Lukasz Kurgan: Difference between revisions
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{{Autobiography|date=September 2020}} |
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His research focuses on the applications of [[machine learning]] in [[bioinformatics]] and [[structural bioinformatics]] of [[proteins]], with focus on [[intrinsically disordered proteins]], [[structural genomics]], and [[protein function prediction]]. His research was funded by [[National Science Foundation]] (NSF), [[Natural Sciences and Engineering Research Council]] (NSERC), and [[Canadian Institutes of Health Research]] (CIHR).<ref>{{cite web |title=ORCID record for Dr. Lukasz Kurgan |url=https://orcid.org/0000-0002-7749-0314}}</ref> Dr. Kurgan published over 150 articles on topic related to [[bioinformatics]] and [[machine learning]], which have been cited over 12,000 times according to [[Google Scholar]].<ref>{{cite web |title=Google Scholar record for Lukasz Kurgan |url=https://scholar.google.com/citations?user=zXw_54AAAAAJ}}</ref> His research lab has developed popular methods for [[protein function prediction]] and [[protein structure prediction]] including MoRFpred, MFDp, DEPICTER, DRNApred, fDETECT, and DisoRDPbind.<ref>{{cite web |title=Biomine research laboratory |url=http://biomine.cs.vcu.edu/}}</ref> His lab also released the PDID protein-drug interaction database and the DescribePROT protein function database.<ref>{{cite web |title=PDID database website |url=http://biomine.cs.vcu.edu/servers/PDID/}}</ref><ref>{{cite web |title=DescribePROT database website |url=http://biomine.cs.vcu.edu/servers/DESCRIBEPROT/main.php}}</ref> Some of these tools won accolades in international competitions/assessments including the 3 place in disorder prediction at the 2012 Critical Assessment of Techniques for Protein Structure Prediction ([[CASP]])<ref>{{cite journal |title=CASP10 disorder prediction assessment |year=2013|pmc=4406047|last1=Monastyrskyy|first1=B.|last2=Kryshtafovych|first2=A.|last3=Moult|first3=J.|last4=Tramontano|first4=A.|last5=Fidelis|first5=K.|journal=Proteins|volume=82|issue=2|pages=127–137|doi=10.1002/prot.24391|pmid=23946100}}</ref> and the top finish at the 2018 Critical Assessment of Intrinsic protein Disorder (CAID1).<ref>{{cite document |title=2018 CAID disorder prediction assessment |year=2020|doi=10.1101/2020.08.11.245852|url=https://www.biorxiv.org/content/10.1101/2020.08.11.245852v1|last1=Necci|first1=Marco|last2=Piovesan|first2=Damiano|last3=Tosatto|first3=Silvio C.E.|s2cid=221142031}}</ref> |
His research focuses on the applications of [[machine learning]] in [[bioinformatics]] and [[structural bioinformatics]] of [[proteins]], with focus on [[intrinsically disordered proteins]], [[structural genomics]], and [[protein function prediction]]. His research was funded by [[National Science Foundation]] (NSF), [[Natural Sciences and Engineering Research Council]] (NSERC), and [[Canadian Institutes of Health Research]] (CIHR).<ref>{{cite web |title=ORCID record for Dr. Lukasz Kurgan |url=https://orcid.org/0000-0002-7749-0314}}</ref> Dr. Kurgan published over 150 articles on topic related to [[bioinformatics]] and [[machine learning]], which have been cited over 12,000 times according to [[Google Scholar]].<ref>{{cite web |title=Google Scholar record for Lukasz Kurgan |url=https://scholar.google.com/citations?user=zXw_54AAAAAJ}}</ref> His research lab has developed popular methods for [[protein function prediction]] and [[protein structure prediction]] including MoRFpred, MFDp, DEPICTER, DRNApred, fDETECT, and DisoRDPbind.<ref>{{cite web |title=Biomine research laboratory |url=http://biomine.cs.vcu.edu/}}</ref> His lab also released the PDID protein-drug interaction database and the DescribePROT protein function database.<ref>{{cite web |title=PDID database website |url=http://biomine.cs.vcu.edu/servers/PDID/}}</ref><ref>{{cite web |title=DescribePROT database website |url=http://biomine.cs.vcu.edu/servers/DESCRIBEPROT/main.php}}</ref> Some of these tools won accolades in international competitions/assessments including the 3 place in disorder prediction at the 2012 Critical Assessment of Techniques for Protein Structure Prediction ([[CASP]])<ref>{{cite journal |title=CASP10 disorder prediction assessment |year=2013|pmc=4406047|last1=Monastyrskyy|first1=B.|last2=Kryshtafovych|first2=A.|last3=Moult|first3=J.|last4=Tramontano|first4=A.|last5=Fidelis|first5=K.|journal=Proteins|volume=82|issue=2|pages=127–137|doi=10.1002/prot.24391|pmid=23946100}}</ref> and the top finish at the 2018 Critical Assessment of Intrinsic protein Disorder (CAID1).<ref>{{cite document |title=2018 CAID disorder prediction assessment |year=2020|doi=10.1101/2020.08.11.245852|url=https://www.biorxiv.org/content/10.1101/2020.08.11.245852v1|last1=Necci|first1=Marco|last2=Piovesan|first2=Damiano|last3=Tosatto|first3=Silvio C.E.|s2cid=221142031}}</ref> |
