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Prof. Dr. Melik Demirel holds a tenured associate professor position in engineering at [[Penn State]], and has a decade of experience in biosensors and nanomaterials. Prof. Demirel’s achievements have been recognized, in part, through his receipt of a Young Investigator Award, an Alexander von Humboldt Fellowship, an Institute for Complex Adaptive Matter Junior Fellowship, the Pearce Development Professorship at Penn State, a Boeing Distinguished Speaker Award. Prof. Demirel received his Ph.D. from [[Carnegine Mellon University]] and M.S.&B.S. degrees from [[Bogazici University]].
[[File:melikdemirel.gif]]Prof. Dr. Melik Demirel holds a tenured associate professor position in engineering at [[Penn State]], and has a decade of experience in biosensors and nanomaterials. Prof. Demirel’s achievements have been recognized, in part, through his receipt of a Young Investigator Award, an Alexander von Humboldt Fellowship, an Institute for Complex Adaptive Matter Junior Fellowship, the Pearce Development Professorship at Penn State, a Boeing Distinguished Speaker Award. Prof. Demirel received his Ph.D. from [[Carnegine Mellon University]] and M.S.&B.S. degrees from [[Bogazici University]].


Revision as of 12:09, 9 February 2010

Prof. Dr. Melik Demirel holds a tenured associate professor position in engineering at Penn State, and has a decade of experience in biosensors and nanomaterials. Prof. Demirel’s achievements have been recognized, in part, through his receipt of a Young Investigator Award, an Alexander von Humboldt Fellowship, an Institute for Complex Adaptive Matter Junior Fellowship, the Pearce Development Professorship at Penn State, a Boeing Distinguished Speaker Award. Prof. Demirel received his Ph.D. from Carnegine Mellon University and M.S.&B.S. degrees from Bogazici University.


His research

Soft Nanofiber Films[1]
Dynamics of Biomolecules[2]
Foldable Soft Nano films[3]

His Publications

Hydrogen Generation on Composite Cobalt/Parylene Films.[4]

Anistropic Wetting of Nanostructured Parylene Films.[5]

Highly Swellable Free-Standing Hydrogel Nanotubes Forest.[6]

Temperature-Dependent Wettability on Nanostructured Parylene Films.[7]

Nanostructured Parylene-templated Substrates for Viral Gene Detection.[8]

Control of Protein Adsorption on Nanostructured Parylene Films.[9]

Urine Analysis of Diabetic Patients by Surface Enhanced Raman Spectroscopy.[10]

Non-covalent Route for Controlled Morphology of Electroless Metal Films.[11]

Template-based and Template-free Oblique Angle Polymerization.[12]

Mechanical anisotropy of nanostructured parylene films during sliding contacts.[13]

Control of protein adsorption onto core-shell tubular and vesicular structures of diphenylalanine/Parylene.[14]

Bio-Organism Sensing Via Surface Enhanced Raman Spectroscopy on Controlled Metal/Polymer Nanostructured Substrates.[15]

Electroless deposition of Titania on Nanostructured Parylene Thin Films.[16]

Bridging Experiments and Simulations in Oblique Angle Polymerization.[17]

Surface Biofunctionalization of Nanostructured GeSbSe Chalcogenide Glass Thin Films.[18]

A Template-Free Method of Creating Nanostructured Polymers.[19]

Surface Enhanced Raman Detection of Bacteria on Metalized Nanostructured Poly(p-xylylene) Films.[20]

Catalytic activity of cobalt deposited on nanostructured Poly(p-xylylene) films.[21]

Emergent Properties of Spatially Organized Poly(P-xylylene) Films Fabricated by Vapor Deposition.[22]

Molecular dynamics simulation of long-chain carbocyanine dyes in a DPPC lipid bilayer.[23]

Power-Law Scaling of Structured Poly(P-Xylylene) Films Deposited by Oblique Angle.[24]

A Non-Covalent Method for Depositing Nanoporous Metals via Spatially Organized Poly(P-xylylene) Films.[25]

High resolution deformation and damage detection using fluorescent dyes.[26]

Controlling the Wettability and Adhesion of Nanostructured Poly-(p-xylylene) Films.[27]

Growth of Nanostructured Thin Films of Poly(p-xylylene) Derivatives by Vapor Deposition.[28]

