Simian immunodeficiency virus: Difference between revisions

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|caption=Phylogenetic relations between simian immunodeficiency viruses (SIVs) <ref>{{cite journal|last1=Sharp, et.al|first1=Paul|title=Origins of HIV and the AIDS Epidemic|journal=Cold Spring Harb Perspect Med|date=Sept 2011|volume=1|issue=1|doi=10.1101/cshperspect.a006841|url=https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3234451/}}</ref><ref>{{cite journal|last1=Ahuka-Mundeke, et.al|first1=Steve|title=Novel Multiplexed HIV/Simian Immunodeficiency Virus Antibody Detection Assay|journal=Emerg Infect Dis|date=Dec 2011|volume=17|issue=12|pages=2277-2286|doi=10.3201/eid1712.110783|pmid=PMC3311211|url=https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3311211/}}</ref><ref>{{cite book|last1=Pancino, et.al.|first1=Gianfranco|title=Models of Protection Against HIV/SIV: Avoiding AIDS in Humans and Monkeys|date=2012|publisher=Elsevier|isbn=978-0-12-387715-4|page=6}}</ref><ref>{{cite journal|last1=Peeters et.al|first1=Martine|title=Risk to Human Health from a Plethora of Simian Immunodeficiency Viruses in Primate Bushmeat|journal=Emerg Infect Dis|date=May 2002|volume=8|issue=5|pages=451-7 Fig 2|doi=10.3201/eid0805.01-0522|pmid=PMC2732488|url=https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2732488/}}</ref>
|caption=Phylogenetic relations between simian immunodeficiency viruses (SIVs) <ref>{{cite journal|last1=Sharp, et.al|first1=Paul|title=Origins of HIV and the AIDS Epidemic|journal=Cold Spring Harb Perspect Med|date=Sept 2011|volume=1|issue=1|doi=10.1101/cshperspect.a006841|url=https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3234451/}}</ref><ref>{{cite journal|last1=Ahuka-Mundeke, et.al|first1=Steve|title=Novel Multiplexed HIV/Simian Immunodeficiency Virus Antibody Detection Assay|journal=Emerg Infect Dis|date=Dec 2011|volume=17|issue=12|pages=2277-2286|doi=10.3201/eid1712.110783|pmid=PMC3311211|url=https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3311211/}}</ref><ref>{{cite book|last1=Pancino, et.al.|first1=Gianfranco|title=Models of Protection Against HIV/SIV: Avoiding AIDS in Humans and Monkeys|date=2012|publisher=Elsevier|isbn=978-0-12-387715-4|page=6}}</ref><ref>{{cite journal|last1=Peeters et.al|first1=Martine|title=Risk to Human Health from a Plethora of Simian Immunodeficiency Viruses in Primate Bushmeat|journal=Emerg Infect Dis|date=May 2002|volume=8|issue=5|pages=451-7 Fig 2|doi=10.3201/eid0805.01-0522|pmid=PMC2732488|url=https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2732488/}}</ref><ref>{{cite journal|last1=Lauck, et.al|first1=M|title=Discovery and full genome characterization of two highly divergent simian immunodeficiency viruses infecting black-and-white colobus monkeys (Colobus guereza) in Kibale National Park, Uganda.|journal=Retrovirology|date=Oct 21, 2013|volume=10|page=107|doi=10.1186/1742-4690-10-107|pmid=24139306|url=https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4016034/}}</ref>
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Revision as of 20:06, 11 December 2016

Simian immunodeficiency virus
Virus classification
Group:
Group VI (ssRNA-RT)
Order:
Unassigned
Family:
Retroviridae
Subfamily:
Orthoretrovirinae
Genus:
Lentivirus
Species:
Simian immunodeficiency virus

Simian immunodeficiency viruses (SIVs) are retroviruses that cause persistent infections in at least 45 species of African non-human primates.[1][2] Based on analysis of strains found in four species of monkeys from Bioko Island, which was isolated from the mainland by rising sea levels about 11,000 years ago, it has been concluded that SIV has been present in monkeys and apes for at least 32,000 years, and probably much longer.[3][4]

Virus strains from two of these primate species, SIVsmm in sooty mangabeys and SIVcpz in chimpanzees, are believed to have crossed the species barrier into humans, resulting in HIV-2 and HIV-1, respectively. The most likely route of transmission of HIV-1 to humans involves contact with the blood of chimps that are often hunted for bushmeat in Africa.[3]

Unlike HIV-1 and HIV-2 infections in humans, SIV infections in their natural hosts appear in many cases to be non-pathogenic. Extensive studies in sooty mangabeys have established that SIVsmm infection does not cause any disease in these animals, despite high levels of circulating virus. However, if this virus infects an Asian or Indian rhesus macaque, the animal will develop simian AIDS (SAIDS).[5] A recent study of SIVcpz in wild living chimpanzees suggests that infected chimpanzees experience an AIDS-like illness similar to HIV-1 infected humans. The later stages of SIV infection turn into SAIDS, much as HIV infection turns into AIDS.

