Dottorini T, Dritsou V, Gabriel SB, Guelbeogo WM, Hall AB, Han MV, Hlaing T, Hughes DS, Jenkins AM, Jiang X, Jungreis I, Kakani EG, Kamali M, Kemppainen P, Kennedy RC, Kirmitzoglou IK, Koekemoer LL, Laban N, Langridge N, Lawniczak MK, Lirakis M, Lobo NF, Lowy E, MacCallum RM, Mao C, Maslen G, Mbogo C, McCarthy J, Michel K, Mitchell SN, Moore W, Murphy KA, Naumenko AN, Nolan T, Novoa EM, O'Loughlin S, Oringanje C, Oshaghi MA, Pakpour N, Papathanos PA, Peery AN, Povelones M, Prakash A, Price DP, Rajaraman A, Reimer LJ, Rinker DC, Rokas A, Russell TL, Sagnon N, Sharakhova MV, Shea T, Simão FA, Simard F, Slotman MA, Somboon P, Stegniy V, Struchiner CJ, Thomas GW, Tojo M, Topalis P, Tubio JM, Unger MF, Vontas J, Walton C, Wilding CS, Willis JH, Wu YC, Yan G, Zdobnov EM, Zhou X, Catteruccia F, Christophides GK, Collins FH, Cornman RS, Crisanti A, Donnelly MJ, Emrich SJ, Fontaine MC, Gelbart W, Hahn MW, Hansen IA, Howell PI, Kafatos FC, Kellis M, Lawson D, Louis C, Luckhart S, Muskavitch MA, Ribeiro JM, Riehle MA, Sharakhov IV, Tu Z, Zwiebel LJ, Besansky NJ | display-authors = 6 | title = Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes | journal = Science | volume = 347 | issue = 6217 | pages = 1258522 | date = January 2015 | pmid = 25554792 | pmc = 4380271 | doi = 10.1126/science.1258522 }}</ref>)
*** ''[[Anopheles quadriannulatus]]'' (2015)<ref name="neafsey2015" />
*** ''[[Anopheles merus]]'' (2015)<ref name="neafsey2015" />
*** ''[[Anopheles melas]]'' (2015)<ref name="neafsey2015" />
*** ''[[Anopheles christyi]]'' (2015)<ref name="neafsey2015" />
*** ''[[Anopheles epiroticus]]'' (2015)<ref name="neafsey2015" />
*** ''[[Anopheles maculatus]]'' (2015)<ref name="neafsey2015" />
*** ''[[Anopheles culicifacies]]'' (2015)<ref name="neafsey2015" />
*** ''[[Anopheles minimus]]'' (2015)<ref name="neafsey2015" />
*** ''[[Anopheles funestus]]'' (2015)2019<ref name="neafsey2015" /><ref>{{cite journal | vauthors = Ghurye J, Koren S, Small ST, Redmond S, Howell P, Phillippy AM, Besansky NJ | title = A chromosome-scale assembly of the major African malaria vector Anopheles funestus | journal = GigaScience | volume = 8 | issue = 6 | date = June 2019 | pmid = 31157884 | pmc = 6545970 | doi = 10.1093/gigascience/giz063 }}</ref>
*** ''[[Anopheles dirus]]'' (2015)<ref name="neafsey2015" />
*** ''[[Anopheles farauti]]'' (2015)<ref name="neafsey2015" />
*** ''[[Anopheles atroparvus]]'' (2015)<ref name="neafsey2015" />
*** ''[[Anopheles sinensis]]'' (2015)<ref name="neafsey2015" />
*** ''[[Anopheles albimanus]]'' (2015)<ref name="neafsey2015" />
*** ''[[Culex quinquefasciatus]]'', [[mosquito]] ([[Vector (epidemiology)|vector]] of [[West Nile virus]], [[filariasis]] etc.) (2010<ref>{{cite journal | vauthors = Arensburger P, Megy K, Waterhouse RM, Abrudan J, Amedeo P, Antelo B, Bartholomay L, Bidwell S, Caler E, Camara F, Campbell CL, Campbell KS, Casola C, Castro MT, Chandramouliswaran I, Chapman SB, Christley S, Costas J, Eisenstadt E, Feschotte C, Fraser-Liggett C, Guigo R, Haas B, Hammond M, Hansson BS, Hemingway J, Hill SR, Howarth C, Ignell R, Kennedy RC, Kodira CD, Lobo NF, Mao C, Mayhew G, Michel K, Mori A, Liu N, Naveira H, Nene V, Nguyen N, Pearson MD, Pritham EJ, Puiu D, Qi Y, Ranson H, Ribeiro JM, Roberston HM, Severson DW, Shumway M, Stanke M, Strausberg RL, Sun C, Sutton G, Tu ZJ, Tubio JM, Unger MF, Vanlandingham DL, Vilella AJ, White O, White JR, Wondji CS, Wortman J, Zdobnov EM, Birren B, Christensen BM, Collins FH, Cornel A, Dimopoulos G, Hannick LI, Higgs S, Lanzaro GC, Lawson D, Lee NH, Muskavitch MA, Raikhel AS, Atkinson PW | display-authors = 6 | title = Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics | journal = Science | volume = 330 | issue = 6000 | pages = 86–8 | date = October 2010 | pmid = 20929810 | pmc = 3740384 | doi = 10.1126/science.1191864 | bibcode = 2010Sci...330...86A }}</ref>)
** Family [[Drosophilidae]] (fruit flies)
*** ''[[Drosophila albomicans]]'', fruit fly (2012<ref name="pmid22439699">{{cite journal | vauthors = Zhou Q, Zhu HM, Huang QF, Zhao L, Zhang GJ, Roy SW, Vicoso B, Xuan ZL, Ruan J, Zhang Y, Zhao RP, Ye C, Zhang XQ, Wang J, Wang W, Bachtrog D | display-authors = 6 | title = Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans | journal = BMC Genomics | volume = 13 | pages = 109 | date = March 2012 | pmid = 22439699 | pmc = 3353239 | doi = 10.1186/1471-2164-13-109 }}</ref>)
*** ''[[Drosophila ananassae]]'', fruit fly (2007<ref name="D12GC">{{cite journal | vauthors = Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artieri CG, Barbash DA, Barker D, Barsanti P, Batterham P, Batzoglou S, Begun D, Bhutkar A, Blanco E, Bosak SA, Bradley RK, Brand AD, Brent MR, Brooks AN, Brown RH, Butlin RK, Caggese C, Calvi BR, Bernardo de Carvalho A, Caspi A, Castrezana S, Celniker SE, Chang JL, Chapple C, Chatterji S, Chinwalla A, Civetta A, Clifton SW, Comeron JM, Costello JC, Coyne JA, Daub J, David RG, Delcher AL, Delehaunty K, Do CB, Ebling H, Edwards K, Eickbush T, Evans JD, Filipski A, Findeiss S, Freyhult E, Fulton L, Fulton R, Garcia AC, Gardiner A, Garfield DA, Garvin BE, Gibson G, Gilbert D, Gnerre S, Godfrey J, Good R, Gotea V, Gravely B, Greenberg AJ, Griffiths-Jones S, Gross S, Guigo R, Gustafson EA, Haerty W, Hahn MW, Halligan DL, Halpern AL, Halter GM, Han MV, Heger A, Hillier L, Hinrichs AS, Holmes I, Hoskins RA, Hubisz MJ, Hultmark D, Huntley MA, Jaffe DB, Jagadeeshan S, Jeck WR, Johnson J, Jones CD, Jordan WC, Karpen GH, Kataoka E, Keightley PD, Kheradpour P, Kirkness EF, Koerich LB, Kristiansen K, Kudrna D, Kulathinal RJ, Kumar S, Kwok R, Lander E, Langley CH, Lapoint R, Lazzaro BP, Lee SJ, Levesque L, Li R, Lin CF, Lin MF, Lindblad-Toh K, Llopart A, Long M, Low L, Lozovsky E, Lu J, Luo M, Machado CA, Makalowski W, Marzo M, Matsuda M, Matzkin L, McAllister B, McBride CS, McKernan B, McKernan K, Mendez-Lago M, Minx P, Mollenhauer MU, Montooth K, Mount SM, Mu X, Myers E, Negre B, Newfeld S, Nielsen R, Noor MA, O'Grady P, Pachter L, Papaceit M, Parisi MJ, Parisi M, Parts L, Pedersen JS, Pesole G, Phillippy AM, Ponting CP, Pop M, Porcelli D, Powell JR, Prohaska S, Pruitt K, Puig M, Quesneville H, Ram KR, Rand D, Rasmussen MD, Reed LK, Reenan R, Reily A, Remington KA, Rieger TT, Ritchie MG, Robin C, Rogers YH, Rohde C, Rozas J, Rubenfield MJ, Ruiz A, Russo S, Salzberg SL, Sanchez-Gracia A, Saranga DJ, Sato H, Schaeffer SW, Schatz MC, Schlenke T, Schwartz R, Segarra C, Singh RS, Sirot L, Sirota M, Sisneros NB, Smith CD, Smith TF, Spieth J, Stage DE, Stark A, Stephan W, Strausberg RL, Strempel S, Sturgill D, Sutton G, Sutton GG, Tao W, Teichmann S, Tobari YN, Tomimura Y, Tsolas JM, Valente VL, Venter E, Venter JC, Vicario S, Vieira FG, Vilella AJ, Villasante A, Walenz B, Wang J, Wasserman M, Watts T, Wilson D, Wilson RK, Wing RA, Wolfner MF, Wong A, Wong GK, Wu CI, Wu G, Yamamoto D, Yang HP, Yang SP, Yorke JA, Yoshida K, Zdobnov E, Zhang P, Zhang Y, Zimin AV, Baldwin J, Abdouelleil A, Abdulkadir J, Abebe A, Abera B, Abreu J, Acer SC, Aftuck L, Alexander A, An P, Anderson E, Anderson S, Arachi H, Azer M, Bachantsang P, Barry A, Bayul T, Berlin A, Bessette D, Bloom T, Blye J, Boguslavskiy L, Bonnet C, Boukhgalter B, Bourzgui I, Brown A, Cahill P, Channer S, Cheshatsang Y, Chuda L, Citroen M, Collymore A, Cooke P, Costello M, D'Aco K, Daza R, De Haan G, DeGray S, DeMaso C, Dhargay N, Dooley K, Dooley E, Doricent M, Dorje P, Dorjee K, Dupes A, Elong R, Falk J, Farina A, Faro S, Ferguson D, Fisher S, Foley CD, Franke A, Friedrich D, Gadbois L, Gearin G, Gearin CR, Giannoukos G, Goode T, Graham J, Grandbois E, Grewal S, Gyaltsen K, Hafez N, Hagos B, Hall J, Henson C, Hollinger A, Honan T, Huard MD, Hughes L, Hurhula B, Husby ME, Kamat A, Kanga B, Kashin S, Khazanovich D, Kisner P, Lance K, Lara M, Lee W, Lennon N, Letendre F, LeVine R, Lipovsky A, Liu X, Liu J, Liu S, Lokyitsang T, Lokyitsang Y, Lubonja R, Lui A, MacDonald P, Magnisalis V, Maru K, Matthews C, McCusker W, McDonough S, Mehta T, Meldrim J, Meneus L, Mihai O, Mihalev A, Mihova T, Mittelman R, Mlenga V, Montmayeur A, Mulrain L, Navidi A, Naylor J, Negash T, Nguyen T, Nguyen N, Nicol R, Norbu C, Norbu N, Novod N, O'Neill B, Osman S, Markiewicz E, Oyono OL, Patti C, Phunkhang P, Pierre F, Priest M, Raghuraman S, Rege F, Reyes R, Rise C, Rogov P, Ross K, Ryan E, Settipalli S, Shea T, Sherpa N, Shi L, Shih D, Sparrow T, Spaulding J, Stalker J, Stange-Thomann N, Stavropoulos S, Stone C, Strader C, Tesfaye S, Thomson T, Thoulutsang Y, Thoulutsang D, Topham K, Topping I, Tsamla T, Vassiliev H, Vo A, Wangchuk T, Wangdi T, Weiand M, Wilkinson J, Wilson A, Yadav S, Young G, Yu Q, Zembek L, Zhong D, Zimmer A, Zwirko Z, Jaffe DB, Alvarez P, Brockman W, Butler J, Chin C, Gnerre S, Grabherr M, Kleber M, Mauceli E, MacCallum I | s2cid = 2416812 | display-authors = 6 | title = Evolution of genes and genomes on the Drosophila phylogeny | journal = Nature | volume = 450 | issue = 7167 | pages = 203–18 | date = November 2007 | pmid = 17994087 | doi = 10.1038/nature06341 | bibcode = 2007Natur.450..203C }}</ref>)
*** ''[[Drosophila biarmipes]]'', fruit fly (2011<ref name="modEncode">{{cite web | title = Drosophila modENCODE Project BCM-HGSC | url = http://www.hgsc.bcm.tmc.edu/project-species-i-Drosophila_modENCODE.hgsc | work = Baylor College of Medicine, Human Genome Sequencing Center }}</ref>)
*** ''[[Drosophila bipectinata]]'', fruit fly (2011<ref name="modEncode" />)
*** ''[[Drosophila erecta]]'', fruit fly (2007<ref name="D12GC" />)
*** ''[[Drosophila elegans]]'', fruit fly (2011<ref name="modEncode" />)
*** ''[[Drosophila eugracilis]]'', fruit fly (2011<ref name="modEncode" />)
*** ''[[Drosophila ficusphila]]'', fruit fly (2011<ref name="modEncode" />)
*** ''[[Drosophila grimshawi]]'', fruit fly (2007<ref name="D12GC" />)
*** ''[[Drosophila kikkawai]]'', fruit fly (2011<ref name="modEncode" />)
*** ''[[Drosophila melanogaster]]'', fruit fly (model organism) (2000<ref name="Adams">{{cite journal | vauthors = Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF, George RA, Lewis SE, Richards S, Ashburner M, Henderson SN, Sutton GG, Wortman JR, Yandell MD, Zhang Q, Chen LX, Brandon RC, Rogers YH, Blazej RG, Champe M, Pfeiffer BD, Wan KH, Doyle C, Baxter EG, Helt G, Nelson CR, Gabor GL, Abril JF, Agbayani A, An HJ, Andrews-Pfannkoch C, Baldwin D, Ballew RM, Basu A, Baxendale J, Bayraktaroglu L, Beasley EM, Beeson KY, Benos PV, Berman BP, Bhandari D, Bolshakov S, Borkova D, Botchan MR, Bouck J, Brokstein P, Brottier P, Burtis KC, Busam DA, Butler H, Cadieu E, Center A, Chandra I, Cherry JM, Cawley S, Dahlke C, Davenport LB, Davies P, de Pablos B, Delcher A, Deng Z, Mays AD, Dew I, Dietz SM, Dodson K, Doup LE, Downes M, Dugan-Rocha S, Dunkov BC, Dunn P, Durbin KJ, Evangelista CC, Ferraz C, Ferriera S, Fleischmann W, Fosler C, Gabrielian AE, Garg NS, Gelbart WM, Glasser K, Glodek A, Gong F, Gorrell JH, Gu Z, Guan P, Harris M, Harris NL, Harvey D, Heiman TJ, Hernandez JR, Houck J, Hostin D, Houston KA, Howland TJ, Wei MH, Ibegwam C, Jalali M, Kalush F, Karpen GH, Ke Z, Kennison JA, Ketchum KA, Kimmel BE, Kodira CD, Kraft C, Kravitz S, Kulp D, Lai Z, Lasko P, Lei Y, Levitsky AA, Li J, Li Z, Liang Y, Lin X, Liu X, Mattei B, McIntosh TC, McLeod MP, McPherson D, Merkulov G, Milshina NV, Mobarry C, Morris J, Moshrefi A, Mount SM, Moy M, Murphy B, Murphy L, Muzny DM, Nelson DL, Nelson DR, Nelson KA, Nixon K, Nusskern DR, Pacleb JM, Palazzolo M, Pittman GS, Pan S, Pollard J, Puri V, Reese MG, Reinert K, Remington K, Saunders RD, Scheeler F, Shen H, Shue BC, Sidén-Kiamos I, Simpson M, Skupski MP, Smith T, Spier E, Spradling AC, Stapleton M, Strong R, Sun E, Svirskas R, Tector C, Turner R, Venter E, Wang AH, Wang X, Wang ZY, Wassarman DA, Weinstock GM, Weissenbach J, Williams SM, Worley KC, Wu D, Yang S, Yao QA, Ye J, Yeh RF, Zaveri JS, Zhan M, Zhang G, Zhao Q, Zheng L, Zheng XH, Zhong FN, Zhong W, Zhou X, Zhu S, Zhu X, Smith HO, Gibbs RA, Myers EW, Rubin GM, Venter JC | display-authors = 6 | title = The genome sequence of Drosophila melanogaster | journal = Science | volume = 287 | issue = 5461 | pages = 2185–95 | date = March 2000 | pmid = 10731132 | doi = 10.1126/science.287.5461.2185 | bibcode = 2000Sci...287.2185. }}</ref>)
*** ''[[Drosophila mojavensis]]'', fruit fly (2007<ref name="D12GC" />)
*** ''[[Drosophila neotestacea]]'', fruit fly (transcriptome 2014<ref>{{cite journal | vauthors = Hamilton PT, Leong JS, Koop BF, Perlman SJ | title = Transcriptional responses in a Drosophila defensive symbiosis | journal = Molecular Ecology | volume = 23 | issue = 6 | pages = 1558–70 | date = March 2014 | pmid = 24274471 | doi = 10.1111/mec.12603 | s2cid = 2964885 | url = https://dspace.library.uvic.ca//handle/1828/8389 }}</ref>)
*** ''[[Drosophila persimilis]]'', fruit fly (2007<ref name="D12GC" />)
*** ''[[Drosophila pseudoobscura]]'', fruit fly (2005<ref>{{cite journal | vauthors = Richards S, Liu Y, Bettencourt BR, Hradecky P, Letovsky S, Nielsen R, Thornton K, Hubisz MJ, Chen R, Meisel RP, Couronne O, Hua S, Smith MA, Zhang P, Liu J, Bussemaker HJ, van Batenburg MF, Howells SL, Scherer SE, Sodergren E, Matthews BB, Crosby MA, Schroeder AJ, Ortiz-Barrientos D, Rives CM, Metzker ML, Muzny DM, Scott G, Steffen D, Wheeler DA, Worley KC, Havlak P, Durbin KJ, Egan A, Gill R, Hume J, Morgan MB, Miner G, Hamilton C, Huang Y, Waldron L, Verduzco D, Clerc-Blankenburg KP, Dubchak I, Noor MA, Anderson W, White KP, Clark AG, Schaeffer SW, Gelbart W, Weinstock GM, Gibbs RA | display-authors = 6 | title = Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution | journal = Genome Research | volume = 15 | issue = 1 | pages = 1–18 | date = January 2005 | pmid = 15632085 | pmc = 540289 | doi = 10.1101/gr.3059305 }}</ref>)
*** ''[[Drosophila rhopaloa]]'', fruit fly (2011<ref name="modEncode" />)
*** ''[[Drosophila santomea]]'', fruit fly (<ref>{{cite web | title = The Drosophila santomea genome - release 1.0 | url = http://genomics.princeton.edu/AndolfattoLab/Dsantomea_genome.html | work = Andolfatto Lab | publisher = Princeton University | access-date = 2012-05-23 | archive-date = 2018-10-22 | archive-url = https://web.archive.org/web/20181022103116/http://genomics.princeton.edu/AndolfattoLab/Dsantomea_genome.html | url-status = dead }}</ref>)
*** ''[[Drosophila sechellia]]'', fruit fly (2007<ref name="D12GC" />)
*** ''[[Drosophila simulans]]'', fruit fly (2007<ref name="D12GC" />)
*** ''[[Drosophila takahashi]]'', fruit fly (2011<ref name="modEncode" />)
*** ''[[Drosophila virilis]]'', fruit fly (2007<ref name="D12GC" />)
*** ''[[Drosophila willistoni]]'', fruit fly (2007<ref name="D12GC" />)
*** ''[[Drosophila yakuba]]'', fruit fly (2007<ref name="D12GC" />)
** Family [[Phoridae]]
*** ''[[Megaselia abdita]]'', [[scuttle fly]] (transcriptome 2013<ref name="Jimenez-Guri2013" />)
** Family [[Psychodidae]] (drain flies)
*** ''[[Clogmia albipunctata]]'', [[moth midge]] (transcriptome 2013<ref name="Jimenez-Guri2013">{{cite journal | vauthors = Jiménez-Guri E, Huerta-Cepas J, Cozzuto L, Wotton KR, Kang H, Himmelbauer H, Roma G, Gabaldón T, Jaeger J | display-authors = 6 | title = Comparative transcriptomics of early dipteran development | journal = BMC Genomics | volume = 14 | pages = 123 | date = February 2013 | pmid = 23432914 | pmc = 3616871 | doi = 10.1186/1471-2164-14-123 }}</ref>)
** Family [[Flesh fly|Sarcophagidae]] (flesh flies)
*** ''[[Sarcophaga bullata|Sarcophaga Bullata]]'', [[Flesh fly]] (2019<ref>{{cite journal | vauthors = Martinson EO, Peyton J, Kelkar YD, Jennings EC, Benoit JB, Werren JH, Denlinger DL | title = Sarcophaga bullata | journal = G3 | volume = 9 | issue = 5 | pages = 1313–1320 | date = May 2019 | pmid = 30926723 | pmc = 6505164 | doi = 10.1534/g3.119.400148 }}</ref>)
** Family [[Syrphidae]] (hoverflies)
*** ''[[Episyrphus balteatus]]'', [[hoverfly]] (transcriptome 2011<ref>{{cite journal | vauthors = Lemke S, Antonopoulos DA, Meyer F, Domanus MH, Schmidt-Ott U | title = BMP signaling components in embryonic transcriptomes of the hover fly Episyrphus balteatus (Syrphidae) | journal = BMC Genomics | volume = 12 | pages = 278 | date = May 2011 | pmid = 21627820 | pmc = 3224130 | doi = 10.1186/1471-2164-12-278 }}</ref>)
* Order [[Hemiptera]]
** ''[[Acyrthosiphon pisum]]'', [[aphid]] (pea aphid) (2010<ref name="aphid">{{cite journal | title = Genome sequence of the pea aphid Acyrthosiphon pisum | journal = PLOS Biology | volume = 8 | issue = 2 | pages = e1000313 | date = February 2010 | pmid = 20186266 | pmc = 2826372 | doi = 10.1371/journal.pbio.1000313 | author1 = International Aphid Genomics Consortium }}</ref>)
** ''Ericerus pela'', [[Chinese wax|Chinese wax scale insect]] (2019)<ref>{{cite journal | vauthors = Yang P, Yu S, Hao J, Liu W, Zhao Z, Zhu Z, Sun T, Wang X, Song Q | display-authors = 6 | title = Genome sequence of the Chinese white wax scale insect Ericerus pela: the first draft genome for the Coccidae family of scale insects | journal = GigaScience | volume = 8 | issue = 9 | date = September 2019 | pmid = 31518402 | pmc = 6743827 | doi = 10.1093/gigascience/giz113 }}</ref>
** ''[[Laodelphax striatellus]]'', [[small brown planthopper]] (2017<ref>{{cite journal | vauthors = Zhu J, Jiang F, Wang X, Yang P, Bao Y, Zhao W, Wang W, Lu H, Wang Q, Cui N, Li J, Chen X, Luo L, Yu J, Kang L, Cui F | display-authors = 6 | title = Genome sequence of the small brown planthopper, Laodelphax striatellus | journal = GigaScience | volume = 6 | issue = 12 | pages = 1–12 | date = December 2017 | pmid = 29136191 | pmc = 5740986 | doi = 10.1093/gigascience/gix109 }}</ref>)
** [[Spotted lanternfly|''Lycorma delicatula'', spotted lanternfly]] (2019<ref>{{cite journal | vauthors = Kingan SB, Urban J, Lambert CC, Baybayan P, Childers AK, Coates B, Scheffler B, Hackett K, Korlach J, Geib SM | display-authors = 6 | title = A high-quality genome assembly from a single, field-collected spotted lanternfly (Lycorma delicatula) using the PacBio Sequel II system | journal = GigaScience | volume = 8 | issue = 10 | date = October 2019 | pmid = 31609423 | pmc = 6791401 | doi = 10.1093/gigascience/giz122 }}</ref>)
** ''[[Rhodnius prolixus]]'', kissing-bug (2015<ref>{{cite journal | vauthors = Mesquita RD, Vionette-Amaral RJ, Lowenberger C, Rivera-Pomar R, Monteiro FA, Minx P, Spieth J, Carvalho AB, Panzera F, Lawson D, Torres AQ, Ribeiro JM, Sorgine MH, Waterhouse RM, Montague MJ, Abad-Franch F, Alves-Bezerra M, Amaral LR, Araujo HM, Araujo RN, Aravind L, Atella GC, Azambuja P, Berni M, Bittencourt-Cunha PR, Braz GR, Calderón-Fernández G, Carareto CM, Christensen MB, Costa IR, Costa SG, Dansa M, Daumas-Filho CR, De-Paula IF, Dias FA, Dimopoulos G, Emrich SJ, Esponda-Behrens N, Fampa P, Fernandez-Medina RD, da Fonseca RN, Fontenele M, Fronick C, Fulton LA, Gandara AC, Garcia ES, Genta FA, Giraldo-Calderón GI, Gomes B, Gondim KC, Granzotto A, Guarneri AA, Guigó R, Harry M, Hughes DS, Jablonka W, Jacquin-Joly E, Juárez MP, Koerich LB, Lange AB, Latorre-Estivalis JM, Lavore A, Lawrence GG, Lazoski C, Lazzari CR, Lopes RR, Lorenzo MG, Lugon MD, Majerowicz D, Marcet PL, Mariotti M, Masuda H, Megy K, Melo AC, Missirlis F, Mota T, Noriega FG, Nouzova M, Nunes RD, Oliveira RL, Oliveira-Silveira G, Ons S, Orchard I, Pagola L, Paiva-Silva GO, Pascual A, Pavan MG, Pedrini N, Peixoto AA, Pereira MH, Pike A, Polycarpo C, Prosdocimi F, Ribeiro-Rodrigues R, Robertson HM, Salerno AP, Salmon D, Santesmasses D, Schama R, Seabra-Junior ES, Silva-Cardoso L, Silva-Neto MA, Souza-Gomes M, Sterkel M, Taracena ML, Tojo M, Tu ZJ, Tubio JM, Ursic-Bedoya R, Venancio TM, Walter-Nuno AB, Wilson D, Warren WC, Wilson RK, Huebner E, Dotson EM, Oliveira PL | display-authors = 6 | title = Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection | journal = Proceedings of the National Academy of Sciences of the United States of America | volume = 112 | issue = 48 | pages = 14936–41 | date = December 2015 | pmid = 26627243 | pmc = 4672799 | doi = 10.1073/pnas.1506226112 | bibcode = 2015PNAS..11214936M }}</ref>)
** ''[[Rhopalosiphum maidis]]'', [[Rhopalosiphum maidis|Corn leaf aphid]] (2019<ref>{{cite journal | vauthors = Chen W, Shakir S, Bigham M, Richter A, Fei Z, Jander G | title = Genome sequence of the corn leaf aphid (Rhopalosiphum maidis Fitch) | journal = GigaScience | volume = 8 | issue = 4 | date = April 2019 | pmid = 30953568 | pmc = 6451198 | doi = 10.1093/gigascience/giz033 }}</ref>)
** ''[[Sitobion miscanthi]]'', Indian grain aphid (2019<ref>{{Cite journal| vauthors = Chen J, Fan J, Zhang Y, Li Q, Zhang S, Yin H, Qin Y, Zhang Q, Jiang X | display-authors = 6 |date=2019-08-01|title=A chromosome-level draft genome of the grain aphid Sitobion miscanthi |journal=GigaScience |volume=8 |issue=8 |doi=10.1093/gigascience/giz101 | pmid = 31430367 | pmc = 6701489 }}</ref>)
** ''[[Triatoma|Triatoma rubrofasciata]]'', assassin bug (2019<ref>{{cite journal | vauthors = Liu Q, Guo Y, Zhang Y, Hu W, Li Y, Zhu D, Zhou Z, Wu J, Chen N, Zhou XN | display-authors = 6 | title = A chromosomal-level genome assembly for the insect vector for Chagas disease, Triatoma rubrofasciata | journal = GigaScience | volume = 8 | issue = 8 | date = August 2019 | pmid = 31425588 | pmc = 6699579 | doi = 10.1093/gigascience/giz089 }}</ref>)
* Order [[Hymenoptera]]
