Triticeae: Difference between revisions
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==Evolution of distal taxa== |
==Evolution of distal taxa== |
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While it might be tempting to think that since ''Hordeum'' and ''Triticum'' were domesticated proximally, that these two crop plants are closely related within ''Triticeae''. Studies in Anatolia now suggest Rye (Secale) was cultivated but not domesticated prior to the [[holocene]], prior to evidence for the cultivation of wheat, but as climate changed the favorablitiy of Secale declined. The ''Secale'' may be a very early branch from the goat grass clad or goat grasses are a branch of early rye grasses, as branch these are almost contemporary with the branching between monoploid wheat and ''Aegilops tauschii''. |
While it might be tempting to think that since ''Hordeum'' and ''Triticum'' were domesticated proximally, that these two crop plants are closely related within ''Triticeae''. Studies in Anatolia now suggest Rye (''[[Secale]]'') was cultivated but not domesticated prior to the [[holocene]], prior to evidence for the cultivation of wheat, but as climate changed the favorablitiy of Secale declined. The ''Secale'' may be a very early branch from the goat grass clad or goat grasses are a branch of early rye grasses, as branch these are almost contemporary with the branching between monoploid wheat and ''Aegilops tauschii''. |
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More distantly related are the Australian wheatgrasses. One of the |
More distantly related are the Australian wheatgrasses. One of the earliest branches in Triticeae produces the ''Psuedoroegeneria'' (Genome = StSt) and ''Hordeum'' (Genome = HH) genera, and allotetraploid crosses with ''[[Hordeum]]'' and are seen in ''Elmyus'' (HHStSt),<ref name = "Elmyus_Reticulated">{{cite journal | author = Mason-Gamer R | title = Reticulate evolution, introgression, and intertribal gene capture in an allohexaploid grass. | journal = Syst Biol | volume = 53 | issue = 1 | pages = 25-37 | year = 2004 | id = PMID 14965898}}</ref> but also shows introgression from Australian and Agropyron wheatgrasses.<ref name="Elmyus_Genome">{{cite journal | author = Liu Q, Ge S, Tang H, Zhang X, Zhu G, Lu B | title = Phylogenetic relationships in Elymus (Poaceae: Triticeae) based on the nuclear ribosomal internal transcribed spacer and chloroplast trnL-F sequences. | journal = New Phytol | volume = 170 | issue = 2 | pages = 411-20 | year = 2006 | id = PMID 16608465}}</ref> Elymus contains mostly ''Psuedoroegeneria'' mtDNA.<ref name = "Elymus_cpDNA">{{cite journal | author = Mason-Gamer R, Orme N, Anderson C | title = Phylogenetic analysis of North American Elymus and the monogenomic Triticeae (Poaceae) using three chloroplast DNA data sets. | journal = Genome | volume = 45 | issue = 6 | pages = 991-1002 | year = 2002 | id = PMID 12502243}}</ref> Like other polyploid genomic ''Triticeae'', ''Elymus'' represents also a number of prospective cultivars. Thus ''Hordeum'' cultivatable properties are not necessarily tied to the middle east or wheat domestication, and its relatively early |
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branchpoint relative to |
branchpoint relative to ''Aegilopoides'' and derivatives indicate relatively independent |
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evolution for millions of years. |
evolution for millions of years. |
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[[Triticeae glutens]] examines of the proteins of ''Triticeae'', important in the link between gluten, gastrointestinal, allergic and autoimmune diseases that are primarily focused on the glutens of Wheat, Rye and Barley, but may also be triggered by |
[[Triticeae glutens]] examines of the proteins of ''Triticeae'', important in the link between gluten, gastrointestinal, allergic and autoimmune diseases that are primarily focused on the glutens of Wheat, Rye and Barley, but may also be triggered by similar proteins in Aveneae species or subspecies.<ref name="pmid17376046">{{cite journal |author=Silano M, Dessì M, De Vincenzi M, Cornell H |title=In vitro tests indicate that certain varieties of oats may be harmful to patients with coeliac disease |journal=J. Gastroenterol. Hepatol. |volume=22 |issue=4 |pages=528-31 |year=2007 |pmid=17376046 |doi=10.1111/j.1440-1746.2006.04512.x}}</ref> Some of the recently discovered biochemical and immunochemical properties of these proteins suggest they evolved for protection against dedicated |
||