Taxonomy

The ICTVdB code of SIV is 61.0.6.5.003.[6]

While human immunodeficiency virus has a limited number of subtypes, SIV is now known to infect a few dozen species of non-human primates, and distinct strains are often associated with each species, or with a set of closely related species. The thus far categorized ~40 strains are divided into 6 distinct groups:

  • i) HIV-1, SIVcpz (chimpanzee), SIVgor (gorilla), SIVrcm, SIVagi, SIVmnd 2, SIVdrl
  • ii) HIV-2, SIVsmm (Sooty Mangaby), SIVmac (Macaque), SIVmne, SIVstm
  • iii) SIVagm (African Green Monkey)
  • iv) SIVmnd 1 (Mandrill), SIVlho (l'hoest's monkey), SIVsun (sun-tailed monkey), SIVwrc, SIVolc (olive colobus)
  • v) SIVsyk (Syke's monkey), SIVdeb (De Brazza's monkey), SIVden (Dent's mona monkey), SIVgsn/SIVmon/SIVmus 1/SIVmus 2 clade, SIVtal
  • vi) SIVcol (guereza colobus), SIVkcol 1, SIVkcol 2

Identified but not categorized: SIVasc, SIVbkm, SIVblc, SIVery, SIVgri, SIVkrc, SIVprg, SIVreg, SIVsab, SIVtan, SIVtrc, SIVver, SIVwol, .

 
 
 
 grp i 
 
 
 
 

HIV-1

 

cpzPtt

 

gor

 

cpzPts

 
 
 

drl

 

mnd2

 

rcm

 grp ii 

agm

 grp iii 
 
 

HIV-2

 

mac

 

smm

 grp v 
 
 
 
 
 

gsm

 

mus2

 

mon

 

mus1

 

tal

 

deb

 
 

den

 

syk

 grp iv 
 
 

lho

 

sun

 

mnd1

 
 

wrc

 

olc

 grp vi 
 
 

col

 

kcol1

 

kcol2

Phylogenetic relations between simian immunodeficiency viruses (SIVs) [7][8][9][10][11]

History

Immunodeficiency resembling human AIDS was reported in captive monkeys in the United States beginning in 1983.[12][13][14] SIV was isolated in 1985 from some of these animals, captive rhesus macaques suffering from simian AIDS (SAIDS).[13] The discovery of SIV was made shortly after HIV-1 had been isolated as the cause of AIDS and led to the discovery of HIV-2 strains in West Africa. HIV-2 was more similar to the then-known SIV strains than to HIV-1, suggesting for the first time the simian origin of HIV. Further studies indicated that HIV-2 is derived from the SIVsmm strain found in sooty mangabeys, whereas HIV-1, the predominant virus found in humans, is derived from SIV strains infecting chimpanzees (SIVcpz).

Chimpanzees are not believed to be the original hosts of an independent lineage of SIV, but rather that SIVcpz is a relatively recent acquisition resulting from a recombination of SIVgsn (greater spot-nosed monkeys) and SIVrcm (red-capped mangabeys) within the host chimpanzee. It is known that chimpanzees hunt and consume these monkeys for food.[15]

In 2010, researchers reported that SIV had infected monkeys in Bioko for at least 32,000 years. Based on molecular clock analyses of sequences, it was previously thought by many that SIV infection in monkeys had happened over the past few hundred years.[16] Scientists estimated that it would take a similar amount of time before humans would adapt naturally to HIV infection in the way monkeys in Africa have adapted to SIV and not suffer any harm from the infection.[17]

Tropism

Differences in species specificity of SIV and related retroviruses may be partly explained by variants of the protein TRIM5α in humans and non-human primate species. This intracellular protein recognizes the capsid of various retroviruses and blocks their reproduction. Other proteins such as APOBEC3G/3F may also be important in restricting cross-species transmission.[18]

Beatrice Hahn of the University of Pennsylvania and a team of researchers in 2009 found that chimpanzees do die from simian AIDS in the wild and that the AIDS outbreak in Africa has contributed to the decline of chimpanzee populations. Testing wild chimpanzees, researchers detected organ and tissue damage similar to late-stage human AIDS. The infected chimpanzees had a 10 to 16 times greater risk of dying than uninfected ones; infected females were less likely to give birth, could pass the virus to their infants, and had a higher infant mortality rate than uninfected females.[19][20] Bonobos appear to avoid simian immunodeficiency virus (SIV) and its effects, though it is not known why.[21]

