FK Khujand was established in 1976 on basis of a team known as Pomir which was previously known as Miner. The first head coach of the team was Vladimir Burin. FK Khujand competed in Central Asian Championship B League for 15 years. FK Khujand held home matches in Spartak Stadium which was located in the heart of the city. The best performance of FK Khujand in this competition were 8th place in 1983 and 1986 runners-up in 1990 and third place finish in 1991. Since independence of Tajikistan from USSR, FK Khujand has won the Tajik Cup on three occasions 1998, 2002 and 2008.