** ''[[Acromyrmex echinatior]]'' <small>colony Ae372</small>, [[ant]] (Panamanian leafcutter) (2011<ref>{{cite journal | vauthors = Nygaard S, Zhang G, Schiøtt M, Li C, Wurm Y, Hu H, Zhou J, Ji L, Qiu F, Rasmussen M, Pan H, Hauser F, Krogh A, Grimmelikhuijzen CJ, Wang J, Boomsma JJ | display-authors = 6 | title = The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming | journal = Genome Research | volume = 21 | issue = 8 | pages = 1339–48 | date = August 2011 | pmid = 21719571 | pmc = 3149500 | doi = 10.1101/gr.121392.111 }}</ref>)
** ''[[Apis mellifera]]'', [[bee]] (honey bee), (model for [[Eusociality|eusocial behavior]]) (2006<ref>{{cite journal | author = Honeybee Genome Sequencing Consortium | title = Insights into social insects from the genome of the honeybee Apis mellifera | journal = Nature | volume = 443 | issue = 7114 | pages = 931–49 | date = October 2006 | pmid = 17073008 | pmc = 2048586 | doi = 10.1038/nature05260 | bibcode = 2006Natur.443..931T }}</ref>)
** ''[[Atta cephalotes]]'', [[ant]] (leaf-cutter ant) (2011<ref>{{cite journal | vauthors = Suen G, Teiling C, Li L, Holt C, Abouheif E, Bornberg-Bauer E, Bouffard P, Caldera EJ, Cash E, Cavanaugh A, Denas O, Elhaik E, Favé MJ, Gadau J, Gibson JD, Graur D, Grubbs KJ, Hagen DE, Harkins TT, Helmkampf M, Hu H, Johnson BR, Kim J, Marsh SE, Moeller JA, Muñoz-Torres MC, Murphy MC, Naughton MC, Nigam S, Overson R, Rajakumar R, Reese JT, Scott JJ, Smith CR, Tao S, Tsutsui ND, Viljakainen L, Wissler L, Yandell MD, Zimmer F, Taylor J, Slater SC, Clifton SW, Warren WC, Elsik CG, Smith CD, Weinstock GM, Gerardo NM, Currie CR | display-authors = 6 | title = The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle | journal = PLOS Genetics | volume = 7 | issue = 2 | pages = e1002007 | date = February 2011 | pmid = 21347285 | pmc = 3037820 | doi = 10.1371/journal.pgen.1002007 | editor1-last = Copenhaver | editor1-first = Gregory }}</ref>)
** ''[[Camponotus floridanus]]'', [[ant]] (2010<ref name="Bonasio2010">{{cite journal | vauthors = Bonasio R, Zhang G, Ye C, Mutti NS, Fang X, Qin N, Donahue G, Yang P, Li Q, Li C, Zhang P, Huang Z, Berger SL, Reinberg D, Wang J, Liebig J | display-authors = 6 | title = Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator | journal = Science | volume = 329 | issue = 5995 | pages = 1068–71 | date = August 2010 | pmid = 20798317 | pmc = 3772619 | doi = 10.1126/science.1192428 | bibcode = 2010Sci...329.1068B }}</ref>)
** ''[[Cerapachys biroi]]'', [[ant]] (clonal raider ant)(2014<ref>{{cite journal | vauthors = Oxley PR, Ji L, Fetter-Pruneda I, McKenzie SK, Li C, Hu H, Zhang G, Kronauer DJ | title = The genome of the clonal raider ant Cerapachys biroi | journal = Current Biology | volume = 24 | issue = 4 | pages = 451–8 | date = February 2014 | pmid = 24508170 | pmc = 3961065 | doi = 10.1016/j.cub.2014.01.018 }}</ref>)
** ''[[Harpegnathos saltator]]'', [[ant]] (2010<ref name="Bonasio2010"/>)
** ''[[Lasius niger]]'', [[ant]] (black garden ant)(2017<ref>{{cite journal | vauthors = Konorov EA, Nikitin MA, Mikhailov KV, Lysenkov SN, Belenky M, Chang PL, Nuzhdin SV, Scobeyeva VA | title = Genomic exaptation enables Lasius niger adaptation to urban environments | journal = BMC Evolutionary Biology | volume = 17 | issue = Suppl 1 | pages = 39 | date = February 2017 | pmid = 28251870 | pmc = 5333191 | doi = 10.1186/s12862-016-0867-x }}</ref>)
** ''[[Linepithema humile]]'', [[ant]] (Argentine ant) (2011<ref>{{cite journal | vauthors = Smith CD, Zimin A, Holt C, Abouheif E, Benton R, Cash E, Croset V, Currie CR, Elhaik E, Elsik CG, Fave MJ, Fernandes V, Gadau J, Gibson JD, Graur D, Grubbs KJ, Hagen DE, Helmkampf M, Holley JA, Hu H, Viniegra AS, Johnson BR, Johnson RM, Khila A, Kim JW, Laird J, Mathis KA, Moeller JA, Muñoz-Torres MC, Murphy MC, Nakamura R, Nigam S, Overson RP, Placek JE, Rajakumar R, Reese JT, Robertson HM, Smith CR, Suarez AV, Suen G, Suhr EL, Tao S, Torres CW, van Wilgenburg E, Viljakainen L, Walden KK, Wild AL, Yandell M, Yorke JA, Tsutsui ND | display-authors = 6 | title = Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile) | journal = Proceedings of the National Academy of Sciences of the United States of America | volume = 108 | issue = 14 | pages = 5673–8 | date = April 2011 | pmid = 21282631 | pmc = 3078359 | doi = 10.1073/pnas.1008617108 | bibcode = 2011PNAS..108.5673S }}</ref>)
** ''[[Nasonia giraulti]]'', [[wasp]] (parasitoid wasp) (2010<ref name="Werren2010">{{cite journal | vauthors = Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA, Murphy T, Oliveira DC, Smith CD, van de Zande L, Worley KC, Zdobnov EM, Aerts M, Albert S, Anaya VH, Anzola JM, Barchuk AR, Behura SK, Bera AN, Berenbaum MR, Bertossa RC, Bitondi MM, Bordenstein SR, Bork P, Bornberg-Bauer E, Brunain M, Cazzamali G, Chaboub L, Chacko J, Chavez D, Childers CP, Choi JH, Clark ME, Claudianos C, Clinton RA, Cree AG, Cristino AS, Dang PM, Darby AC, de Graaf DC, Devreese B, Dinh HH, Edwards R, Elango N, Elhaik E, Ermolaeva O, Evans JD, Foret S, Fowler GR, Gerlach D, Gibson JD, Gilbert DG, Graur D, Gründer S, Hagen DE, Han Y, Hauser F, Hultmark D, Hunter HC, Hurst GD, Jhangian SN, Jiang H, Johnson RM, Jones AK, Junier T, Kadowaki T, Kamping A, Kapustin Y, Kechavarzi B, Kim J, Kim J, Kiryutin B, Koevoets T, Kovar CL, Kriventseva EV, Kucharski R, Lee H, Lee SL, Lees K, Lewis LR, Loehlin DW, Logsdon JM, Lopez JA, Lozado RJ, Maglott D, Maleszka R, Mayampurath A, Mazur DJ, McClure MA, Moore AD, Morgan MB, Muller J, Munoz-Torres MC, Muzny DM, Nazareth LV, Neupert S, Nguyen NB, Nunes FM, Oakeshott JG, Okwuonu GO, Pannebakker BA, Pejaver VR, Peng Z, Pratt SC, Predel R, Pu LL, Ranson H, Raychoudhury R, Rechtsteiner A, Reese JT, Reid JG, Riddle M, Robertson HM, Romero-Severson J, Rosenberg M, Sackton TB, Sattelle DB, Schlüns H, Schmitt T, Schneider M, Schüler A, Schurko AM, Shuker DM, Simões ZL, Sinha S, Smith Z, Solovyev V, Souvorov A, Springauf A, Stafflinger E, Stage DE, Stanke M, Tanaka Y, Telschow A, Trent C, Vattathil S, Verhulst EC, Viljakainen L, Wanner KW, Waterhouse RM, Whitfield JB, Wilkes TE, Williamson M, Willis JH, Wolschin F, Wyder S, Yamada T, Yi SV, Zecher CN, Zhang L, Gibbs RA | display-authors = 6 | title = Functional and evolutionary insights from the genomes of three parasitoid Nasonia species | journal = Science | volume = 327 | issue = 5963 | pages = 343–8 | date = January 2010 | pmid = 20075255 | pmc = 2849982 | doi = 10.1126/science.1178028 | bibcode = 2010Sci...327..343. }}</ref>)
** ''[[Nasonia longicornis]]'', [[wasp]] (parasitoid wasp) (2010<ref name="Werren2010"/>)
** ''[[Nasonia vitripennis]]'', [[wasp]] (parasitoid wasp; model organism) (2010<ref name="Werren2010"/>)
** ''[[Alkali bee|Nomia Melanderi]]'', [[Alkali bee]] (2019<ref>{{cite journal | vauthors = Kapheim KM, Pan H, Li C, Blatti C, Harpur BA, Ioannidis P, Jones BM, Kent CF, Ruzzante L, Sloofman L, Stolle E, Waterhouse RM, Zayed A, Zhang G, Wcislo WT | display-authors = 6 | title = Nomia melanderi) | journal = G3 | volume = 9 | issue = 3 | pages = 625–634 | date = March 2019 | pmid = 30642875 | pmc = 6404593 | doi = 10.1534/g3.118.200865 }}</ref>)
** ''[[Pogonomyrmex barbatus]]'', [[ant]] (red harvester ant) (2011<ref>{{cite journal | vauthors = Smith CR, Smith CD, Robertson HM, Helmkampf M, Zimin A, Yandell M, Holt C, Hu H, Abouheif E, Benton R, Cash E, Croset V, Currie CR, Elhaik E, Elsik CG, Favé MJ, Fernandes V, Gibson JD, Graur D, Gronenberg W, Grubbs KJ, Hagen DE, Viniegra AS, Johnson BR, Johnson RM, Khila A, Kim JW, Mathis KA, Munoz-Torres MC, Murphy MC, Mustard JA, Nakamura R, Niehuis O, Nigam S, Overson RP, Placek JE, Rajakumar R, Reese JT, Suen G, Tao S, Torres CW, Tsutsui ND, Viljakainen L, Wolschin F, Gadau J | display-authors = 6 | title = Draft genome of the red harvester ant Pogonomyrmex barbatus | journal = Proceedings of the National Academy of Sciences of the United States of America | volume = 108 | issue = 14 | pages = 5667–72 | date = April 2011 | pmid = 21282651 | pmc = 3078412 | doi = 10.1073/pnas.1007901108 | bibcode = 2011PNAS..108.5667S }}</ref>)
** ''[[Solenopsis invicta]]'', [[ant]] (fire ant) (2011<ref name="Wurm2011">{{cite journal | vauthors = Wurm Y, Wang J, Riba-Grognuz O, Corona M, Nygaard S, Hunt BG, Ingram KK, Falquet L, Nipitwattanaphon M, Gotzek D, Dijkstra MB, Oettler J, Comtesse F, Shih CJ, Wu WJ, Yang CC, Thomas J, Beaudoing E, Pradervand S, Flegel V, Cook ED, Fabbretti R, Stockinger H, Long L, Farmerie WG, Oakey J, Boomsma JJ, Pamilo P, Yi SV, Heinze J, Goodisman MA, Farinelli L, Harshman K, Hulo N, Cerutti L, Xenarios I, Shoemaker D, Keller L | display-authors = 6 | title = The genome of the fire ant Solenopsis invicta | journal = Proceedings of the National Academy of Sciences of the United States of America | volume = 108 | issue = 14 | pages = 5679–84 | date = April 2011 | pmid = 21282665 | pmc = 3078418 | doi = 10.1073/pnas.1009690108 | bibcode = 2011PNAS..108.5679W }}</ref>)
* Order [[Lepidoptera]]
** ''[[Antheraea yamamai|Antharaea yamamai]]'', [[Antheraea yamamai|Japanese oak silk moth]] (2019<ref>{{cite journal | vauthors = Kim SR, Kwak W, Kim H, Caetano-Anolles K, Kim KY, Kim SB, Choi KH, Kim SW, Hwang JS, Kim M, Kim I, Goo TW, Park SW | display-authors = 6 | title = Genome sequence of the Japanese oak silk moth, Antheraea yamamai: the first draft genome in the family Saturniidae | journal = GigaScience | volume = 7 | issue = 1 | pages = 1–11 | date = January 2018 | pmid = 29186418 | pmc = 5774507 | doi = 10.1093/gigascience/gix113 }}</ref>'')''
**''[[Parasemia plantaginis|Arctia plantaginis]],'' Wood tiger moth (2020<ref>{{cite journal | vauthors = Yen EC, McCarthy SA, Galarza JA, Generalovic TN, Pelan S, Nguyen P, Meier JI, Warren IA, Mappes J, Durbin R, Jiggins CD | display-authors = 6 | title = A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning | journal = GigaScience | volume = 9 | issue = 8 | date = August 2020 | pmid = 32808665 | pmc = 7433188 | doi = 10.1093/gigascience/giaa088 }}</ref>)
** ''[[Bicyclus anynana]]'', [[Bicyclus anynana|squinting bush brown]] (2017<ref>{{cite journal | vauthors = Nowell RW, Elsworth B, Oostra V, Zwaan BJ, Wheat CW, Saastamoinen M, Saccheri IJ, Van't Hof AE, Wasik BR, Connahs H, Aslam ML, Kumar S, Challis RJ, Monteiro A, Brakefield PM, Blaxter M | display-authors = 6 | title = A high-coverage draft genome of the mycalesine butterfly Bicyclus anynana | journal = GigaScience | volume = 6 | issue = 7 | pages = 1–7 | date = July 2017 | pmid = 28486658 | pmc = 5493746 | doi = 10.1093/gigascience/gix035 }}</ref>)
** ''[[Bombyx mori]]'' <small>Strain:p50T</small>, [[moth]] (domestic [[silk]] worm) (2004<ref>{{cite journal | vauthors = Mita K, Kasahara M, Sasaki S, Nagayasu Y, Yamada T, Kanamori H, Namiki N, Kitagawa M, Yamashita H, Yasukochi Y, Kadono-Okuda K, Yamamoto K, Ajimura M, Ravikumar G, Shimomura M, Nagamura Y, Shin-I T, Abe H, Shimada T, Morishita S, Sasaki T | title = The genome sequence of silkworm, Bombyx mori | journal = DNA Research | volume = 11 | issue = 1 | pages = 27–35 | date = February 2004 | pmid = 15141943 | doi = 10.1093/dnares/11.1.27 }}</ref>)
** ''[[Codling moth|Cydia pomonella]]'', codling moth (2019)<ref>{{cite journal | vauthors = Wan F, Yin C, Tang R, Chen M, Wu Q, Huang C, Qian W, Rota-Stabelli O, Yang N, Wang S, Wang G, Zhang G, Guo J, Gu LA, Chen L, Xing L, Xi Y, Liu F, Lin K, Guo M, Liu W, He K, Tian R, Jacquin-Joly E, Franck P, Siegwart M, Ometto L, Anfora G, Blaxter M, Meslin C, Nguyen P, Dalíková M, Marec F, Olivares J, Maugin S, Shen J, Liu J, Guo J, Luo J, Liu B, Fan W, Feng L, Zhao X, Peng X, Wang K, Liu L, Zhan H, Liu W, Shi G, Jiang C, Jin J, Xian X, Lu S, Ye M, Li M, Yang M, Xiong R, Walters JR, Li F | display-authors = 6 | title = A chromosome-level genome assembly of Cydia pomonella provides insights into chemical ecology and insecticide resistance | journal = Nature Communications | volume = 10 | issue = 1 | pages = 4237 | date = September 2019 | pmid = 31530873 | pmc = 6748993 | doi = 10.1038/s41467-019-12175-9 | bibcode = 2019NatCo..10.4237W }}</ref>
** ''[[Danaus plexippus]]'', [[butterfly]] ([[monarch butterfly]]) (2011<ref>{{cite journal | vauthors = Zhan S, Merlin C, Boore JL, Reppert SM | title = The monarch butterfly genome yields insights into long-distance migration | journal = Cell | volume = 147 | issue = 5 | pages = 1171–85 | date = November 2011 | pmid = 22118469 | pmc = 3225893 | doi = 10.1016/j.cell.2011.09.052 }}</ref>)
** ''[[Heliconius melpomene]]'', [[butterfly]] (2012<ref>{{cite journal | vauthors = Dasmahapatra KK| title = Butterfly genome reveals promiscuous exchange of mimicry adaptations among species | journal = Nature | volume = 487 | issue = 7405 | pages = 94–8 | date = July 2012 | pmid = 22722851 | pmc = 3398145 | doi = 10.1038/nature11041 | bibcode = 2012Natur.487...94T }}</ref>)
** [[Glanville fritillary|''Melitaea cinxia'']], Glanville fritillary butterfly (2014<ref>{{cite journal | vauthors = Ahola V, Lehtonen R, Somervuo P, Salmela L, Koskinen P, Rastas P, Välimäki N, Paulin L, Kvist J, Wahlberg N, Tanskanen J, Hornett EA, Ferguson LC, Luo S, Cao Z, de Jong MA, Duplouy A, Smolander OP, Vogel H, McCoy RC, Qian K, Chong WS, Zhang Q, Ahmad F, Haukka JK, Joshi A, Salojärvi J, Wheat CW, Grosse-Wilde E, Hughes D, Katainen R, Pitkänen E, Ylinen J, Waterhouse RM, Turunen M, Vähärautio A, Ojanen SP, Schulman AH, Taipale M, Lawson D, Ukkonen E, Mäkinen V, Goldsmith MR, Holm L, Auvinen P, Frilander MJ, Hanski I | display-authors = 6 | title = The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera | journal = Nature Communications | volume = 5 | issue = 1 | pages = 4737 | date = September 2014 | pmid = 25189940 | pmc = 4164777 | doi = 10.1038/ncomms5737 | bibcode = 2014NatCo...5.4737A }}</ref>)
** ''[[Megathymus ursus|Megathymus ursus violae]]'', bear giant skipper butterfly (2018<ref>{{cite journal | vauthors = Cong Q, Li W, Borek D, Otwinowski Z, Grishin NV | title = The Bear Giant-Skipper genome suggests genetic adaptations to living inside yucca roots | journal = Molecular Genetics and Genomics | volume = 294 | issue = 1 | pages = 211–226 | date = February 2019 | pmid = 30293092 | pmc = 6436644 | doi = 10.1007/s00438-018-1494-6 }}</ref>)
** ''[[Papilio bianor]]'', Chinese peacock butterfly (2019<ref>{{cite journal | vauthors = Lu S, Yang J, Dai X, Xie F, He J, Dong Z, Mao J, Liu G, Chang Z, Zhao R, Wan W, Zhang R, Li Y, Wang W, Li X | display-authors = 6 | title = Chromosomal-level reference genome of Chinese peacock butterfly (Papilio bianor) based on third-generation DNA sequencing and Hi-C analysis | journal = GigaScience | volume = 8 | issue = 11 | date = November 2019 | pmid = 31682256 | pmc = 6827417 | doi = 10.1093/gigascience/giz128 }}</ref>)
** ''[[Pieris rapae]]'', small cabbage white butterfly (2016<ref>{{cite journal | vauthors = Shen J, Cong Q, Kinch LN, Borek D, Otwinowski Z, Grishin NV | title = Pieris rapae, a resilient alien, a cabbage pest, and a source of anti-cancer proteins | journal = F1000Research | volume = 5 | pages = 2631 | date = 2016-11-03 | pmid = 28163896 | pmc = 5247789 | doi = 10.12688/f1000research.9765.1 }}</ref>)
** ''[[Plutella xylostella]]'', [[moth]] ([[diamondback moth]]) (2013<ref>{{cite journal | vauthors = You M, Yue Z, He W, Yang X, Yang G, Xie M, Zhan D, Baxter SW, Vasseur L, Gurr GM, Douglas CJ, Bai J, Wang P, Cui K, Huang S, Li X, Zhou Q, Wu Z, Chen Q, Liu C, Wang B, Li X, Xu X, Lu C, Hu M, Davey JW, Smith SM, Chen M, Xia X, Tang W, Ke F, Zheng D, Hu Y, Song F, You Y, Ma X, Peng L, Zheng Y, Liang Y, Chen Y, Yu L, Zhang Y, Liu Y, Li G, Fang L, Li J, Zhou X, Luo Y, Gou C, Wang J, Wang J, Yang H, Wang J | s2cid = 645600 | display-authors = 6 | title = A heterozygous moth genome provides insights into herbivory and detoxification | journal = Nature Genetics | volume = 45 | issue = 2 | pages = 220–5 | date = February 2013 | pmid = 23313953 | doi = 10.1038/ng.2524 }}</ref>)
** ''[[Spodoptera frugiperda]]'', [[Fall armyworm]] (2017<ref>{{cite journal | vauthors = Gouin A, Bretaudeau A, Nam K, Gimenez S, Aury JM, Duvic B, Hilliou F, Durand N, Montagné N, Darboux I, Kuwar S, Chertemps T, Siaussat D, Bretschneider A, Moné Y, Ahn SJ, Hänniger S, Grenet AG, Neunemann D, Maumus F, Luyten I, Labadie K, Xu W, Koutroumpa F, Escoubas JM, Llopis A, Maïbèche-Coisne M, Salasc F, Tomar A, Anderson AR, Khan SA, Dumas P, Orsucci M, Guy J, Belser C, Alberti A, Noel B, Couloux A, Mercier J, Nidelet S, Dubois E, Liu NY, Boulogne I, Mirabeau O, Le Goff G, Gordon K, Oakeshott J, Consoli FL, Volkoff AN, Fescemyer HW, Marden JH, Luthe DS, Herrero S, Heckel DG, Wincker P, Kergoat GJ, Amselem J, Quesneville H, Groot AT, Jacquin-Joly E, Nègre N, Lemaitre C, Legeai F, d'Alençon E, Fournier P | display-authors = 6 | title = Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges | journal = Scientific Reports | volume = 7 | issue = 1 | pages = 11816 | date = September 2017 | pmid = 28947760 | pmc = 5613006 | doi = 10.1038/s41598-017-10461-4 | bibcode = 2017NatSR...711816G }}</ref><ref>{{cite journal | vauthors = Kakumani PK, Malhotra P, Mukherjee SK, Bhatnagar RK | title = A draft genome assembly of the army worm, Spodoptera frugiperda | journal = Genomics | volume = 104 | issue = 2 | pages = 134–43 | date = August 2014 | pmid = 24984256 | doi = 10.1016/j.ygeno.2014.06.005 }}</ref>)
** ''[[Eudocima phalonia]]'', [[fruit-piercing moth]] (2017<ref>{{cite journal | vauthors = Sivasankaran K, Mathew P, Anand S, Ceasar SA, Mariapackiam S, Ignacimuthu S | title = Complete mitochondrial genome sequence of fruit-piercing moth <i>Eudocima phalonia</i> (Linnaeus, 1763) (Lepidoptera: Noctuoidea) | journal = Genomics Data | volume = 14 | pages = 66–81 | date = December 2017 | pmid = 29021958 | pmc = 5633087 | doi = 10.1016/j.gdata.2017.09.004 | doi-access = free }}</ref>)
* Order [[Orthoptera]]
** ''[[Locusta migratoria]]'', [[migratory locust]] (2014<ref>{{cite journal | vauthors = Wang X, Fang X, Yang P, Jiang X, Jiang F, Zhao D, Li B, Cui F, Wei J, Ma C, Wang Y, He J, Luo Y, Wang Z, Guo X, Guo W, Wang X, Zhang Y, Yang M, Hao S, Chen B, Ma Z, Yu D, Xiong Z, Zhu Y, Fan D, Han L, Wang B, Chen Y, Wang J, Yang L, Zhao W, Feng Y, Chen G, Lian J, Li Q, Huang Z, Yao X, Lv N, Zhang G, Li Y, Wang J, Wang J, Zhu B, Kang L | display-authors = 6 | title = The locust genome provides insight into swarm formation and long-distance flight | journal = Nature Communications | volume = 5 | issue = 1 | pages = 2957 | date = 14 January 2014 | pmid = 24423660 | pmc = 3896762 | doi = 10.1038/ncomms3957 | bibcode = 2014NatCo...5.2957W | doi-access = free }}</ref>)
** ''[[Schistocerca gregaria]]'', [[desert locust]] (2020<ref>{{cite journal | vauthors = Verlinden H, Sterck L, Li J, Li Z, Yssel A, Gansemans Y, Verdonck R, Holtof M, Song H, Behmer ST, Sword GA, Matheson T, Ott SR, Deforce D, Van Nieuwerburgh F, Van de Peer Y, Vanden Broeck J | display-authors = 6 | title = First draft genome assembly of the desert locust, Schistocerca gregaria | journal = F1000Research | volume = 9 | pages = 775 | date = 27 July 2020 | doi = 10.12688/f1000research.25148.1 | pmid = 33163158 | pmc = 7607483 | doi-access = free }}</ref>)
* Order [[Phthiraptera]]
** ''[[Pediculus humanus]]'', [[louse]] ([[sucking louse]]; parasite) (2010<ref>{{cite journal | vauthors = Kirkness EF, Haas BJ, Sun W, Braig HR, Perotti MA, Clark JM, Lee SH, Robertson HM, Kennedy RC, Elhaik E, Gerlach D, Kriventseva EV, Elsik CG, Graur D, Hill CA, Veenstra JA, Walenz B, Tubío JM, Ribeiro JM, Rozas J, Johnston JS, Reese JT, Popadic A, Tojo M, Raoult D, Reed DL, Tomoyasu Y, Kraus E, Krause E, Mittapalli O, Margam VM, Li HM, Meyer JM, Johnson RM, Romero-Severson J, Vanzee JP, Alvarez-Ponce D, Vieira FG, Aguadé M, Guirao-Rico S, Anzola JM, Yoon KS, Strycharz JP, Unger MF, Christley S, Lobo NF, Seufferheld MJ, Wang N, Dasch GA, Struchiner CJ, Madey G, Hannick LI, Bidwell S, Joardar V, Caler E, Shao R, Barker SC, Cameron S, Bruggner RV, Regier A, Johnson J, Viswanathan L, Utterback TR, Sutton GG, Lawson D, Waterhouse RM, Venter JC, Strausberg RL, Berenbaum MR, Collins FH, Zdobnov EM, Pittendrigh BR | display-authors = 6 | title = Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle | journal = Proceedings of the National Academy of Sciences of the United States of America | volume = 107 | issue = 27 | pages = 12168–73 | date = July 2010 | pmid = 20566863 | pmc = 2901460 | doi = 10.1073/pnas.1003379107 | bibcode = 2010PNAS..10712168K }}</ref>)
* Order [[Caddisfly|Trichoptera]]
** ''[[Stenopsyche tienmushanensis|Stenopsyche tienmushanensi]]''s, [[Caddisfly]] (2018<ref>{{cite journal | vauthors = Luo S, Tang M, Frandsen PB, Stewart RJ, Zhou X | title = The genome of an underwater architect, the caddisfly Stenopsyche tienmushanensis Hwang (Insecta: Trichoptera) | journal = GigaScience | volume = 7 | issue = 12 | date = December 2018 | pmid = 30476205 | pmc = 6302954 | doi = 10.1093/gigascience/giy143 }}</ref>)

