Indel: Difference between revisions
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The word '''indel''' is a [[portmanteau]] of [[insertion (genetics)|insertion]] and [[deletion]], referring to the two types of [[Genetics|genetic]] [[mutation]] that are often considered together because of their similar effect. Unless the length of an indel is a multiple of 3, they produce a [[frameshift mutation]]. The most common mutation causing cystic fibrosis in the [[cystic fibrosis]] transmembrane receptor ([[CFTR]]) gene is a deletion of three bases encoding phenylalanine at position 508 of the protein ([[ΔF508]], or p.F508del). |
The word '''indel''' is a [[portmanteau]] of [[insertion (genetics)|insertion]] and [[deletion]], referring to the two types of [[Genetics|genetic]] [[mutation]] that are often considered together because of their similar effect and the inability to distinguish between them in a comparison of two sequences. Unless the length of an indel is a multiple of 3, they produce a [[frameshift mutation]]. The most common mutation causing cystic fibrosis in the [[cystic fibrosis]] transmembrane receptor ([[CFTR]]) gene is a deletion of three bases encoding phenylalanine at position 508 of the protein ([[ΔF508]], or p.F508del). |
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Indels can be contrasted with a '''[[point mutation]]'''; where an Indel inserts or deletes single nucleotides or whole sections of DNA from a sequence, a substitution only replaces one of the [[nucleotides]]. |
Indels can be contrasted with a '''[[point mutation]]'''; where an Indel inserts or deletes single nucleotides or whole sections of DNA from a sequence, a substitution only replaces one of the [[nucleotides]]. |
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Revision as of 01:20, 31 January 2007
The word indel is a portmanteau of insertion and deletion, referring to the two types of genetic mutation that are often considered together because of their similar effect and the inability to distinguish between them in a comparison of two sequences. Unless the length of an indel is a multiple of 3, they produce a frameshift mutation. The most common mutation causing cystic fibrosis in the cystic fibrosis transmembrane receptor (CFTR) gene is a deletion of three bases encoding phenylalanine at position 508 of the protein (ΔF508, or p.F508del).
Indels can be contrasted with a point mutation; where an Indel inserts or deletes single nucleotides or whole sections of DNA from a sequence, a substitution only replaces one of the nucleotides.
An "indel" change of a single DNA base encoding part of a mRNA results in a "frameshift" when translating the mRNA and perhaps reading on to an inappropriate (premature) stop codon in a different frame. Indels are uncommon in coding regions but common in non-coding regions.
The term "indel" has been co-opted in recent years by genome scientists for use in the sense described above. Note that this is a bastardization from its original use and meaning, which arose from the systematics field, referring to differences between sequences, such as from two different species, in which it was impossible to infer if one species lost the sequence or the other species gained it. For example, species A has a run of 4 G nucleotides at a particular locus, but species B has 5 G's at the same locus. If evolutionary direction is unknown, then it is equally plausible that species A could have lost one G (a "deletion" event") or species B could have gained the G (an "insertion" event). In cases where it is impossible to infer phylogenetic direction of the sequence change, the sequence change event will be referred to as an "indel".