Spatially Organized Free-Standing Poly(P-xylylene) Nanowires Fabricated by Vapor Deposition.[29]

Emerging Directions in Sculptured Thin Film Research.[30]

Nanoengineered Sculptured Thin Films for Fibroblast Cell Attachment and Growth.[31]

How do insertions affect Green Fluorescent Protein.[32]

Protein Interactions and Fluctuations in a Proteomic Network using an Elastic Network Model.[33]

Clustering and Diversity of Fluctuations for Proteins.[34]

Growth of Sculptured Polymer Nanowire Assemblies by Combined Chemical and Physical Vapor Deposition.[35]

Molecular Forces in Antibody Maturation.[36]

Modeling Microstructure Evolution in 3 Dimensions with Grain3D and LaGriT.[37]

Bridging Experiments and Simulations in Microstructural Evolution.[38]

Linking Experimental Characterization and Computational Modeling of Grain Growth in Al-Foil.[39]

Anisotropy of Fluctuation Dynamics of Protein with an Elastic Network Model.[40]

Relating Structure to Function through the Dominant Modes of Motion of DNA Topoisomerase II.[41]

Identification of Kinetically Hot Residues in Proteins.[42]

Vibrational Dynamics of Folded Proteins: Significance of Slow and Fast Motions in Relation to Function and Stability.[43]

Dynamics of Disordered Structures: Effect of Nonlinearity on the Localization.[44]

Statistical Mechanics of Fermi-Pasta-Ulam Chains with the Canonical Ensemble.[45]