===Crustaceans===
* ''[[Acartia tonsa dana]]'', [[cosmopolitan calanoid copepod]] (2019<ref>{{cite journal | vauthors = Jørgensen TS, Petersen B, Petersen HC, Browne PD, Prost S, Stillman JH, Hansen LH, Hansen BW | display-authors = 6 | title = The Genome and mRNA Transcriptome of the Cosmopolitan Calanoid Copepod Acartia tonsa Dana Improve the Understanding of Copepod Genome Size Evolution | journal = Genome Biology and Evolution | volume = 11 | issue = 5 | pages = 1440–1450 | date = May 2019 | pmid = 30918947 | pmc = 6526698 | doi = 10.1093/gbe/evz067 }}</ref>)
* ''[[Daphnia pulex]]'', [[water flea]] (2007<ref>{{cite web | title = The Daphnia Genomics Consortium | url = http://daphnia.cgb.indiana.edu/ | archive-url = https://web.archive.org/web/20100109090259/http://daphnia.cgb.indiana.edu/# | archive-date = 2010-01-09 | access-date = 2012-05-23 | url-status = dead }}</ref><ref>{{cite web |url=http://genome.jgi-psf.org/Dappu1/Dappu1.home.html |title=''Daphnia pulex'' v1.0 |publisher=[[DOE Joint Genome Institute]] |access-date=2009-11-29}}</ref><ref>{{cite journal | vauthors = Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, Detter JC, Dong Q, Dusheyko S, Eads BD, Fröhlich T, Geiler-Samerotte KA, Gerlach D, Hatcher P, Jogdeo S, Krijgsveld J, Kriventseva EV, Kültz D, Laforsch C, Lindquist E, Lopez J, Manak JR, Muller J, Pangilinan J, Patwardhan RP, Pitluck S, Pritham EJ, Rechtsteiner A, Rho M, Rogozin IB, Sakarya O, Salamov A, Schaack S, Shapiro H, Shiga Y, Skalitzky C, Smith Z, Souvorov A, Sung W, Tang Z, Tsuchiya D, Tu H, Vos H, Wang M, Wolf YI, Yamagata H, Yamada T, Ye Y, Shaw JR, Andrews J, Crease TJ, Tang H, Lucas SM, Robertson HM, Bork P, Koonin EV, Zdobnov EM, Grigoriev IV, Lynch M, Boore JL | display-authors = 6 | title = The ecoresponsive genome of Daphnia pulex | journal = Science | volume = 331 | issue = 6017 | pages = 555–61 | date = February 2011 | pmid = 21292972 | pmc = 3529199 | doi = 10.1126/science.1197761 | bibcode = 2011Sci...331..555C }}</ref>)
* ''[[Eulimnadia texana|Eulimnadia Texana]]'', Clam Shrimp (2018<ref>{{cite journal | vauthors = Baldwin-Brown JG, Weeks SC, Long AD | title = A New Standard for Crustacean Genomes: The Highly Contiguous, Annotated Genome Assembly of the Clam Shrimp Eulimnadia texana Reveals HOX Gene Order and Identifies the Sex Chromosome | journal = Genome Biology and Evolution | volume = 10 | issue = 1 | pages = 143–156 | date = January 2018 | pmid = 29294012 | doi = 10.1093/gbe/evx280 | pmc = 5765565 }}</ref>)
*''[[Macrobrachium nipponense]]'', oriental river prawn (2021<ref>{{cite journal | vauthors = Jin S, Bian C, Jiang S, Han K, Xiong Y, Zhang W, Shi C, Qiao H, Gao Z, Li R, Huang Y, Gong Y, You X, Fan G, Shi Q, Fu H | display-authors = 6 | title = A chromosome-level genome assembly of the oriental river prawn, Macrobrachium nipponense | journal = GigaScience | volume = 10 | issue = 1 | date = January 2021 | pmid = 33459341 | pmc = 7812440 | doi = 10.1093/gigascience/giaa160 }}</ref>)
* ''[[Neocaridina denticulata]]'', [[shrimp]] (2014<ref>{{cite journal | vauthors = Kenny NJ, Sin YW, Shen X, Zhe Q, Wang W, Chan TF, Tobe SS, Shimeld SM, Chu KH, Hui JH | display-authors = 6 | title = Genomic sequence and experimental tractability of a new decapod shrimp model, Neocaridina denticulata | journal = Marine Drugs | volume = 12 | issue = 3 | pages = 1419–37 | date = March 2014 | pmid = 24619275 | pmc = 3967219 | doi = 10.3390/md12031419 }}</ref>)
* ''[[Parhyale hawaiensis]]'', [[amphipod]] (2016<ref>{{cite journal | vauthors = Kao D, Lai AG, Stamataki E, Rosic S, Konstantinides N, Jarvis E, Di Donfrancesco A, Pouchkina-Stancheva N, Sémon M, Grillo M, Bruce H, Kumar S, Siwanowicz I, Le A, Lemire A, Eisen MB, Extavour C, Browne WE, Wolff C, Averof M, Patel NH, Sarkies P, Pavlopoulos A, Aboobaker A | display-authors = 6 | title = Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion | journal = eLife | volume = 5 | pages = e20062 | date = November 2016 | pmid = 27849518 | pmc = 5111886 | doi = 10.7554/eLife.20062 }}</ref>)
* ''[[Portunus trituberculatus]]'', swimming crab (2020<ref>{{cite journal | vauthors = Tang B, Zhang D, Li H, Jiang S, Zhang H, Xuan F, Ge B, Wang Z, Liu Y, Sha Z, Cheng Y, Jiang W, Jiang H, Wang Z, Wang K, Li C, Sun Y, She S, Qiu Q, Wang W, Li X, Li Y, Liu Q, Ren Y | display-authors = 6 | title = Chromosome-level genome assembly reveals the unique genome evolution of the swimming crab (Portunus trituberculatus) | journal = GigaScience | volume = 9 | issue = 1 | date = January 2020 | pmid = 31904811 | pmc = 6944217 | doi = 10.1093/gigascience/giz161 }}</ref>)
* ''[[Procambarus virginalis]]'', [[marbled crayfish]] (2018<ref>{{cite journal | vauthors = Gutekunst J, Andriantsoa R, Falckenhayn C, Hanna K, Stein W, Rasamy J, Lyko F | s2cid = 3354026 | title = Clonal genome evolution and rapid invasive spread of the marbled crayfish | journal = Nature Ecology & Evolution | volume = 2 | issue = 3 | pages = 567–573 | date = March 2018 | pmid = 29403072 | doi = 10.1038/s41559-018-0467-9 }}</ref>)
* ''[[Tigriopus kingsejongensis]]'', [[antarctic-endemic copepod]] (2017<ref>{{cite journal | vauthors = Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H | display-authors = 6 | title = The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis | journal = GigaScience | volume = 6 | issue = 1 | pages = 1–9 | date = January 2017 | pmid = 28369352 | pmc = 5467011 | doi = 10.1093/gigascience/giw010 }}</ref>)