or continuous consumption by mammalian seed eaters.<ref name="pmid17544966">{{cite journal |author=Mamone G, Ferranti P, Rossi M, ''et al'' |title=Identification of a peptide from alpha-gliadin resistant to digestive enzymes: Implications for celiac disease |journal= |volume= |issue= |pages= |year=2007 |pmid=17544966 |doi=10.1016/j.jchromb.2007.05.009}}</ref><ref name="pmid16212427">{{cite journal |author=Shan L, Qiao SW, Arentz-Hansen H, ''et al'' |title=Identification and analysis of multivalent proteolytically resistant peptides from gluten: implications for celiac sprue |journal=J. Proteome Res. |volume=4 |issue=5 |pages=1732-41 |year=2005 |pmid=16212427 |doi=10.1021/pr050173t}}</ref> One recent publication even begs the question is wheat safe for anyone to eat?<ref name="pmid17519496">{{cite journal |author=Bernardo D, Garrote JA, Fernández-Salazar L, Riestra S, Arranz E |title=Is gliadin really safe for non-coeliac individuals? Production of interleukin 15 in biopsy culture from non-coeliac individuals challenged with gliadin peptides |journal=Gut |volume=56 |issue=6 |pages=889-90 |year=2007 |pmid=17519496 |doi=10.1136/gut.2006.118265}}</ref> Overlapping properties with regard to food preparation have made these proteins much more useful as cereal cultivars and a balanced perspective suggest a variable tolerance |
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to Triticeae glutens reflects early childhood environment and genetic predisposition. |
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Bread wheat stands out in this regard because it contains a larger proportion of these proteins which make it facilitative for bread making, but also with more 'pathogenic' isoforms resulting from many loci on three genomes, A,B, and D. |
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''Triciticeae'' domestication demostrates the benefit of increasing genomes as a means of enriching certain seed qualities. The process also benefits the reduction of genes that interfere with industrial processing. The creation a polyploids is not difficult so much as picking the right two cultivars to cross. The Aegilopoidic species indicate that cultivating and selecting grasses prior to crossing (removing the undesirable traits in both stains) is one possibly way to simplify selection on the allopolyploid products. |
''Triciticeae'' domestication demostrates the benefit of increasing genomes as a means of enriching certain seed qualities. The process also benefits the reduction of genes that interfere with industrial processing. The creation a polyploids is not difficult so much as picking the right two cultivars to cross. The Aegilopoidic species indicate that cultivating and selecting grasses prior to crossing (removing the undesirable traits in both stains) is one possibly way to simplify selection on the allopolyploid products. |
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Revision as of 13:52, 30 June 2007
| Tribe: Triticeae | |
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| File:Triticeae.JPG | |
| Scientific classification | |
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See text. | |
Triticeae is a tribe within the Pooideae subfamily of grasses that includes genera with many domesticated species. Major crop genera are found in this tribe including wheat (See Wheat taxonomy), barley, and rye; crops in other genera include some for human consumption and others used for animal feed or rangeland protection. Among the world's cultivated species this tribe has some of the most complex genetic histories. An example is bread wheat, which contains the genomes of three species, only one of them originally a wheat Triticum species. Seed storage proteins in Triticeae are implicated in various food allergies and intolerances.
Triticeae Genera
This list of tribes broadly follows that in Grass Genera of World. Although there are taxonomic disagreements about the precise circumscription of some genera, this scheme is typical of those used in taxonomic literature.
Aegilops (goat grasses - jointed goatgrass, Tausch goatgrass,ovate goatgrass,barbed goatgrass, Persian goatgrass, etc)
Agropyron (crested wheatgrasses - Desert wheatgrass, quackgrass,western wheatgrass, etc)
Amblyopyrum (Slim wheat grass - amblyopyrum)
Australopyrum (Australian wheatgrasses - velvet wheatgrass,pectinated wheatgrass, etc)
Cockaynea
Crithopsis (delileana grass)
Dasypyrum (Mosquito grass)
Elymus (wild ryes - blue wildrye,squirreltail ryegrass,Texas ryegrass, etc) (Genome = StH)
Elytrigia
Eremium (Argentine desert ryegrass)
Eremopyrum (false wheatgrasses - tapertip false wheatgrass,Oriental false wheatgrass,annual wheatgrass, etc)
Festucopsis
Haynaldia
Henrardia
Heteranthelium
Hordelymus
Hordeum (barleys - common barley, arizona barley,foxtail barley, etc) (genome = H)
Hystrix (porcupine grass- bottlebrush grass)
Kengyilia
Leymus (wild rye- American dune grass,lyme grass,creeping rye,etc)
Lophopyrum (tall wheatgrass)
Malacurus
Pascopyrum(western wheatgrass)
Peridictyon
Psathyrostachys (Russian wildrye)
Pseudoroegneria (bluebunch wheatgrasses - bluebunch wheatgrass, beardless wheatgrass, etc) (Genome = St)
Secale (Ryes - Cereal rye, Himalayan Rye, Montana Rye,etc)
Sitanion
Stenostachys (New Zealand wheatgrasses) (Genome HW)
Taeniatherum (medusahead - medusahead)
Thinopyrum (intermediate wheatgrass, Russian wheatgrass, tall wheatgrass,thick quackgrass)
Triticum (Wheats - common wheat, durum wheat, etc)
Cultivated or Edible Species
Aegilops
- Various species (rarely identifiable to species in archaeological material) occur in pre-agrarian archaeobotanical remains from Near Eastern sites. Their edible grains were doubtless harvested as wild food resources.