References

  1. ^ http://www.personal.psu.edu/mcd18/biomol.html
  2. ^ http://www.personal.psu.edu/mcd18/enm.html
  3. ^ http://www.personal.psu.edu/mcd18/foldable.html
  4. ^ Sekeroglu, K., Malvadkar N., Demirel, M.C., "Hydrogen Generation on Composite Cobalt/Parylene Films", submitted, 2010
  5. ^ Demirel, G., Malvadkar, N., Dressick, W.J, Demirel, M.C., “Anistropic Wetting of Nanostructured Parylene Films”, submitted, 2010
  6. ^ Gozde I., Demirel, G, Gleason, K.K, Demirel, M.C., “Highly Swellable Free-Standing Hydrogel Nanotubes Forest”, submitted, 2010
  7. ^ Demirel, G., Malvadkar, N., Demirel, M.C., “Temperature-Dependent Wettability on Nanostructured Parylene Films”, submitted, 2010
  8. ^ Malvadkar, N., Demirel, G., Kao, P., Poss, M., Allara, D.L., Javed, A., Demirel M.C., “Nanostructured Parylene-templated Substrates for Viral Gene Detection”, submitted , 2010
  9. ^ Demirel, G., Malvadkar, N., Demirel, M.C., “Control of Protein Adsorption on Nanostructured Parylene Films”, submitted, 2010
  10. ^ Wang, H., Kao, P., Bylander, J., Reeves, W.B., Demirel, M.C., “Urine Analysis of Diabetic Patients by Surface Enhanced Raman Spectroscopy”, JOURNAL of BIOMEDICAL OPTICS, in press, 2010
  11. ^ Malvadkar, N., Sekereoglu, K., Dressick, W.J., Demirel, M.C. “Non-covalent Route for Controlled Morphology of Electroless Metal Films”, LANGMUIR, in press, 2010
  12. ^ Demirel, G., Malvadkar, N., Demirel, M.C., “Template-based and Template-free Oblique Angle Polymerization”, THIN SOLID FILMS, in press, 2010
  13. ^ So, E., Demirel M.C., Wahl, K.J, “Mechanical anisotropy of nanostructured parylene films during sliding contacts”, JOURNAL of PHYSICS-D, vol.43, article no. 045403, 2010
  14. ^ Demirel, G., Malvadkar, N., Demirel, M.C., “Control of protein adsorption onto core-shell tubular and vesicular structures of diphenylalanine/Parylene”, LANGMUIR, vol.26, pg 1460-1463, 2010
  15. ^ Demirel, M.C., Kao, P., Malvadkar, N., Wang, H., Poss, M., Allara, D.L. “Bio-Organism Sensing Via Surface Enhanced Raman Spectroscopy on Controlled Metal/Polymer Nanostructured Substrates”, BIOINTERPHASES, vol.4, pg. 35-41, 2009
  16. ^ Malvadkar, N., Dressick, W.J., Demirel, M.C., "Electroless deposition of Titania on Nanostructured Parylene Thin Films", JOURNAL of MATERIALS CHEMISTRY, Vol.19, pg.4796-4804 , 2009
  17. ^ Cetinkaya, M., Demirel M.C., "Bridging Experiments and Simulations in Oblique Angle Polymerization", J. CHEMICAL VAPOR DEPOSITION, Vol.15, pg. 1-5, 2009
  18. ^ Martin Palma, R, Wang, H., Demirel M.C., Pantano, C., “Surface Biofunctionalization of Nanostructured GeSbSe Chalcogenide Glass Thin Films”, J. NON-CRYSTALLINE SOLIDS, Vol. 355, pg. 208-212, 2009
  19. ^ Malvadkar, N., Mangan, A., Boduroglu, S., Wang, H., Demirel M.C., "A Template-Free Method of Creating Nanostructured Polymers", EUROPEAN COATING JOURNAL, Vol. 1, pg. 40-44, 2009
  20. ^ Kao, P., Malvadkar N., Wang, H., Allara, D.L., Demirel, M.C., “Surface Enhanced Raman Detection of Bacteria on Metalized Nanostructured Poly(p-xylylene) Films” ADVANCED MATERIALS, Vol. 20, pg. 3562-3565, 2008
  21. ^ Malvadkar N., Park, S., Macdonald, M., Wang, H., Demirel, M.C., "Catalytic activity of cobalt deposited on nanostructured Poly(p-xylylene) films", JOURNAL of POWER SOURCES, Vol. 182, pg. 323-328, 2008
  22. ^ Demirel, M.C., “Emergent Properties of Spatially Organized Poly(P-xylylene) Films Fabricated by Vapor Deposition" COLLOIDS AND SURFACES A , Vol. 321, pg. 121-124, 2008
  23. ^ Gullapalli, R., Demirel, M.C., Butler P.J. ” Molecular dynamics simulation of long-chain carbocyanine dyes in a DPPC lipid bilayer”, PHYSICAL CHEMISTRY CHEMICAL PHYSICS, Vol. 10, pg 1-13, 2008
  24. ^ Cetinkaya, M., Malvadkar, N., Demirel, M.C., “Power-Law Scaling of Structured Poly(P-Xylylene) Films Deposited by Oblique Angle”, JOURNAL OF POLYMER SCIENCE PART B: POLYMER PHYSICS, Vol. 46, pg 640-648, 2008
  25. ^ Demirel, M.C., Cetinkaya, M., Singh, A., Dressick W.J., “A Non-Covalent Method for Depositing Nanoporous Metals via Spatially Organized Poly(P-xylylene) Films”, ADVANCED MATERIALS, Vol. 19, pg. 4495-4499, 2007