===Chelicerates===
* ''[[Limulus polyphemus]]'', [[Atlantic horseshoe crab]] (2014)<ref>{{cite journal | vauthors = Nossa CW, Havlak P, Yue JX, Lv J, Vincent KY, Brockmann HJ, Putnam NH | display-authors = 6 | title = Joint assembly and genetic mapping of the Atlantic horseshoe crab genome reveals ancient whole genome duplication | journal = GigaScience | volume = 3 | pages = 9 | year = 2014 | pmid = 24987520 | pmc = 4066314 | doi = 10.1186/2047-217X-3-9 }}</ref>
* ''[[Carcinoscorpius rotundicauda]]'', [[mangrove horseshoe crab]] (2020)<ref>{{cite journal | vauthors = Shingate P, Ravi V, Prasad A, Tay BH, Garg KM, Chattopadhyay B, Yap LM, Rheindt FE, Venkatesh B | display-authors = 6 | title = Chromosome-level assembly of the horseshoe crab genome provides insights into its genome evolution | journal = Nature Communications | volume = 11 | issue = 1 | pages = 2322 | date = May 2020 | pmid = 32385269 | pmc = 7210998 | doi = 10.1038/s41467-020-16180-1 | bibcode = 2020NatCo..11.2322S }}</ref>

Of which Arachnids:
* ''[[Acanthoscurria geniculata]]'', [[Brazilian whiteknee tarantula]] (2014<ref name="Sanggaard2014"/>)
*''[[Argiope bruennichi]],'' European wasp spider (2021<ref>{{cite journal | vauthors = Sheffer MM, Hoppe A, Krehenwinkel H, Uhl G, Kuss AW, Jensen L, Jensen C, Gillespie RG, Hoff KJ, Prost S | display-authors = 6 | title = Chromosome-level reference genome of the European wasp spider Argiope bruennichi: a resource for studies on range expansion and evolutionary adaptation | journal = GigaScience | volume = 10 | issue = 1 | date = January 2021 | pmid = 33410470 | pmc = 7788392 | doi = 10.1093/gigascience/giaa148 }}</ref>)
* ''[[Dysdera|Dysdera silvatica]]'', Canary Island nocturnal endemic woodlouse spider (2019<ref>{{cite journal | vauthors = Sánchez-Herrero JF, Frías-López C, Escuer P, Hinojosa-Alvarez S, Arnedo MA, Sánchez-Gracia A, Rozas J | title = The draft genome sequence of the spider Dysdera silvatica (Araneae, Dysderidae): A valuable resource for functional and evolutionary genomic studies in chelicerates | journal = GigaScience | volume = 8 | issue = 8 | date = August 2019 | pmid = 31430368 | pmc = 6701490 | doi = 10.1093/gigascience/giz099 }}</ref>)
* ''[[Ixodes scapularis]]'', (deer [[tick]]) (2016<ref>{{cite journal | vauthors = Gulia-Nuss M, Nuss AB, Meyer JM, Sonenshine DE, Roe RM, Waterhouse RM, Sattelle DB, de la Fuente J, Ribeiro JM, Megy K, Thimmapuram J, Miller JR, Walenz BP, Koren S, Hostetler JB, Thiagarajan M, Joardar VS, Hannick LI, Bidwell S, Hammond MP, Young S, Zeng Q, Abrudan JL, Almeida FC, Ayllón N, Bhide K, Bissinger BW, Bonzon-Kulichenko E, Buckingham SD, Caffrey DR, Caimano MJ, Croset V, Driscoll T, Gilbert D, Gillespie JJ, Giraldo-Calderón GI, Grabowski JM, Jiang D, Khalil SM, Kim D, Kocan KM, Koči J, Kuhn RJ, Kurtti TJ, Lees K, Lang EG, Kennedy RC, Kwon H, Perera R, Qi Y, Radolf JD, Sakamoto JM, Sánchez-Gracia A, Severo MS, Silverman N, Šimo L, Tojo M, Tornador C, Van Zee JP, Vázquez J, Vieira FG, Villar M, Wespiser AR, Yang Y, Zhu J, Arensburger P, Pietrantonio PV, Barker SC, Shao R, Zdobnov EM, Hauser F, Grimmelikhuijzen CJ, Park Y, Rozas J, Benton R, Pedra JH, Nelson DR, Unger MF, Tubio JM, Tu Z, Robertson HM, Shumway M, Sutton G, Wortman JR, Lawson D, Wikel SK, Nene VM, Fraser CM, Collins FH, Birren B, Nelson KE, CalerE, Hilla CA | display-authors = 6 | title = Genomic insights into the Ixodes scapularis tick vector of Lyme disease | journal = Nature Communications | volume = 7 | pages = 10507 | date = February 2016 | pmid = 26856261 | pmc = 4748124 | doi = 10.1038/ncomms10507 | bibcode = 2016NatCo...710507G }}</ref>)
* ''[[Mesobuthus martensii]]'', [[Chinese scorpion]] (2013<ref>{{cite journal | vauthors = Cao Z, Yu Y, Wu Y, Hao P, Di Z, He Y, Chen Z, Yang W, Shen Z, He X, Sheng J, Xu X, Pan B, Feng J, Yang X, Hong W, Zhao W, Li Z, Huang K, Li T, Kong Y, Liu H, Jiang D, Zhang B, Hu J, Hu Y, Wang B, Dai J, Yuan B, Feng Y, Huang W, Xing X, Zhao G, Li X, Li Y, Li W | display-authors = 6 | title = The genome of Mesobuthus martensii reveals a unique adaptation model of arthropods | journal = Nature Communications | volume = 4 | pages = 2602 | year = 2013 | pmid = 24129506 | pmc = 3826648 | doi = 10.1038/ncomms3602 | bibcode = 2013NatCo...4.2602C }}</ref>)
* ''[[Nephila clavipes]]'', (golden silk orb-weaver) (2017<ref>{{cite journal | vauthors = Babb PL, Lahens NF, Correa-Garhwal SM, Nicholson DN, Kim EJ, Hogenesch JB, Kuntner M, Higgins L, Hayashi CY, Agnarsson I, Voight BF | s2cid = 1221097 | display-authors = 6 | title = The Nephila clavipes genome highlights the diversity of spider silk genes and their complex expression. | journal = Nature Genetics | volume = 49 | issue = 6 | pages = 895–903 | date = May 2017 | pmid = 28459453 | doi = 10.1038/ng.3852 }}</ref>)
* ''[[Parasteatoda tepidariorum]]'', (common house spider) (2017<ref>{{cite journal | vauthors = Schwager EE, Sharma PP, Clarke T, Leite DJ, Wierschin T, Pechmann M, Akiyama-Oda Y, Esposito L, Bechsgaard J, Bilde T, Buffry AD, Chao H, Dinh H, Doddapaneni H, Dugan S, Eibner C, Extavour CG, Funch P, Garb J, Gonzalez LB, Gonzalez VL, Griffiths-Jones S, Han Y, Hayashi C, Hilbrant M, Hughes DS, Janssen R, Lee SL, Maeso I, Murali SC, Muzny DM, Nunes da Fonseca R, Paese CL, Qu J, Ronshaugen M, Schomburg C, Schönauer A, Stollewerk A, Torres-Oliva M, Turetzek N, Vanthournout B, Werren JH, Wolff C, Worley KC, Bucher G, Gibbs RA, Coddington J, Oda H, Stanke M, Ayoub NA, Prpic NM, Flot JF, Posnien N, Richards S, McGregor AP | display-authors = 6 | title = The house spider genome reveals an ancient whole-genome duplication during arachnid evolution | journal = BMC Biology | volume = 15 | issue = 1| pages = 62 | date = July 2017 | pmid = 28756775 | pmc = 5535294 | doi = 10.1186/s12915-017-0399-x }}</ref>)
* ''[[Stegodyphus mimosarum]]'', [[African social velvet spider]] (2014<ref name="Sanggaard2014">{{cite journal | vauthors = Sanggaard KW, Bechsgaard JS, Fang X, Duan J, Dyrlund TF, Gupta V, Jiang X, Cheng L, Fan D, Feng Y, Han L, Huang Z, Wu Z, Liao L, Settepani V, Thøgersen IB, Vanthournout B, Wang T, Zhu Y, Funch P, Enghild JJ, Schauser L, Andersen SU, Villesen P, Schierup MH, Bilde T, Wang J | display-authors = 6 | title = Spider genomes provide insight into composition and evolution of venom and silk | journal = Nature Communications | volume = 5 | pages = 3765 | date = May 2014 | pmid = 24801114 | pmc = 4273655 | doi = 10.1038/ncomms4765 | bibcode = 2014NatCo...5.3765S }}</ref>)
* ''[[Tetranychus urticae]]'', spider [[mite]] (2011<ref>{{cite journal | vauthors = Grbić M, Van Leeuwen T, Clark RM, Rombauts S, Rouzé P, Grbić V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernández-Crespo P, Diaz I, Martinez M, Navajas M, Sucena É, Magalhães S, Nagy L, Pace RM, Djuranović S, Smagghe G, Iga M, Christiaens O, Veenstra JA, Ewer J, Villalobos RM, Hutter JL, Hudson SD, Velez M, Yi SV, Zeng J, Pires-daSilva A, Roch F, Cazaux M, Navarro M, Zhurov V, Acevedo G, Bjelica A, Fawcett JA, Bonnet E, Martens C, Baele G, Wissler L, Sanchez-Rodriguez A, Tirry L, Blais C, Demeestere K, Henz SR, Gregory TR, Mathieu J, Verdon L, Farinelli L, Schmutz J, Lindquist E, Feyereisen R, Van de Peer Y | display-authors = 6 | title = The genome of Tetranychus urticae reveals herbivorous pest adaptations | journal = Nature | volume = 479 | issue = 7374 | pages = 487–92 | date = November 2011 | pmid = 22113690 | pmc = 4856440 | doi = 10.1038/nature10640 | bibcode = 2011Natur.479..487G }}</ref>)
* ''[[Tropilaelaps mercedesae]]'', (honeybee mite) (2017<ref>{{cite journal | vauthors = Dong X, Armstrong SD, Xia D, Makepeace BL, Darby AC, Kadowaki T | title = Draft genome of the honey bee ectoparasitic mite, ''Tropilaelaps mercedesae'', is shaped by the parasitic life history | journal = Gigascience | volume = 6| issue = 3| pages = 1–17| date = 1 March 2017 | pmid = 28327890 | pmc = 5467014 | doi = 10.1093/gigascience/gix008 }}</ref>)