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Disclosure: I have contributed to a draft about myself at [[Draft:Lukasz Kurgan]]. |
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== References == |
== References == |
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Revision as of 19:15, 21 November 2020
 | This article is an autobiography or has been extensively edited by the subject or by someone connected to the subject. (September 2020) |
Lukasz Kurgan
| |
|---|---|
| Born | Lukasz Andrzej Kurgan October 4, 1975 Krakow, Poland |
| Nationality | Canadian, Polish |
| Alma mater | University of Colorado at Boulder |
| Scientific career | |
| Fields | Bioinformatics, Machine Learning |
| Institutions | Virginia Commonwealth University (2015–) University of Alberta (2003–2015) University of Colorado at Denver (2002–2003) |
| Thesis | Meta Mining System for Supervised Learning (2003) |
| Website | http://biomine.cs.vcu.edu/ |
Lukasz Kurgan is the Robert J. Mattauch Endowed Professor of Computer Science at the Virginia Commonwealth University, in Richmond, Virginia, U.S.A.[1] He was a Professor at the University of Alberta between 2003 and 2015.[2] Dr. Kurgan earned his Ph.D. in computer science from the University of Colorado at Boulder in 2003 and his M.Sc. degree in automation and robotics from the AGH University of Science and Technology in 1999.[3]
Dr. Kurgan is a Fellow of the American Institute for Medical and Biological Engineering (AIMBE)[4], Fellow of the Kosciuszko Foundation Collegium of Eminent Scientists[5], Senior Member of the International Society for Computational Biology (ISCB)[6], and Senior Member of Association for Computing Machinery (ACM).[7] He serves as the Associate Editor-in-Chief of the Biomolecules journal.[8] He also serves as a member of the Editorial Board of the Bioinformatics (journal).[9]
His research focuses on the applications of machine learning in bioinformatics and structural bioinformatics of proteins, with focus on intrinsically disordered proteins, structural genomics, and protein function prediction. His research was funded by National Science Foundation (NSF), Natural Sciences and Engineering Research Council (NSERC), and Canadian Institutes of Health Research (CIHR).[10] Dr. Kurgan published over 150 articles on topic related to bioinformatics and machine learning, which have been cited over 12,000 times according to Google Scholar.[11] His research lab has developed popular methods for protein function prediction and protein structure prediction including MoRFpred, MFDp, DEPICTER, DRNApred, fDETECT, and DisoRDPbind.[12] His lab also released the PDID protein-drug interaction database and the DescribePROT protein function database.[13][14] Some of these tools won accolades in international competitions/assessments including the 3 place in disorder prediction at the 2012 Critical Assessment of Techniques for Protein Structure Prediction (CASP)[15] and the top finish at the 2018 Critical Assessment of Intrinsic protein Disorder (CAID1).[16]
References
- ^ "Computer Science Faculty at Virginia Commonwealth University".
- ^ "ORCID record for Dr. Lukasz Kurgan".
- ^ "ORCID record for Dr. Lukasz Kurgan".
- ^ "Dr. Lukasz Kurgan Inducted as AIMBE Fellow".
- ^ "Listing of the Kosciuszko Foundation Collegium of Eminent Scientists".
- ^ "ISCB Senior Members".
- ^ "ACM Senior Members".
- ^ "Editorial Board of the Biomolecules journal".
- ^ "Editorial Board of the Bioinformatics journal".
- ^ "ORCID record for Dr. Lukasz Kurgan".
- ^ "Google Scholar record for Lukasz Kurgan".
- ^ "Biomine research laboratory".
- ^ "PDID database website".
- ^ "DescribePROT database website".
- ^ Monastyrskyy, B.; Kryshtafovych, A.; Moult, J.; Tramontano, A.; Fidelis, K. (2013). "CASP10 disorder prediction assessment". Proteins. 82 (2): 127–137. doi:10.1002/prot.24391. PMC 4406047. PMID 23946100.
- ^ Necci, Marco; Piovesan, Damiano; Tosatto, Silvio C.E. (2020). "2018 CAID disorder prediction assessment" (Document). doi:10.1101/2020.08.11.245852.
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