Vaccine Research

SHIV, a virus combining parts of the HIV and SIV genomes, was created for various research purposes, including analyzing how different parts of the virus respond to different antimicrobial drugs and vaccines.[22]

In 2012, researchers reported that initial infection of rhesus monkeys by neutralization-resistant SIV strains[23] could be partially prevented through use of an anti-SIVSME543 vaccine obligately including Env protein antigens.[24]

In 2013, a study by a group of authors reported on successful testing of a vaccine containing SIV protein-expressing rhesus cytomegalovirus vector. Approximately 50% of vaccinated rhesus macaques manifested durable, aviraemic control of infection with the highly pathogenic strain SIVmac239.[25]

See also

References

  1. ^ Peeters, M.; Courgnaud, V.; Abela, B. (2001). "Genetic Diversity of Lentiviruses in Non-Human Primates". AIDS Reviews. 3: 3–10. Retrieved 2010-09-19.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  2. ^ Peeters, M.; Courgnaud, V. (2002). "Overview of Primate Lentiviruses and their Evolution in Non-human Primates in Africa" (PDF). In C. Kuiken; B. Foley; E. Freed; B. Hahn; B. Korber; P. A. Marx; F. E. McCutchan; J. W. Mellors; S. Wolinsky (eds.). HIV sequence compendium. Los Alamos, NM: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory. pp. 2–23. Retrieved 2010-09-19Template:Inconsistent citations {{cite book}}: Missing or empty |title= (help)CS1 maint: postscript (link)
  3. ^ a b Donald G. McNeil, Jr. (September 16, 2010). "Precursor to H.I.V. Was in Monkeys for Millennia". New York Times. Retrieved 2010-09-17. In a discovery that sheds new light on the history of AIDS, scientists have found evidence that the ancestor to the virus that causes the disease has been in monkeys and apes for at least 32,000 years — not just a few hundred years, as had been previously thought. ... That means humans have presumably been exposed many times to S.I.V., the simian immunodeficiency virus, because people have been hunting monkeys for millenniums, risking infection every time they butcher one for food.
  4. ^ Worobey, Michael; Telfer, Paul; Souquière, Sandrine; Hunter, Meredith; Coleman, Clint A.; Metzger, Michael J.; Reed, Patricia; Makuwa, Maria; Hearn, Gail (2010). "Island Biogeography Reveals the Deep History of SIV". Science. 329 (5998): 1487. Bibcode:2010Sci...329.1487W. doi:10.1126/science.1193550. PMID 20847261..
  5. ^ Kestler, H.; Kodama, T.; Ringler, D.; Marthas, M.; Pedersen, N.; Lackner, A.; Regier, D.; Sehgal, P.; Daniel, M.; King, N.; Et, A. (1990). "Induction of AIDS in rhesus monkeys by molecularly cloned simian immunodeficiency virus". Science. 248 (4959): 1109–1112. doi:10.1126/science.2160735. PMID 2160735.
  6. ^ ICTV database entry: 61.0.6.5.003
  7. ^ Sharp, Paul; et al. (Sept 2011). "Origins of HIV and the AIDS Epidemic". Cold Spring Harb Perspect Med. 1 (1). doi:10.1101/cshperspect.a006841. {{cite journal}}: Check date values in: |date= (help); Explicit use of et al. in: |last1= (help)
  8. ^ Ahuka-Mundeke, Steve; et al. (Dec 2011). "Novel Multiplexed HIV/Simian Immunodeficiency Virus Antibody Detection Assay". Emerg Infect Dis. 17 (12): 2277–2286. doi:10.3201/eid1712.110783. PMID PMC3311211. {{cite journal}}: Check |pmid= value (help); Explicit use of et al. in: |last1= (help)
  9. ^ Pancino, Gianfranco; et al. (2012). Models of Protection Against HIV/SIV: Avoiding AIDS in Humans and Monkeys. Elsevier. p. 6. ISBN 978-0-12-387715-4. {{cite book}}: Explicit use of et al. in: |last1= (help)
  10. ^ Peeters, Martine; et al. (May 2002). "Risk to Human Health from a Plethora of Simian Immunodeficiency Viruses in Primate Bushmeat". Emerg Infect Dis. 8 (5): 451-7 Fig 2. doi:10.3201/eid0805.01-0522. PMID PMC2732488. {{cite journal}}: Check |pmid= value (help); Explicit use of et al. in: |last1= (help)