===Myriapoda===
* ''[[Strigamia maritima]]'', [[centipede]]<ref>{{cite journal | vauthors = Chipman AD, Ferrier DE, Brena C, Qu J, Hughes DS, Schröder R, Torres-Oliva M, Znassi N, Jiang H, Almeida FC, Alonso CR, Apostolou Z, Aqrawi P, Arthur W, Barna JC, Blankenburg KP, Brites D, Capella-Gutiérrez S, Coyle M, Dearden PK, Du Pasquier L, Duncan EJ, Ebert D, Eibner C, Erikson G, Evans PD, Extavour CG, Francisco L, Gabaldón T, Gillis WJ, Goodwin-Horn EA, Green JE, Griffiths-Jones S, Grimmelikhuijzen CJ, Gubbala S, Guigó R, Han Y, Hauser F, Havlak P, Hayden L, Helbing S, Holder M, Hui JH, Hunn JP, Hunnekuhl VS, Jackson L, Javaid M, Jhangiani SN, Jiggins FM, Jones TE, Kaiser TS, Kalra D, Kenny NJ, Korchina V, Kovar CL, Kraus FB, Lapraz F, Lee SL, Lv J, Mandapat C, Manning G, Mariotti M, Mata R, Mathew T, Neumann T, Newsham I, Ngo DN, Ninova M, Okwuonu G, Ongeri F, Palmer WJ, Patil S, Patraquim P, Pham C, Pu LL, Putman NH, Rabouille C, Ramos OM, Rhodes AC, Robertson HE, Robertson HM, Ronshaugen M, Rozas J, Saada N, Sánchez-Gracia A, Scherer SE, Schurko AM, Siggens KW, Simmons D, Stief A, Stolle E, Telford MJ, Tessmar-Raible K, Thornton R, van der Zee M, von Haeseler A, Williams JM, Willis JH, Wu Y, Zou X, Lawson D, Muzny DM, Worley KC, Gibbs RA, Akam M, Richards S | display-authors = 6 | title = The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima | journal = PLOS Biology | volume = 12 | issue = 11 | pages = e1002005 | date = November 2014 | pmid = 25423365 | pmc = 4244043 | doi = 10.1371/journal.pbio.1002005 }}</ref>

===Tardigrades===
* ''[[Hypsibius dujardini]]'', water bear (2015<ref name="BoothbyTenlen2015">{{cite journal | vauthors = Boothby TC, Tenlen JR, Smith FW, Wang JR, Patanella KA, Nishimura EO, Tintori SC, Li Q, Jones CD, Yandell M, Messina DN, Glasscock J, Goldstein B | display-authors = 6 | title = Evidence for extensive horizontal gene transfer from the draft genome of a tardigrade | journal = Proceedings of the National Academy of Sciences of the United States of America | volume = 112 | issue = 52 | pages = 15976–81 | date = December 2015 | pmid = 26598659 | pmc = 4702960 | doi = 10.1073/pnas.1510461112 | bibcode = 2015PNAS..11215976B }}</ref><ref name="KoutsovoulosKumar2015">{{cite biorxiv|last1=Koutsovoulos|first1=Georgios|last2=Kumar|first2=Sujai|last3=Laetsch|first3=Dominik R|last4=Stevens|first4=Lewis|last5=Daub|first5=Jennifer|last6=Conlon|first6=Claire|last7=Maroon|first7=Habib|last8=Thomas|first8=Fran|last9=Aboobaker |first9=Aziz|last10=Blaxter|first10=Mark | name-list-style = vanc |title=The genome of the tardigrade Hypsibius dujardini|year=2015|biorxiv=10.1101/033464}}</ref>)