- speltoides - ancient food grain, putative source of B genome in bread wheat and G genome in T. timopheevii
- tauschii - Source of D genome in wheat
Amblyopyrum
- muticum - Source of T genome.
Elmyus
Various species are cultivated for pastoral purposes or to protect fallow land from opportunistic or invasive species
- canadensis - edible, bread flour capable, fiddly seeds
- trachycaulus - pastoral cultivar
Hordeum
Many barley cultivars
- vulgare - common barley (6 subspecies, ~100 cultivars)
- bulbosum - edible seeds
- murinum (mouse barley) - cooked as piñole, bread flour capable, medicinal: diuretic.
Leymus
- arenarius (Lyme grass) - bread flour capable, possible food additive
- racemosus (Volga Wild Rye) - drought tolerant cereal, used in Russia
- condensatus (Giant Wild Rye) - Edible seeds, harvesting problematic small seeds
- triticoides (Squaw grass) - used in North America, seed hairs must be singed
Secale
Ryes
- cereale (Cereal Rye) - Livestock feed and sour dough bread - 6 subspecies.
- cornutum-ergot (Ergot of Spurred Rye) - herbal medicine at very low doses,[1] deadly poisonous as food.
- strictum - actively cultivated
- sylvestre - (Tibetan Rye) - actively cultivated in Tibet and China highlands.
- vavilovi (Armenian Wild Rye) - edible seeds, thickener.
Triticum
(Wheat)
- aestivum (bread wheat) - (AABBDD Genome)
- compactum (club wheat)
- macha (hulled)
- spelta (hulled, spelt)
- sphaerococcum (shot wheat)
- monococcum (Einkorn wheat) (A Genome)
- timopheevii (Sanduri wheat)
- turgidum (poulard wheat) (AB Genome)
- carthlicum (Persian black wheat)
- dicoccoides (wild emmer wheat)
- dicoccum (cultivated emmer wheat) - used to make Farro
- durum (durum wheat)
- paleocolchicum
- polonicum (Polish wheat)
- turanicum
- turgidum
Genetics
Triticeae and its sister tribe Bromeae (possible cultivars: Bromus mango S. America) when joined form a sister clade with Poeae and Aveneae (oats). Inter-generic gene flow characterized these taxa from the early stages. For example, Poeae and Aveneae share a genetic marker with barley and 10 other members of Triticeae, whereas all 19 genera of Triticeae bear a wheat marker along with Bromeae.[2] Genera within Triticeae contain diploid, allotetraploid and/or allohexaploid genomes, the capacity for form allopolyploid genomes varies within the tribe. In this tribe, the majority of diploid species tested are closely related to Aegilops, the more distal members (earliest branch points) include Hordeum (Barley), Eremian, Psathyrostachys. The broad distribution of cultivars within the Tribe and the properties of the proteins have implication in the treatment of certain digestive diseases and autoimmune disorders.
Goat Grasses and the Evolution of Bread Wheat
Tetraploidation in Wild Emmer Wheat
Aegilops appears to be basal to several taxa such as Triticum, Ambylopyrum, and Crithopsis. Certain species such as Aegilops speltoides could potentially represent core variants of the taxa. The generic placement may be more a matter of nomenclature. Aegilops and Triticum genera are very closely related as the image to the right illustrates the Aegilops species occupy most of the basal branch points in bread wheat evolution indicating that Triticum genus evolved from Aegilops after an estimated 4 million years ago.[3] The divergence of the genomes is followed by allotetraploidation of a speltoid goatgrass x basal wheat species Triticum boeoticum with populations in the middle eastern region giving rise to cultivated emmer wheat.[4]
Hexaploidation of tetraploid wheat
Hybridization of tetraploid wheat with Ae. tauschii produced a hulled wheat similar to spelt, suggesting T. spelta is basal. The tauschii species can be subdivided into subspecies tauschii (eastern Turkey to China or Pakistan) and strangulata (Caucasus to S. Caspian, N. Iran). The D genome of bread wheat is closer to strangulata than tauschii. It is suggested that Ae. tauschii. underwent rapid selective evolution prior to combining with tetraploid wheat.