  11. ^ Lauck, M; et al. (Oct 21, 2013). "Discovery and full genome characterization of two highly divergent simian immunodeficiency viruses infecting black-and-white colobus monkeys (Colobus guereza) in Kibale National Park, Uganda". Retrovirology. 10: 107. doi:10.1186/1742-4690-10-107. PMID 24139306. {{cite journal}}: Explicit use of et al. in: |last1= (help)CS1 maint: unflagged free DOI (link)
  12. ^ Letvin, N.; Eaton, K.; Aldrich, W.; Sehgal, P.; Blake, B.; Schlossman, S.; King, N.; Hunt, R. (1983). "Acquired immunodeficiency syndrome in a colony of macaque monkeys". Proceedings of the National Academy of Sciences of the United States of America. 80 (9): 2718–2722. Bibcode:1983PNAS...80.2718L. doi:10.1073/pnas.80.9.2718. PMC 393899. PMID 6221343.
  13. ^ a b Daniel, M. D.; Letvin, N. L.; King, N. W.; Kannagi, M.; Sehgal, P. K.; Hunt, R. D.; Kanki, P. J.; Essex, M.; Desrosiers, R. C. (1985). "Isolation of T-cell tropic HTLV-III-like retrovirus from macaques". Science. 228 (4704): 1201–1204. Bibcode:1985Sci...228.1201D. doi:10.1126/science.3159089. PMID 3159089.
  14. ^ King, N. W.; Hunt, R. D.; Letvin, N. L. (1983). "Histopathologic changes in macaques with an acquired immunodeficiency syndrome (AIDS)". The American Journal of Pathology. 113 (3): 382–388. PMC 1916356. PMID 6316791.
  15. ^ Sharp; et al. (Dec. 2016). "Simian Immunodeficiency Virus Infection of Chimpanzees". Journal of Virology. 90 (24). {{cite journal}}: Check date values in: |date= (help); Explicit use of et al. in: |first1= (help)
  16. ^ McNeil Jr, Donald (17 September 2010). "Precursor to H.I.V. Was in Monkeys for Millenniums". The New York Times. Retrieved 17 September 2010.
  17. ^ "HIV precursor in monkeys ancient: study". CBC News. 17 September 2010. Archived from the original on March 25, 2013. Retrieved 17 September 2010. {{cite web}}: Unknown parameter |deadurl= ignored (|url-status= suggested) (help)
  18. ^ Jonathan L. Heeney; Angus G. Dalgleish; Robin A. Weiss (July 2006). "Origins of HIV and the evolution of resistance to AIDS" (PDF). Science. 313 (5786): 462–466. Bibcode:2006Sci...313..462H. doi:10.1126/science.1123016. PMID 16873637.
  19. ^ Chimpanzees Do Die From Simian AIDS, Study Finds by Lawrence K. Altman Chimpanzees Do Die from Simian AIDS, Study Finds
  20. ^ Keele BF, Jones JH, Terio KA et al. Increased mortality and AIDS-like immunopathology in wild chimpanzees infected with SIVcpz. Nature 2009; 460: 515-519
  21. ^ Paul M. Sharp; George M. Shaw; Beatrice H. Hahn (April 2005). "Simian Immunodeficiency Virus Infection of Chimpanzees". Journal of Virology. pp. 3891–3902.
  22. ^ e., L.; Srinivasan, P.; m., J. (2012). "Simian-Human Immunodeficiency Viruses and Their Impact on Non-Human Primate Models for AIDS". Immunodeficiency. doi:10.5772/53556. ISBN 978-953-51-0791-0.
  23. ^ "Neutralization-resistant" refers to strains which are not able to be neutralized by the native immune response due to compensating mutation; see HIV-1 related information.
  24. ^ Barouch, Dan H.; et al. (25 additional authors) (4 Jan 2012), "Vaccine protection against acquisition of neutralization-resistant SIV challenges in rhesus monkeys", Nature, 482, advance online publication, Bibcode:2012Natur.482...89B, doi:10.1038/nature10766, retrieved 6 Jan 2012{{citation}}: CS1 maint: numeric names: authors list (link). Lay summary available from Bloomberg at "J&J AIDS Vaccine Protects Monkeys in Study as Testing in Humans Begins", published 4 Jan 2012.
  25. ^ Hansen, Scott G.; et al. (2013). "Immune clearance of highly pathogenic SIV infection". Nature. 502 (7469): 100–104. doi:10.1038/nature12519.

Further reading

External links

Wikimedia Commons has media related to Simian immunodeficiency virus (SIV) protease.
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