===Molluscs===
* ''[[Acanthopleura granulata]]'', [[chiton]] (2020<ref>{{cite journal | vauthors = Varney RM, Speiser DI, McDougall C, Degnan BM, Kocot KM | title = The iron-responsive genome of the chiton Acanthopleura Granulata | journal = Genome Biology and Evolution | volume = evaa263 | date = December 2020 | pmid = 33320175 | doi = 10.1093/gbe/evaa263 | pmc = 7850002 }}</ref>)
*''[[Achatina fulica]]'', giant African snail (2019<ref>{{cite journal | vauthors = Guo Y, Zhang Y, Liu Q, Huang Y, Mao G, Yue Z, Abe EM, Li J, Wu Z, Li S, Zhou X, Hu W, Xiao N | display-authors = 6 | title = A chromosomal-level genome assembly for the giant African snail Achatina fulica | journal = GigaScience | volume = 8 | issue = 10 | date = October 2019 | pmid = 31634388 | pmc = 6802634 | doi = 10.1093/gigascience/giz124 }}</ref>)
* ''[[Giant squid|Architeuthis dux]]'', giant squid (2020<ref>{{Cite journal| vauthors = Brejova B, Albertin CB, Silva F, Gardner P, Baril T, Hayward A, Campos A, Ribiero A, Barrio Hernandez I, Hoving HJ, Tafur-Jiminez R | display-authors = 6 |date=2020-01-01|title=A draft genome sequence of the elusive giant squid, Architeuthis dux |journal=GigaScience | volume=9|issue=1|doi=10.1093/gigascience/giz152| pmid = 31942620 | pmc = 6962438 }}</ref>)
* ''[[Argopecten purpuratus]]'', [[peruvian scallop]] (2018<ref>{{cite journal | vauthors = Li C, Liu X, Liu B, Ma B, Liu F, Liu G, Shi Q, Wang C | display-authors = 6 | title = Draft genome of the Peruvian scallop Argopecten purpuratus | journal = GigaScience | volume = 7 | issue = 4 | date = April 2018 | pmid = 29617765 | pmc = 5905365 | doi = 10.1093/gigascience/giy031 }}</ref>)
* ''[[Bathymodiolus platifrons]]'', seep mussel (2017<ref name="Adaptation to deep-sea chemosynthet">{{cite journal | vauthors = Sun J, Zhang Y, Xu T, Zhang Y, Mu H, Zhang Y, Lan Y, Fields CJ, Hui JH, Zhang W, Li R, Nong W, Cheung FK, Qiu JW, Qian PY | s2cid = 26405671 | display-authors = 6 | title = Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | journal = Nature Ecology & Evolution | volume = 1 | issue = 5 | pages = 121 | date = April 2017 | pmid = 28812709 | doi = 10.1038/s41559-017-0121 }}</ref>
* ''[[Biomphalaria glabrata]]'', a medically-important air-breathing freshwater snail in the family [[Planorbidae]] (2017<ref name="AdemaHillier2017">{{cite journal | vauthors = Adema CM, Hillier LW, Jones CS, Loker ES, Knight M, Minx P, Oliveira G, Raghavan N, Shedlock A, do Amaral LR, Arican-Goktas HD, Assis JG, Baba EH, Baron OL, Bayne CJ, Bickham-Wright U, Biggar KK, Blouin M, Bonning BC, Botka C, Bridger JM, Buckley KM, Buddenborg SK, Lima Caldeira R, Carleton J, Carvalho OS, Castillo MG, Chalmers IW, Christensens M, Clifton S, Cosseau C, Coustau C, Cripps RM, Cuesta-Astroz Y, Cummins SF, di Stephano L, Dinguirard N, Duval D, Emrich S, Feschotte C, Feyereisen R, FitzGerald P, Fronick C, Fulton L, Galinier R, Gava SG, Geusz M, Geyer KK, Giraldo-Calderón GI, de Souza Gomes M, Gordy MA, Gourbal B, Grunau C, Hanington PC, Hoffmann KF, Hughes D, Humphries J, Jackson DJ, Jannotti-Passos LK, de Jesus Jeremias W, Jobling S, Kamel B, Kapusta A, Kaur S, Koene JM, Kohn AB, Lawson D, Lawton SP, Liang D, Limpanont Y, Liu S, Lockyer AE, Lovato TL, Ludolf F, Magrini V, McManus DP, Medina M, Misra M, Mitta G, Mkoji GM, Montague MJ, Montelongo C, Moroz LL, Munoz-Torres MC, Niazi U, Noble LR, Oliveira FS, Pais FS, Papenfuss AT, Peace R, Pena JJ, Pila EA, Quelais T, Raney BJ, Rast JP, Rollinson D, Rosse IC, Rotgans B, Routledge EJ, Ryan KM, Scholte LL, Storey KB, Swain M, Tennessen JA, Tomlinson C, Trujillo DL, Volpi EV, Walker AJ, Wang T, Wannaporn I, Warren WC, Wu XJ, Yoshino TP, Yusuf M, Zhang SM, Zhao M, Wilson RK | display-authors = 6 | title = Whole genome analysis of a schistosomiasis-transmitting freshwater snail | journal = Nature Communications | volume = 8 | pages = 15451 | date = May 2017 | pmid = 28508897 | pmc = 5440852 | doi = 10.1038/ncomms15451 | bibcode = 2017NatCo...815451A }}</ref>)
* ''[[Farrer's scallop|Chlamys farreri]]'', Zhikong scallop (2017<ref>{{cite journal | vauthors = Li Y, Sun X, Hu X, Xun X, Zhang J, Guo X, Jiao W, Zhang L, Liu W, Wang J, Li J, Sun Y, Miao Y, Zhang X, Cheng T, Xu G, Fu X, Wang Y, Yu X, Huang X, Lu W, Lv J, Mu C, Wang D, Li X, Xia Y, Li Y, Yang Z, Wang F, Zhang L, Xing Q, Dou H, Ning X, Dou J, Li Y, Kong D, Liu Y, Jiang Z, Li R, Wang S, Bao Z | display-authors = 6 | title = Scallop genome reveals molecular adaptations to semi-sessile life and neurotoxins | journal = Nature Communications | volume = 8 | issue = 1 | pages = 1721 | date = November 2017 | pmid = 29167427 | pmc = 5700196 | doi = 10.1038/s41467-017-01927-0 | bibcode = 2017NatCo...8.1721L }}</ref>)
* ''[[Crassostrea gigas]]'', Pacific [[oyster]] (2012<ref>{{cite journal | vauthors = Zhang G, Fang X, Guo X, Li L, Luo R, Xu F, Yang P, Zhang L, Wang X, Qi H, Xiong Z, Que H, Xie Y, Holland PW, Paps J, Zhu Y, Wu F, Chen Y, Wang J, Peng C, Meng J, Yang L, Liu J, Wen B, Zhang N, Huang Z, Zhu Q, Feng Y, Mount A, Hedgecock D, Xu Z, Liu Y, Domazet-Lošo T, Du Y, Sun X, Zhang S, Liu B, Cheng P, Jiang X, Li J, Fan D, Wang W, Fu W, Wang T, Wang B, Zhang J, Peng Z, Li Y, Li N, Wang J, Chen M, He Y, Tan F, Song X, Zheng Q, Huang R, Yang H, Du X, Chen L, Yang M, Gaffney PM, Wang S, Luo L, She Z, Ming Y, Huang W, Zhang S, Huang B, Zhang Y, Qu T, Ni P, Miao G, Wang J, Wang Q, Steinberg CE, Wang H, Li N, Qian L, Zhang G, Li Y, Yang H, Liu X, Wang J, Yin Y, Wang J | s2cid = 52853995 | display-authors = 6 | title = The oyster genome reveals stress adaptation and complexity of shell formation | journal = Nature | volume = 490 | issue = 7418 | pages = 49–54 | date = October 2012 | pmid = 22992520 | doi = 10.1038/nature11413 | bibcode = 2012Natur.490...49Z | hdl = 10722/251007 }}</ref>)
* ''[[Dreissena rostriformis]]'', Quagga mussel (2019<ref>{{cite journal | vauthors = Calcino AD, Luiz de Oliveira A, Simakov O, Schwaha T, Zieger E, Wollesen T, Wanninger A | display-authors = 6 | title = The quagga mussel genome and the evolution of freshwater tolerance | journal = DNA Research | volume = 26 | issue = 5 | date = October 2019 | pages = 411–422 | pmid = 31504356 | pmc = 6796509 | doi = 10.1093/dnares/dsz019 }}</ref>)
* ''[[Euprymna scolopes]]'', Hawaiian bobtail squid (2019<ref>{{cite journal | vauthors = Belcaid M, Casaburi G, McAnulty SJ, Schmidbaur H, Suria AM, Moriano-Gutierrez S, Pankey MS, Oakley TH, Kremer N, Koch EJ, Collins AJ, Nguyen H, Lek S, Goncharenko-Foster I, Minx P, Sodergren E, Weinstock G, Rokhsar DS, McFall-Ngai M, Simakov O, Foster JS, Nyholm SV | display-authors = 6 | title = Symbiotic organs shaped by distinct modes of genome evolution in cephalopods | journal = Proceedings of the National Academy of Sciences of the United States of America | volume = 116 | issue = 8 | pages = 3030–3035 | date = February 2019 | pmid = 30635418 | pmc = 6386654 | doi = 10.1073/pnas.1817322116 }}</ref>)
* ''[[Elysia chlorotica]]'', a solar-powered sea slug (2019<ref>{{cite journal | vauthors = Cai H, Li Q, Fang X, Li J, Curtis NE, Altenburger A, Shibata T, Feng M, Maeda T, Schwartz JA, Shigenobu S, Lundholm N, Nishiyama T, Yang H, Hasebe M, Li S, Pierce SK, Wang J | display-authors = 6 | title = A draft genome assembly of the solar-powered sea slug Elysia chlorotica | journal = Scientific Data | volume = 6 | pages = 190022 | date = February 2019 | pmid = 30778257 | pmc = 6380222 | doi = 10.1038/sdata.2019.22 | bibcode = 2019NatSD...690022C }}</ref>)
* ''[[Haliotis discus]] hannai'', pacific abalone (2017<ref>{{cite journal | vauthors = Nam BH, Kwak W, Kim YO, Kim DG, Kong HJ, Kim WJ, Kang JH, Park JY, An CM, Moon JY, Park CJ, Yu JW, Yoon J, Seo M, Kim K, Kim DK, Lee S, Sung S, Lee C, Shin Y, Jung M, Kang BC, Shin GH, Ka S, Caetano-Anolles K, Cho S, Kim H | display-authors = 6 | title = Genome sequence of pacific abalone (Haliotis discus hannai): the first draft genome in family Haliotidae | journal = GigaScience | volume = 6 | issue = 5 | pages = 1–8 | date = May 2017 | pmid = 28327967 | pmc = 5439488 | doi = 10.1093/gigascience/gix014 }}</ref>)
*''[[Southern blue-ringed octopus|Hapalochlaena maculosa]]'', Southern blue-ringed octopus (2020<ref>{{cite journal | vauthors = Whitelaw BL, Cooke IR, Finn J, da Fonseca RR, Ritschard EA, Gilbert MT, Simakov O, Strugnell JM | display-authors = 6 | title = Adaptive venom evolution and toxicity in octopods is driven by extensive novel gene formation, expansion, and loss | journal = GigaScience | volume = 9 | issue = 11 | date = November 2020 | pmid = 33175168 | pmc = 7656900 | doi = 10.1093/gigascience/giaa120 }}</ref>)
* ''[[Lottia gigantea]]'', owl [[limpet]] (2013<ref name="Simakov2013">{{cite journal | vauthors = Simakov O, Marletaz F, Cho SJ, Edsinger-Gonzales E, Havlak P, Hellsten U, Kuo DH, Larsson T, Lv J, Arendt D, Savage R, Osoegawa K, de Jong P, Grimwood J, Chapman JA, Shapiro H, Aerts A, Otillar RP, Terry AY, Boore JL, Grigoriev IV, Lindberg DR, Seaver EC, Weisblat DA, Putnam NH, Rokhsar DS | display-authors = 6 | title = Insights into bilaterian evolution from three spiralian genomes | journal = Nature | volume = 493 | issue = 7433 | pages = 526–31 | date = January 2013 | pmid = 23254933 | pmc = 4085046 | doi = 10.1038/nature11696 | bibcode = 2013Natur.493..526S }}</ref>)
* ''[[Limnoperna fortunei]]'', invasive golden mussel (2017<ref>{{cite journal | vauthors = Uliano-Silva M, Dondero F, Dan Otto T, Costa I, Lima NC, Americo JA, Mazzoni CJ, Prosdocimi F, Rebelo MF | display-authors = 6 | title = A hybrid-hierarchical genome assembly strategy to sequence the invasive golden mussel, Limnoperna fortunei | journal = GigaScience | volume = 7 | issue = 2 | date = February 2018 | pmid = 29267857 | pmc = 5836269 | doi = 10.1093/gigascience/gix128 }}</ref>)
* ''[[Modiolus philippinarum]]'', shallow water mussel (2017<ref name="Adaptation to deep-sea chemosynthet"/>)
* ''[[Mediterranean mussel|Mytilus galloprovincialis]]'', Mediterranean mussel (2016<ref>{{cite journal | vauthors = Murgarella M, Puiu D, Novoa B, Figueras A, Posada D, Canchaya C | title = A First Insight into the Genome of the Filter-Feeder Mussel Mytilus galloprovincialis | journal = PLOS ONE | volume = 11 | issue = 3 | pages = e0151561 | date = 2016-03-15 | pmid = 26977809 | pmc = 4792442 | doi = 10.1371/journal.pone.0151561 | bibcode = 2016PLoSO..1151561M }}</ref>)
* ''[[Octopus bimaculoides]]'', California two-spot octopus (2015<ref name="AlbertinSimakov2015">{{cite journal | vauthors = Albertin CB, Simakov O, Mitros T, Wang ZY, Pungor JR, Edsinger-Gonzales E, Brenner S, Ragsdale CW, Rokhsar DS | display-authors = 6 | title = The octopus genome and the evolution of cephalopod neural and morphological novelties | journal = Nature | volume = 524 | issue = 7564 | pages = 220–4 | date = August 2015 | pmid = 26268193 | pmc = 4795812 | doi = 10.1038/nature14668 | bibcode = 2015Natur.524..220A }}</ref>)
* ''[[Octopus minor]]'', [[common long-arm octopus]] ''(2018''<ref>{{cite journal | vauthors = Kim BM, Kang S, Ahn DH, Jung SH, Rhee H, Yoo JS, Lee JE, Lee S, Han YH, Ryu KB, Cho SJ, Park H, An HS | display-authors = 6 | title = The genome of common long-arm octopus Octopus minor | journal = GigaScience | volume = 7 | issue = 11 | date = November 2018 | pmid = 30256935 | pmc = 6279123 | doi = 10.1093/gigascience/giy119 }}</ref>
* ''[[Common octopus|Octopus vulgaris]]'', [[common octopus]] (2019<ref>{{cite journal | vauthors = Zarrella I, Herten K, Maes GE, Tai S, Yang M, Seuntjens E, Ritschard EA, Zach M, Styfhals R, Sanges R, Simakov O, Ponte G, Fiorito G | display-authors = 6 | title = The survey and reference assisted assembly of the Octopus vulgaris genome | journal = Scientific Data | volume = 6 | issue = 1 | pages = 13 | date = April 2019 | pmid = 30931949 | pmc = 6472339 | doi = 10.1038/s41597-019-0017-6 | bibcode = 2019NatSD...6...13Z }}</ref>)
* ''[[Mizuhopecten yessoensis|Patinopecten yessoensis]]'', Yesso scallop (2017<ref>{{cite journal | vauthors = Wang S, Zhang J, Jiao W, Li J, Xun X, Sun Y, Guo X, Huan P, Dong B, Zhang L, Hu X, Sun X, Wang J, Zhao C, Wang Y, Wang D, Huang X, Wang R, Lv J, Li Y, Zhang Z, Liu B, Lu W, Hui Y, Liang J, Zhou Z, Hou R, Li X, Liu Y, Li H, Ning X, Lin Y, Zhao L, Xing Q, Dou J, Li Y, Mao J, Guo H, Dou H, Li T, Mu C, Jiang W, Fu Q, Fu X, Miao Y, Liu J, Yu Q, Li R, Liao H, Li X, Kong Y, Jiang Z, Chourrout D, Li R, Bao Z | s2cid = 10331741 | display-authors = 6 | title = Scallop genome provides insights into evolution of bilaterian karyotype and development | journal = Nature Ecology & Evolution | volume = 1 | issue = 5 | pages = 120 | date = April 2017 | pmid = 28812685 | doi = 10.1038/s41559-017-0120 }}</ref>)
* ''[[Pecten maximus]]'', Great scallop (2020<ref>{{cite journal | vauthors = Kenny NJ, McCarthy SA, Dudchenko O, James K, Betteridge E, Corton C, Dolucan J, Mead D, Oliver K, Omer AD, Pelan S, Ryan Y, Sims Y, Skelton J, Smith M, Torrance J, Weisz D, Wipat A, Aiden EL, Howe K, Williams ST | display-authors = 6 | title = The gene-rich genome of the scallop Pecten maximus | journal = GigaScience | volume = 9 | issue = 5 | date = May 2020 | pmid = 32352532 | doi = 10.1093/gigascience/giaa037 | pmc = 7191990 }}</ref>)
* ''[[Pinctada fucata]]'', Pearl oyster (2012<ref>{{cite journal | vauthors = Takeuchi T, Kawashima T, Koyanagi R, Gyoja F, Tanaka M, Ikuta T, Shoguchi E, Fujiwara M, Shinzato C, Hisata K, Fujie M, Usami T, Nagai K, Maeyama K, Okamoto K, Aoki H, Ishikawa T, Masaoka T, Fujiwara A, Endo K, Endo H, Nagasawa H, Kinoshita S, Asakawa S, Watabe S, Satoh N | display-authors = 6 | title = Draft genome of the pearl oyster Pinctada fucata: a platform for understanding bivalve biology | journal = DNA Research | volume = 19 | issue = 2 | pages = 117–30 | date = April 2012 | pmid = 22315334 | pmc = 3325083 | doi = 10.1093/dnares/dss005 }}</ref>)
* ''[[Pomacea canaliculata]]'', [[Pomacea canaliculata|golden apple snail]] (2018<ref>{{cite journal | vauthors = Liu C, Zhang Y, Ren Y, Wang H, Li S, Jiang F, Yin L, Qiao X, Zhang G, Qian W, Liu B, Fan W | display-authors = 6 | title = The genome of the golden apple snail Pomacea canaliculata provides insight into stress tolerance and invasive adaptation | journal = GigaScience | volume = 7 | issue = 9 | date = September 2018 | pmid = 30107526 | pmc = 6129957 | doi = 10.1093/gigascience/giy101 }}</ref>)
* [[Venerupis philippinarum|''Ruditapes philippinarum'']], Manila clam (2017<ref>{{cite journal | vauthors = Mun S, Kim YJ, Markkandan K, Shin W, Oh S, Woo J, Yoo J, An H, Han K | display-authors = 6 | title = The Whole-Genome and Transcriptome of the Manila Clam (Ruditapes philippinarum) | journal = Genome Biology and Evolution | volume = 9 | issue = 6 | pages = 1487–1498 | date = June 2017 | pmid = 28505302 | pmc = 5499747 | doi = 10.1093/gbe/evx096 }}</ref>)
* ''[[Saccostrea glomerata]]'', Sydney rock oyster (2018<ref>{{cite journal | vauthors = Powell D, Subramanian S, Suwansa-Ard S, Zhao M, O'Connor W, Raftos D, Elizur A | title = The genome of the oyster Saccostrea offers insight into the environmental resilience of bivalves | journal = DNA Research | volume = 25 | issue = 6 | pages = 655–665 | date = December 2018 | pmid = 30295708 | pmc = 6289776 | doi = 10.1093/dnares/dsy032 }}</ref>)
* ''[[Scapharca broughtonii]]'', [[Tegillarca granosa|Blood clam]] (2019<ref>{{cite journal | vauthors = Bai CM, Xin LS, Rosani U, Wu B, Wang QC, Duan XK, Liu ZH, Wang CM | display-authors = 6 | title = Chromosomal-level assembly of the blood clam, Scapharca (Anadara) broughtonii, using long sequence reads and Hi-C | journal = GigaScience | volume = 8 | issue = 7 | date = July 2019 | pmid = 31289832 | pmc = 6615981 | doi = 10.1093/gigascience/giz067 }}</ref>)
* [[Venustaconcha|''Venustaconcha ellipsiformis'']], freshwater mussel (2018<ref>{{cite journal | vauthors = Renaut S, Guerra D, Hoeh WR, Stewart DT, Bogan AE, Ghiselli F, Milani L, Passamonti M, Breton S | display-authors = 6 | title = Genome Survey of the Freshwater Mussel Venustaconcha ellipsiformis (Bivalvia: Unionida) Using a Hybrid De Novo Assembly Approach | journal = Genome Biology and Evolution | volume = 10 | issue = 7 | pages = 1637–1646 | date = July 2018 | pmid = 29878181 | pmc = 6054159 | doi = 10.1093/gbe/evy117 }}</ref>)