Evolution of distal taxa
While it might be tempting to think that since Hordeum and Triticum were domesticated proximally, that these two crop plants are closely related within Triticeae. Studies in Anatolia now suggest Rye (Secale) was cultivated but not domesticated prior to the holocene, prior to evidence for the cultivation of wheat, but as climate changed the favorablitiy of Secale declined. The Secale may be a very early branch from the goat grass clad or goat grasses are a branch of early rye grasses, as branch these are almost contemporary with the branching between monoploid wheat and Aegilops tauschii.
More distantly related are the Australian wheatgrasses. One of the earliest branches in Triticeae produces the Psuedoroegeneria (Genome = StSt) and Hordeum (Genome = HH) genera, and allotetraploid crosses with Hordeum and are seen in Elmyus (HHStSt),[5] but also shows introgression from Australian and Agropyron wheatgrasses.[6] Elymus contains mostly Psuedoroegeneria mtDNA.[7] Like other polyploid genomic Triticeae, Elymus represents also a number of prospective cultivars. Thus Hordeum cultivatable properties are not necessarily tied to the middle east or wheat domestication, and its relatively early branchpoint relative to Aegilopoides and derivatives indicate relatively independent evolution for millions of years.
Triticeae glutens examines of the proteins of Triticeae, important in the link between gluten, gastrointestinal, allergic and autoimmune diseases that are primarily focused on the glutens of Wheat, Rye and Barley, but may also be triggered by similar proteins in Aveneae species or subspecies.[8] Some of the recently discovered biochemical and immunochemical properties of these proteins suggest they evolved for protection against dedicated or continuous consumption by mammalian seed eaters.[9][10] One recent publication even begs the question is wheat safe for anyone to eat?[11] Overlapping properties with regard to food preparation have made these proteins much more useful as cereal cultivars and a balanced perspective suggest a variable tolerance to Triticeae glutens reflects early childhood environment and genetic predisposition.
Bread wheat stands out in this regard because it contains a larger proportion of these proteins which make it facilitative for bread making, but also with more 'pathogenic' isoforms resulting from many loci on three genomes, A,B, and D. Triciticeae domestication demostrates the benefit of increasing genomes as a means of enriching certain seed qualities. The process also benefits the reduction of genes that interfere with industrial processing. The creation a polyploids is not difficult so much as picking the right two cultivars to cross. The Aegilopoidic species indicate that cultivating and selecting grasses prior to crossing (removing the undesirable traits in both stains) is one possibly way to simplify selection on the allopolyploid products.
Wild Triticeae Use
Intense use of wild Triticeae' can be seen in the Levant as early as 23,000 years ago.[12] This site, Ohala II (Israel), also shows that Triticeae grains were processed and cooked.[13] Many cultivars appear to have been domesticated in the region of the upper Fertile Crescent, Levant and central Anatolia.[14][15]
Pastoral Grasses
Triticeae has a pastoral component that some contend goes back to the Neolithic period and is referred to as the Garden Hunting Hypothesis. In this hypothesis grains could be planted or shared for the purpose of attracting game animals so that they could be hunted close to settlements.
Today, rye and other Triticeae cultivars are used to grazing animals, particularly cattle. Rye grasses in the New World have been used to selectively for use as fodder, but also to protect grasslands without the introduction of invasive old world species.
Triticeae and health
Glutens (storage proteins) in the Triticeae tribe have been linked with certainty to coeliac disease, certain complex allergic reactions and controversaly to other conditions. See Triticeae glutens for more detail.
References
- ^ Eadie M (2004). "Ergot of rye-the first specific for migraine". J Clin Neurosci. 11 (1): 4–7. PMID 14642357.
- ^ Kubo N, Salomon B, Komatsuda T, von Bothmer R, Kadowaki K (2005). "Structural and distributional variation of mitochondrial rps2 genes in the tribe Triticeae (Poaceae)". Theor Appl Genet. 110 (6): 995–1002. PMID 15754209.
{{cite journal}}: CS1 maint: multiple names: authors list (link) - ^ Dvorak J, Akhunov ED, Akhunov AR, Deal KR, and Luo MC (2006). "Molecular characterization of a diagnostic DNA marker for domesticated tetraploid wheat provides evidence for gene flow from wild tetraploid wheat to hexaploid wheat". Mol Biol Evol. 23 (7): 1386–1396. PMID 16675504.