  26. ^ Samuel, B., Demirel, M.C., Haque, A.M., “High resolution deformation and damage detection using fluorescent dyes”, JOURNAL OF MICROMECHANICS AND MICROENGINEERING, Vol. 17, pg 2324–2327, 2007
  27. ^ Boduroglu, S., Cetinkaya, M., Dressick, W.J., Singh, A., Demirel, M.C., “Controlling the Wettability and Adhesion of Nanostructured Poly-(p-xylylene) Films”, LANGMUIR, Vol. 23, pg 11391-11395, 2007
  28. ^ Cetinkaya, M., Boduroglu, S., Demirel, M.C., "Growth of Nanostructured Thin Films of Poly(p-xylylene) Derivatives by Vapor Deposition“, POLYMER, Vol.48, pg. 4130-4134, 2007
  29. ^ Demirel, M.C., Cetinkaya, M, Boduroglu, S., Lakhtakia, A., “Spatially Organized Free-Standing Poly(P-xylylene) Nanowires Fabricated by Vapor Deposition ”, LANGMUIR, Vol. 23, pg. 5861-5863, 2007
  30. ^ Lakhtakia, A, Demirel, M.C., Horn, M.W., Xu, J, "Emerging Directions in Sculptured Thin Film Research", ADVANCES IN SOLID STATE PHYSICS, Vol. 46, pg 295-307, 2007
  31. ^ Demirel, M.C., So, E., Ritty, T., Naidu, S.H., Lakhtakia, A. “Nanoengineered Sculptured Thin Films for Fibroblast Cell Attachment and Growth,” JOURNAL OF BIOMEDICAL MATERIALS RESEARCH-B, Vol 81B, pg. 219-223, 2007
  32. ^ Cetinkaya, M.C., Zeytun, A., Sofo, J., Demirel, M.C., “How do insertions affect Green Fluorescent Protein”, CHEMICAL PHYSICS LETTERS, Vol. 419, pg. 48-54, 2006
  33. ^ Demirel, M.C., Keskin, O. "Protein Interactions and Fluctuations in a Proteomic Network using an Elastic Network Model", JOURNAL of BIO-MOLECULAR STRUCTURE and DYNAMICS, Vol. 22, Issue 4, pg 381-386, 2005
  34. ^ Demirel, M.C., Cherny, D. "Clustering and Diversity of Fluctuations for Proteins" JOURNAL OF NANOMEDICINE, vol 1, Issue 1, pg. 41-46, March 2005
  35. ^ Pursel, S., Horn, M.W., Demirel, M.C., Lakhtakia, A., “Growth of Sculptured Polymer Nanowire Assemblies by Combined Chemical and Physical Vapor Deposition”, Vol. 46, POLYMER, pg 9544-9548, 2005
  36. ^ Demirel, M.C., Lesk A. “Molecular Forces in Antibody Maturation”, Vol. 95, article no. 208106, PHYSICAL REVIEW LETTERS, 2005
  37. ^ Kuprat A.P., George, D.C., Straub, G.K., Demirel, M.C., "Modeling Microstructure Evolution in 3 Dimensions with Grain3D and LaGriT," Vol. 28, COMPUTATIONAL MATERIALS SCIENCE, 2003, pp 199-208
  38. ^ Demirel, M.C., Kuprat, A.P, George, D.C., and Rollett, A.D., "Bridging Experiments and Simulations in Microstructural Evolution," Vol. 90, Issue 1, PHYSICAL REVIEW LETTERS, 2003, pp 16106
  39. ^ Demirel, M.C., Kuprat, A.P, George, D.C., Straub, G.K. and Rollett, A.D., "Linking Experimental Characterization and Computational Modeling of Grain Growth in Al-Foil," INTERFACE SCIENCE, Vol. 10, Issue 2/3, 2002, pp 137 --142
  40. ^ Atilgan, A.R., Durell, S.R., Jernigan, R.L., Demirel, M. C., Keskin, O., Bahar, I., "Anisotropy of Fluctuation Dynamics of Protein with an Elastic Network Model," BIOPHYSICAL JOURNAL, Vol. 80, No. 1, 2001, pp.505 -- 515
  41. ^ Jernigan, R.L., Demirel, M. C., Bahar, I., "Relating Structure to Function through the Dominant Modes of Motion of DNA Topoisomerase II," INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, Vol. 75, 1999, pp. 301 -- 312
  42. ^ Demirel, M. C., Atilgan, A.R., Jernigan, R L., Erman, B., Bahar, I., "Identification of Kinetically Hot Residues in Proteins," PROTEIN SCIENCE, Vol. 7, No. 12, 1998, pp. 2522 -- 2532
  43. ^ Bahar, I., Atilgan, A.R., Demirel, M. C., Erman, B., "Vibrational Dynamics of Folded Proteins: Significance of Slow and Fast Motions in Relation to Function and Stability," PHYSICAL REVIEW LETTERS, Vol. 80, No. 12, 1998, pp. 2733 -- 2736
  44. ^ Sayar, M., Demirel, M. C., Atilgan, A.R., "Dynamics of Disordered Structures: Effect of Nonlinearity on the Localization," JOURNAL OF SOUND AND VIBRATION, Vol. 205, No. 3, 1997, pp. 372 - 379
  45. ^ Demirel, M. C., Sayar, M., Atilgan, A.R., "Statistical Mechanics of Fermi-Pasta-Ulam Chains with the Canonical Ensemble, " PHYSICAL REVIEW E, Vol. 55, No. 3, 1997, pp. 3727 -- 3731
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