===Platyhelminthes===
* ''[[Clonorchis sinensis]]'', [[liver fluke]] (human pathogen) (draft 2011<ref>{{cite journal | vauthors = Wang X, Chen W, Huang Y, Sun J, Men J, Liu H, Luo F, Guo L, Lv X, Deng C, Zhou C, Fan Y, Li X, Huang L, Hu Y, Liang C, Hu X, Xu J, Yu X | display-authors = 6 | title = The draft genome of the carcinogenic human liver fluke Clonorchis sinensis | journal = Genome Biology | volume = 12 | issue = 10 | pages = R107 | date = October 2011 | pmid = 22023798 | pmc = 3333777 | doi = 10.1186/gb-2011-12-10-r107 }}</ref>)
* ''[[Echinococcus granulosus]]'', [[tapeworm]] (dog pathogen) (2013,<ref name="Tsai2013">{{cite journal | vauthors = Tsai IJ, Zarowiecki M, Holroyd N, Garciarrubio A, Sánchez-Flores A, Brooks KL, Tracey A, Bobes RJ, Fragoso G, Sciutto E, Aslett M, Beasley H, Bennett HM, Cai X, Camicia F, Clark R, Cucher M, De Silva N, Day TA, Deplazes P, Estrada K, Fernández C, Holland PW, Hou J, Hu S, Huckvale T, Hung SS, Kamenetzky L, Keane JA, Kiss F, Koziol U, Lambert O, Liu K, Luo X, Luo Y, Macchiaroli N, Nichol S, Paps J, Parkinson J, Pouchkina-Stantcheva N, Riddiford N, Rosenzvit M, Salinas G, Wasmuth JD, Zamanian M, Zheng Y, Cai J, Soberón X, Olson PD, Laclette JP, Brehm K, Berriman M | display-authors = 6 | title = The genomes of four tapeworm species reveal adaptations to parasitism | journal = Nature | volume = 496 | issue = 7443 | pages = 57–63 | date = April 2013 | pmid = 23485966 | pmc = 3964345 | doi = 10.1038/nature12031 | bibcode = 2013Natur.496...57. }}</ref> 2013<ref>{{cite journal | vauthors = Zheng H, Zhang W, Zhang L, Zhang Z, Li J, Lu G, Zhu Y, Wang Y, Huang Y, Liu J, Kang H, Chen J, Wang L, Chen A, Yu S, Gao Z, Jin L, Gu W, Wang Z, Zhao L, Shi B, Wen H, Lin R, Jones MK, Brejova B, Vinar T, Zhao G, McManus DP, Chen Z, Zhou Y, Wang S | s2cid = 205347630 | display-authors = 6 | title = The genome of the hydatid tapeworm Echinococcus granulosus | journal = Nature Genetics | volume = 45 | issue = 10 | pages = 1168–75 | date = October 2013 | pmid = 24013640 | doi = 10.1038/ng.2757 }}</ref>)
* ''[[Echinococcus multilocularis]]'', [[tapeworm]] (2013<ref name="Tsai2013"/>)
* ''[[Hymenolepis microstoma]]'', [[tapeworm]] (2013<ref name="Tsai2013"/>)
* ''[[Schistosoma haematobium]]'', [[schistosome]] (human pathogen) (2012<ref>{{cite journal | vauthors = Young ND, Jex AR, Li B, Liu S, Yang L, Xiong Z, Li Y, Cantacessi C, Hall RS, Xu X, Chen F, Wu X, Zerlotini A, Oliveira G, Hofmann A, Zhang G, Fang X, Kang Y, Campbell BE, Loukas A, Ranganathan S, Rollinson D, Rinaldi G, Brindley PJ, Yang H, Wang J, Wang J, Gasser RB | s2cid = 13309839 | display-authors = 6 | title = Whole-genome sequence of Schistosoma haematobium | journal = Nature Genetics | volume = 44 | issue = 2 | pages = 221–5 | date = January 2012 | pmid = 22246508 | doi = 10.1038/ng.1065 | hdl = 10072/45821 | url = https://www.arca.fiocruz.br/handle/icict/11456 }}</ref> 2019<ref name="High-quality Schistosoma haematobiu">{{cite journal | vauthors = Stroehlein AJ, Korhonen PK, Chong TM, Lim YL, Chan KG, Webster B, Rollinson D, Brindley PJ, Gasser RB, Young ND | display-authors = 6 | title = High-quality Schistosoma haematobium genome achieved by single-molecule and long-range sequencing | journal = GigaScience | volume = 8 | issue = 9 | date = September 2019 | pmid = 31494670 | pmc = 6736295 | doi = 10.1093/gigascience/giz108 }}</ref>)
* ''[[Schistosoma japonicum]]'', [[schistosome]] (human pathogen) (2009<ref>{{cite journal | author = The ''Schistosoma japonicum'' Genome Sequencing and Functional Analysis Consortium | title = The Schistosoma japonicum genome reveals features of host-parasite interplay | journal = Nature | volume = 460 | issue = 7253 | pages = 345–51 | date = July 2009 | pmid = 19606140 | pmc = 3747554 | doi = 10.1038/nature08140 | bibcode = 2009Natur.460..345Z }}</ref>)
* ''[[Schistosoma mansoni]]'', [[schistosome]] (human pathogen) (2009,<ref name="Berriman2009">{{cite journal | vauthors = Berriman M, Haas BJ, LoVerde PT, Wilson RA, Dillon GP, Cerqueira GC, Mashiyama ST, Al-Lazikani B, Andrade LF, Ashton PD, Aslett MA, Bartholomeu DC, Blandin G, Caffrey CR, Coghlan A, Coulson R, Day TA, Delcher A, DeMarco R, Djikeng A, Eyre T, Gamble JA, Ghedin E, Gu Y, Hertz-Fowler C, Hirai H, Hirai Y, Houston R, Ivens A, Johnston DA, Lacerda D, Macedo CD, McVeigh P, Ning Z, Oliveira G, Overington JP, Parkhill J, Pertea M, Pierce RJ, Protasio AV, Quail MA, Rajandream MA, Rogers J, Sajid M, Salzberg SL, Stanke M, Tivey AR, White O, Williams DL, Wortman J, Wu W, Zamanian M, Zerlotini A, Fraser-Liggett CM, Barrell BG, El-Sayed NM | display-authors = 6 | title = The genome of the blood fluke Schistosoma mansoni | journal = Nature | volume = 460 | issue = 7253 | pages = 352–8 | date = July 2009 | pmid = 19606141 | pmc = 2756445 | doi = 10.1038/nature08160 | bibcode = 2009Natur.460..352B }}</ref> 2012<ref>{{cite journal | vauthors = Protasio AV, Tsai IJ, Babbage A, Nichol S, Hunt M, Aslett MA, De Silva N, Velarde GS, Anderson TJ, Clark RC, Davidson C, Dillon GP, Holroyd NE, LoVerde PT, Lloyd C, McQuillan J, Oliveira G, Otto TD, Parker-Manuel SJ, Quail MA, Wilson RA, Zerlotini A, Dunne DW, Berriman M | display-authors = 6 | title = A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni | journal = PLOS Neglected Tropical Diseases | volume = 6 | issue = 1 | pages = e1455 | date = January 2012 | pmid = 22253936 | pmc = 3254664 | doi = 10.1371/journal.pntd.0001455 }}</ref>)
* ''[[Schmidtea mediterranea]]'', [[planarian]] (model organism) (2006<ref>{{cite web |url=http://genome.wustl.edu/genomes/view/schmidtea_mediterranea |title=Project |access-date=2012-05-23 |archive-url=https://web.archive.org/web/20120308080143/http://genome.wustl.edu/genomes/view/schmidtea_mediterranea |archive-date=2012-03-08 |url-status=dead }}</ref><ref name=smedgd>{{cite web|url=http://smedgd.neuro.utah.edu |title=SmedGD}}</ref>)
* ''[[Taenia solium]]'', [[tapeworm]] (2013<ref name="Tsai2013"/>)