{{cite journal}}: CS1 maint: multiple names: authors list (link) - ^ >Heun M, Schäfer-Pregl R, Klawan D, Castagna R, Accerbi M, Borghi B, and Salamini F (1997). "Site of Einkorn Wheat Domestication Identified by DNA Fingerprinting". Science. 278 (5341): 1312–1314.
{{cite journal}}: CS1 maint: multiple names: authors list (link) - ^ Mason-Gamer R (2004). "Reticulate evolution, introgression, and intertribal gene capture in an allohexaploid grass". Syst Biol. 53 (1): 25–37. PMID 14965898.
- ^ Liu Q, Ge S, Tang H, Zhang X, Zhu G, Lu B (2006). "Phylogenetic relationships in Elymus (Poaceae: Triticeae) based on the nuclear ribosomal internal transcribed spacer and chloroplast trnL-F sequences". New Phytol. 170 (2): 411–20. PMID 16608465.
{{cite journal}}: CS1 maint: multiple names: authors list (link) - ^ Mason-Gamer R, Orme N, Anderson C (2002). "Phylogenetic analysis of North American Elymus and the monogenomic Triticeae (Poaceae) using three chloroplast DNA data sets". Genome. 45 (6): 991–1002. PMID 12502243.
{{cite journal}}: CS1 maint: multiple names: authors list (link) - ^ Silano M, Dessì M, De Vincenzi M, Cornell H (2007). "In vitro tests indicate that certain varieties of oats may be harmful to patients with coeliac disease". J. Gastroenterol. Hepatol. 22 (4): 528–31. doi:10.1111/j.1440-1746.2006.04512.x. PMID 17376046.
{{cite journal}}: CS1 maint: multiple names: authors list (link) - ^ Mamone G, Ferranti P, Rossi M; et al. (2007). "Identification of a peptide from alpha-gliadin resistant to digestive enzymes: Implications for celiac disease". doi:10.1016/j.jchromb.2007.05.009. PMID 17544966.
{{cite journal}}: Cite journal requires|journal=(help); Explicit use of et al. in:|author=(help)CS1 maint: multiple names: authors list (link) - ^ Shan L, Qiao SW, Arentz-Hansen H; et al. (2005). "Identification and analysis of multivalent proteolytically resistant peptides from gluten: implications for celiac sprue". J. Proteome Res. 4 (5): 1732–41. doi:10.1021/pr050173t. PMID 16212427.
{{cite journal}}: Explicit use of et al. in:|author=(help)CS1 maint: multiple names: authors list (link) - ^ Bernardo D, Garrote JA, Fernández-Salazar L, Riestra S, Arranz E (2007). "Is gliadin really safe for non-coeliac individuals? Production of interleukin 15 in biopsy culture from non-coeliac individuals challenged with gliadin peptides". Gut. 56 (6): 889–90. doi:10.1136/gut.2006.118265. PMID 17519496.
{{cite journal}}: CS1 maint: multiple names: authors list (link) - ^ Weiss E, Wetterstrom W, Nadel D, Bar-Yosef O (2004). "The broad spectrum revisited: evidence from plant remains". Proc Natl Acad Sci U S A. 101 (26): 9551–5. PMID 15210984.
{{cite journal}}: CS1 maint: multiple names: authors list (link) - ^ Piperno D, Weiss E, Holst I, Nadel D (2004). "Processing of wild cereal grains in the Upper Palaeolithic revealed by starch grain analysis". Nature. 430 (7000): 670–3. PMID 15295598.
{{cite journal}}: CS1 maint: multiple names: authors list (link) - ^ Lev-Yadun S, Gopher A, and Abbo S (2000). "(ARCHAEOLOGY:Enhanced:) The Cradle of Agriculture". Science. 288 (5471): 1602–1603.
{{cite journal}}: CS1 maint: multiple names: authors list (link) - ^ Weiss E, Kislev ME, and Hartmann A (2006). "(Perspectives-Anthropology:) Autonomous Cultivation Before Domestication". Science. 312 (5780): 1608–1610.
{{cite journal}}: CS1 maint: multiple names: authors list (link)
Links
Pubmed:Triticeae
Database of Edible Seed Plants
International Center for Agricultural Research in the Dry Areas (ICARDA) - An excellent resource for the ancestral genetics of Triticeae.
Aegilops (genome) Comparative Classification Table
Triticum (genome)Comparative Classification Table
Genomes in Aegilops, Triticum, and Amblyopyrum