===Nematodes===
* ''[[Ancylostoma ceylanicum]]'', zoonotic [[hookworm]] infecting both humans and other mammals (2015<ref>{{cite journal | vauthors = Schwarz EM, Hu Y, Antoshechkin I, Miller MM, Sternberg PW, Aroian RV | title = The genome and transcriptome of the zoonotic hookworm Ancylostoma ceylanicum identify infection-specific gene families | journal = Nature Genetics | volume = 47 | issue = 4 | pages = 416–22 | date = April 2015 | pmid = 25730766 | pmc = 4617383 | doi = 10.1038/ng.3237 }}</ref>)
* ''[[Ascaris suum]]'', pig-infecting giant roundworm, closely related to human-infecting giant roundworm ''[[Ascaris lumbricoides]]'' (2011<ref>{{cite journal | vauthors = Jex AR, Liu S, Li B, Young ND, Hall RS, Li Y, Yang L, Zeng N, Xu X, Xiong Z, Chen F, Wu X, Zhang G, Fang X, Kang Y, Anderson GA, Harris TW, Campbell BE, Vlaminck J, Wang T, Cantacessi C, Schwarz EM, Ranganathan S, Geldhof P, Nejsum P, Sternberg PW, Yang H, Wang J, Wang J, Gasser RB | s2cid = 205226683 | display-authors = 6 | title = Ascaris suum draft genome | journal = Nature | volume = 479 | issue = 7374 | pages = 529–33 | date = October 2011 | pmid = 22031327 | doi = 10.1038/nature10553 | bibcode = 2011Natur.479..529J }}</ref>)
* ''[[Brugia malayi]]''<small> (Strain:TRS)</small>, human-infecting filarial parasite (2007<ref>{{cite journal | vauthors = Ghedin E, Wang S, Spiro D, Caler E, Zhao Q, Crabtree J, Allen JE, Delcher AL, Guiliano DB, Miranda-Saavedra D, Angiuoli SV, Creasy T, Amedeo P, Haas B, El-Sayed NM, Wortman JR, Feldblyum T, Tallon L, Schatz M, Shumway M, Koo H, Salzberg SL, Schobel S, Pertea M, Pop M, White O, Barton GJ, Carlow CK, Crawford MJ, Daub J, Dimmic MW, Estes CF, Foster JM, Ganatra M, Gregory WF, Johnson NM, Jin J, Komuniecki R, Korf I, Kumar S, Laney S, Li BW, Li W, Lindblom TH, Lustigman S, Ma D, Maina CV, Martin DM, McCarter JP, McReynolds L, Mitreva M, Nutman TB, Parkinson J, Peregrín-Alvarez JM, Poole C, Ren Q, Saunders L, Sluder AE, Smith K, Stanke M, Unnasch TR, Ware J, Wei AD, Weil G, Williams DJ, Zhang Y, Williams SA, Fraser-Liggett C, Slatko B, Blaxter ML, Scott AL | display-authors = 6 | title = Draft genome of the filarial nematode parasite Brugia malayi | journal = Science | volume = 317 | issue = 5845 | pages = 1756–60 | date = September 2007 | pmid = 17885136 | pmc = 2613796 | doi = 10.1126/science.1145406 | bibcode = 2007Sci...317.1756G }}</ref>)
* ''[[Bursaphelenchus xylophilus]]'', infects pine trees (2011<ref>{{cite journal | vauthors = Kikuchi T, Cotton JA, Dalzell JJ, Hasegawa K, Kanzaki N, McVeigh P, Takanashi T, Tsai IJ, Assefa SA, Cock PJ, Otto TD, Hunt M, Reid AJ, Sanchez-Flores A, Tsuchihara K, Yokoi T, Larsson MC, Miwa J, Maule AG, Sahashi N, Jones JT, Berriman M | display-authors = 6 | title = Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus | journal = PLOS Pathogens | volume = 7 | issue = 9 | pages = e1002219 | date = September 2011 | pmid = 21909270 | pmc = 3164644 | doi = 10.1371/journal.ppat.1002219 }}</ref>)
* ''[[Caenorhabditis angaria]]''<small> (Strain:PS1010)</small> (2010<ref>{{cite journal | vauthors = Mortazavi A, Schwarz EM, Williams B, Schaeffer L, Antoshechkin I, Wold BJ, Sternberg PW | display-authors = 6 | title = Scaffolding a Caenorhabditis nematode genome with RNA-seq | journal = Genome Research | volume = 20 | issue = 12 | pages = 1740–7 | date = December 2010 | pmid = 20980554 | pmc = 2990000 | doi = 10.1101/gr.111021.110 }}</ref>)
* ''[[Caenorhabditis brenneri]]'', a [[Gonochorism|gonochoristic]] (male-female obligate) species more closely related to ''C. briggsae'' than ''C. elegans''<ref>{{cite web|url=http://genome.wustl.edu/genome.cgi?GENOME=Caenorhabditis%20n.%20sp.%20PB2801 |title=GSC: Caenorhabditis n. sp. PB2801 |access-date=28 April 2007 |archive-date=18 August 2007 |archive-url=https://web.archive.org/web/20070818041311/http://genome.wustl.edu/genome.cgi?GENOME=Caenorhabditis%20n.%20sp.%20PB2801 |url-status=dead }}</ref><ref>{{cite web|title=Wormbase|url=http://www.wormbase.org/species/c_brenneri#4--10|access-date=4 September 2015}}</ref>
* ''[[Caenorhabditis briggsae]]'' (2003<ref>{{cite journal | vauthors = Stein LD, Bao Z, Blasiar D, Blumenthal T, Brent MR, Chen N, Chinwalla A, Clarke L, Clee C, Coghlan A, Coulson A, D'Eustachio P, Fitch DH, Fulton LA, Fulton RE, Griffiths-Jones S, Harris TW, Hillier LW, Kamath R, Kuwabara PE, Mardis ER, Marra MA, Miner TL, Minx P, Mullikin JC, Plumb RW, Rogers J, Schein JE, Sohrmann M, Spieth J, Stajich JE, Wei C, Willey D, Wilson RK, Durbin R, Waterston RH | display-authors = 6 | title = The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics | journal = PLOS Biology | volume = 1 | issue = 2 | pages = E45 | date = November 2003 | pmid = 14624247 | pmc = 261899 | doi = 10.1371/journal.pbio.0000045 }}</ref>)
* ''[[Caenorhabditis elegans]]''<small> (Strain:Bristol N2)</small>, model organism (1998<ref>{{cite journal | author = C. elegans Sequencing Consortium. | title = Genome sequence of the nematode C. elegans: a platform for investigating biology | journal = Science | volume = 282 | issue = 5396 | pages = 2012–8 | date = December 1998 | pmid = 9851916 | doi = 10.1126/science.282.5396.2012 | bibcode = 1998Sci...282.2012. }}</ref>)
* ''[[Caenorhabditis remanei]]'', a [[Gonochorism|gonochoristic]] (male-female obligate) species more closely related to ''C. briggsae'' than ''C. elegans''<ref>{{cite web|url=http://genome.wustl.edu/genome.cgi?GENOME=Caenorhabditis%20remanei |title=GSC: Caenorhabditis remanei |access-date=28 April 2007 |archive-date=13 March 2007 |archive-url=https://web.archive.org/web/20070313194941/http://www.genome.wustl.edu/genome.cgi?GENOME=Caenorhabditis%20remanei |url-status=dead }}</ref><ref name=haag>{{cite journal | vauthors = Haag ES, Chamberlin H, Coghlan A, Fitch DH, Peters AD, Schulenburg H | title = Caenorhabditis evolution: if they all look alike, you aren't looking hard enough | journal = Trends in Genetics | volume = 23 | issue = 3 | pages = 101–4 | date = March 2007 | pmid = 17275130 | doi = 10.1016/j.tig.2007.01.002 | url = http://www.life.umd.edu/biology/haag/Haag_etal.PortugalMeeting_TIG.pdf }}</ref>
* ''[[Dirofilaria immitis]]'', dog-infecting filarial parasite (2012<ref>{{cite journal | vauthors = Godel C, Kumar S, Koutsovoulos G, Ludin P, Nilsson D, Comandatore F, Wrobel N, Thompson M, Schmid CD, Goto S, Bringaud F, Wolstenholme A, Bandi C, Epe C, Kaminsky R, Blaxter M, Mäser P | display-authors = 6 | title = The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets | journal = FASEB Journal | volume = 26 | issue = 11 | pages = 4650–61 | date = November 2012 | pmid = 22889830 | pmc = 3475251 | doi = 10.1096/fj.12-205096 }}</ref>)
* ''[[Globodera pallida]]'', plant pathogen (2014<ref>{{cite journal | vauthors = Cotton JA, Lilley CJ, Jones LM, Kikuchi T, Reid AJ, Thorpe P, Tsai IJ, Beasley H, Blok V, Cock PJ, Eves-van den Akker S, Holroyd N, Hunt M, Mantelin S, Naghra H, Pain A, Palomares-Rius JE, Zarowiecki M, Berriman M, Jones JT, Urwin PE | display-authors = 6 | title = The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode | journal = Genome Biology | volume = 15 | issue = 3 | pages = R43 | date = March 2014 | pmid = 24580726 | pmc = 4054857 | doi = 10.1186/gb-2014-15-3-r43 }}</ref>)
* ''[[Haemonchus contortus]]'', blood-feeding parasite infecting sheep and goats (2013<ref>{{cite journal | vauthors = Laing R, Kikuchi T, Martinelli A, Tsai IJ, Beech RN, Redman E, Holroyd N, Bartley DJ, Beasley H, Britton C, Curran D, Devaney E, Gilabert A, Hunt M, Jackson F, Johnston SL, Kryukov I, Li K, Morrison AA, Reid AJ, Sargison N, Saunders GI, Wasmuth JD, Wolstenholme A, Berriman M, Gilleard JS, Cotton JA | display-authors = 6 | title = The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery | journal = Genome Biology | volume = 14 | issue = 8 | pages = R88 | date = August 2013 | pmid = 23985316 | pmc = 4054779 | doi = 10.1186/gb-2013-14-8-r88 }}</ref>)
* ''[[Heterodera glycines]]'', soybean cyst nematode (2019<ref>{{cite journal | vauthors = Masonbrink R, Maier TR, Muppirala U, Seetharam AS, Lord E, Juvale PS, Schmutz J, Johnson NT, Korkin D, Mitchum MG, Mimee B, Akker SE, Hudson M, Severin AJ, Baum TJ| display-authors = 6 | title = The genome of the soybean cyst nematode (''Heterodera glycines'') reveals complex patterns of duplications involved in the evolution of parasitism genes | journal = BMC Genomics | volume = 20 | issue = 1 | pages = 119 | date = 9 February 2019 | pmid = 30732586 | pmc = 6367775 | doi = 10.1186/s12864-019-5485-8 }}</ref>)
* ''[[Heterorhabditis bacteriophora]]'', (2013<ref>{{cite journal | vauthors = Bai X, Adams BJ, Ciche TA, Clifton S, Gaugler R, Kim KS, Spieth J, Sternberg PW, Wilson RK, Grewal PS | display-authors = 6 | title = A lover and a fighter: the genome sequence of an entomopathogenic nematode Heterorhabditis bacteriophora | journal = PLOS ONE | volume = 8 | issue = 7 | pages = e69618 | date = 18 July 2013 | pmid = 23874975 | pmc = 3715494 | doi = 10.1371/journal.pone.0069618 | bibcode = 2013PLoSO...869618B }}</ref>)
* ''[[Loa loa]]'', human-infecting filarial parasite (2013<ref>{{cite journal | vauthors = Desjardins CA, Cerqueira GC, Goldberg JM, Dunning Hotopp JC, Haas BJ, Zucker J, Ribeiro JM, Saif S, Levin JZ, Fan L, Zeng Q, Russ C, Wortman JR, Fink DL, Birren BW, Nutman TB | display-authors = 6 | title = Genomics of Loa loa, a Wolbachia-free filarial parasite of humans | journal = Nature Genetics | volume = 45 | issue = 5 | pages = 495–500 | date = May 2013 | pmid = 23525074 | pmc = 4238225 | doi = 10.1038/ng.2585 }}</ref>)
* ''[[Meloidogyne hapla]]'', northern root-knot nematode (plant pathogen) (2008<ref>{{cite journal | vauthors = Opperman CH, Bird DM, Williamson VM, Rokhsar DS, Burke M, Cohn J, Cromer J, Diener S, Gajan J, Graham S, Houfek TD, Liu Q, Mitros T, Schaff J, Schaffer R, Scholl E, Sosinski BR, Thomas VP, Windham E | display-authors = 6 | title = Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism | journal = Proceedings of the National Academy of Sciences of the United States of America | volume = 105 | issue = 39 | pages = 14802–7 | date = September 2008 | pmid = 18809916 | pmc = 2547418 | doi = 10.1073/pnas.0805946105 | bibcode = 2008PNAS..10514802O }}</ref>)
* ''[[Meloidogyne incognita]]'', southern root-knot nematode (plant pathogen) (2008<ref>{{cite journal | vauthors = Abad P, Gouzy J, Aury JM, Castagnone-Sereno P, Danchin EG, Deleury E, Perfus-Barbeoch L, Anthouard V, Artiguenave F, Blok VC, Caillaud MC, Coutinho PM, Dasilva C, De Luca F, Deau F, Esquibet M, Flutre T, Goldstone JV, Hamamouch N, Hewezi T, Jaillon O, Jubin C, Leonetti P, Magliano M, Maier TR, Markov GV, McVeigh P, Pesole G, Poulain J, Robinson-Rechavi M, Sallet E, Ségurens B, Steinbach D, Tytgat T, Ugarte E, van Ghelder C, Veronico P, Baum TJ, Blaxter M, Bleve-Zacheo T, Davis EL, Ewbank JJ, Favery B, Grenier E, Henrissat B, Jones JT, Laudet V, Maule AG, Quesneville H, Rosso MN, Schiex T, Smant G, Weissenbach J, Wincker P | s2cid = 8836601 | display-authors = 6 | title = Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita | journal = Nature Biotechnology | volume = 26 | issue = 8 | pages = 909–15 | date = August 2008 | pmid = 18660804 | doi = 10.1038/nbt.1482 }}</ref>)
* ''[[Necator americanus]]'', human-infecting [[hookworm]] (2014<ref>{{cite journal | vauthors = Tang YT, Gao X, Rosa BA, Abubucker S, Hallsworth-Pepin K, Martin J, Tyagi R, Heizer E, Zhang X, Bhonagiri-Palsikar V, Minx P, Warren WC, Wang Q, Zhan B, Hotez PJ, Sternberg PW, Dougall A, Gaze ST, Mulvenna J, Sotillo J, Ranganathan S, Rabelo EM, Wilson RW, Felgner PL, Bethony J, Hawdon JM, Gasser RB, Loukas A, Mitreva M | display-authors = 6 | title = Genome of the human hookworm Necator americanus | journal = Nature Genetics | volume = 46 | issue = 3 | pages = 261–269 | date = March 2014 | pmid = 24441737 | pmc = 3978129 | doi = 10.1038/ng.2875 }}</ref>)
* ''[[Onchocerca volvulus]]'', human-infecting filarial parasite<ref name=broad_filarial />
* ''[[Pristionchus pacificus]]'', [[Model organism#Invertebrates|model invertebrate]] (2008<ref name="Ppacificus">{{cite journal | vauthors = Dieterich C, Clifton SW, Schuster LN, Chinwalla A, Delehaunty K, Dinkelacker I, Fulton L, Fulton R, Godfrey J, Minx P, Mitreva M, Roeseler W, Tian H, Witte H, Yang SP, Wilson RK, Sommer RJ | display-authors = 6 | title = The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism | journal = Nature Genetics | volume = 40 | issue = 10 | pages = 1193–8 | date = October 2008 | pmid = 18806794 | pmc = 3816844 | doi = 10.1038/ng.227 }}</ref>)
* ''[[Romanomermis culicivorax]]'', entomopathogenic nematode that invades larvae of various mosquito species (2013<ref>{{cite journal | vauthors = Schiffer PH, Kroiher M, Kraus C, Koutsovoulos GD, Kumar S, Camps JI, Nsah NA, Stappert D, Morris K, Heger P, Altmüller J, Frommolt P, Nürnberg P, Thomas WK, Blaxter ML, Schierenberg E | display-authors = 6 | title = The genome of Romanomermis culicivorax: revealing fundamental changes in the core developmental genetic toolkit in Nematoda | journal = BMC Genomics | volume = 14 | issue = 1 | pages = 923 | date = December 2013 | pmid = 24373391 | pmc = 3890508 | doi = 10.1186/1471-2164-14-923 }}</ref>)
* ''[[Schistosoma haematobium]]'', urinary blood fluke infecting humans (2019<ref name="High-quality Schistosoma haematobiu"/>)
* ''[[Trichuris suis]]'', pig-infecting [[whipworm]] (2014<ref>{{cite journal | vauthors = Jex AR, Nejsum P, Schwarz EM, Hu L, Young ND, Hall RS, Korhonen PK, Liao S, Thamsborg S, Xia J, Xu P, Wang S, Scheerlinck JP, Hofmann A, Sternberg PW, Wang J, Gasser RB | display-authors = 6 | title = Genome and transcriptome of the porcine whipworm Trichuris suis | journal = Nature Genetics | volume = 46 | issue = 7 | pages = 701–6 | date = July 2014 | pmid = 24929829 | pmc = 4105696 | doi = 10.1038/ng.3012 }}</ref>)
* ''[[Trichuris muris]]'', mouse-infecting [[whipworm]] (2014<ref name="foth2014">{{cite journal | vauthors = Foth BJ, Tsai IJ, Reid AJ, Bancroft AJ, Nichol S, Tracey A, Holroyd N, Cotton JA, Stanley EJ, Zarowiecki M, Liu JZ, Huckvale T, Cooper PJ, Grencis RK, Berriman M | display-authors = 6 | title = Whipworm genome and dual-species transcriptome analyses provide molecular insights into an intimate host-parasite interaction | journal = Nature Genetics | volume = 46 | issue = 7 | pages = 693–700 | date = July 2014 | pmid = 24929830 | pmc = 5012510 | doi = 10.1038/ng.3010 }}</ref>)
* ''[[Trichuris trichiura]]'', human-infecting [[whipworm]] (2014<ref name="foth2014" />)
* ''[[Wuchereria bancrofti]]'', human-infecting filarial parasite<ref name=broad_filarial>{{cite web|title=Filarial worms Database|url=http://www.broadinstitute.org/annotation/genome/filarial_worms/MultiHome.html|access-date=5 June 2015|date=2015-06-04}}</ref>

===Annelids===
* ''[[Capitella teleta]]'', [[polychaete]] (2007,<ref>{{Cite web|url=http://genome.jgi-psf.org/Capca1/Capca1.home.html |title=JGI: Capitella teleta}}</ref> 2013<ref name="Simakov2013"/>)
* ''[[Helobdella robusta]]'', [[leech]] (2007,<ref>{{Cite web|url=http://genome.jgi-psf.org/Helro1/Helro1.home.html |title=JGI: Helobdella robusta}}</ref> 2013<ref name="Simakov2013"/>)
* ''[[Eisenia fetida]]'', [[earthworm]] (2015,<ref>{{Cite web|url=http://ryanlab.whitney.ufl.edu/genomes/Efet |title=WhitneyLab: Eisenia fetida}}</ref> 2016<ref name="pmid26659921">{{cite journal | vauthors = Zwarycz AS, Nossa CW, Putnam NH, Ryan JF | title = Timing and Scope of Genomic Expansion within Annelida: Evidence from Homeoboxes in the Genome of the Earthworm Eisenia fetida | journal = Genome Biology and Evolution | volume = 8 | issue = 1 | pages = 271–81 | date = December 2015 | pmid = 26659921 | pmc = 4758240 | doi = 10.1093/gbe/evv243 }}</ref>)

===Bryozoa===
* ''[[Bugula neritina]]'', [[bryozoan]] (2020,<ref>{{cite journal |vauthors = Rayko M, Komissarov A, Lim-Fong G, Rhodes AC, Kwan JC, Kliver S, Chesnokova P, O'Brien SJ, Lopez JV | title = Draft genome of Bryozoan Bugula neritina – a colonial animal packing powerful symbionts and potential medicines | journal = Scientific Data | volume = 7 | pages = 356 | date = September 2020 | issue = 1 | doi = 10.1038/s41597-020-00684-y | pmid = 33082320 | pmc = 7576161 }}</ref>)

===Brachiopoda===
* ''[[Lingula anatina]]'', [[brachiopod]] (2015,<ref>{{cite journal | vauthors = Luo YJ, Takeuchi T, Koyanagi R, Yamada L, Kanda M, Khalturina M, Fujie M, Yamasaki S, Endo K, Satoh N | display-authors = 6 | title = The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization | journal = Nature Communications | volume = 6 | pages = 8301 | date = September 2015 | pmid = 26383154 | pmc = 4595640 | doi = 10.1038/ncomms9301 | bibcode = 2015NatCo...6.8301L }}</ref>)

===Rotifera===
* ''[[Adineta vaga]]'', [[rotifer]] (2013,<ref>{{cite journal | vauthors = Flot JF, Hespeels B, Li X, Noel B, Arkhipova I, Danchin EG, Hejnol A, Henrissat B, Koszul R, Aury JM, Barbe V, Barthélémy RM, Bast J, Bazykin GA, Chabrol O, Couloux A, Da Rocha M, Da Silva C, Gladyshev E, Gouret P, Hallatschek O, Hecox-Lea B, Labadie K, Lejeune B, Piskurek O, Poulain J, Rodriguez F, Ryan JF, Vakhrusheva OA, Wajnberg E, Wirth B, Yushenova I, Kellis M, Kondrashov AS, Mark Welch DB, Pontarotti P, Weissenbach J, Wincker P, Jaillon O, Van Doninck K | s2cid = 1706158 | display-authors = 6 | title = Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga | journal = Nature | volume = 500 | issue = 7463 | pages = 453–7 | date = August 2013 | pmid = 23873043 | doi = 10.1038/nature12326 | bibcode = 2013Natur.500..453F }}</ref>)

==See also==
* [[List of sequenced bacterial genomes]]
* [[List of sequenced archaeal genomes]]
* [[List of sequenced eukaryotic genomes]]
* [[List of sequenced fungi genomes]]
* [[List of sequenced plant genomes]]
* [[List of sequenced protist genomes]]
* [[List of sequenced plastomes]]

==References==
{{reflist}}

{{DEFAULTSORT:Sequenced animal genomes}}
[[Category:Lists of sequenced genomes|Animal]]
[[Category:Biology-related lists]]

Revision as of 06:45, 12 April 2021

Mammals

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