SRRM1

SRRM1
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 1MP1
Identifiers
Aliases	SRRM1, 160-KD, POP101, SRM160, serine and arginine repetitive matrix 1
External IDs	OMIM: 605975; MGI: 1858303; HomoloGene: 136796; GeneCards: SRRM1; OMA:SRRM1 - orthologs
Gene location (Human) Chr. Chromosome 1 (human) Band 1p36.11 Start 24,631,716 bp End 24,673,267 bp
Gene location (Mouse) Chr. Chromosome 4 (mouse) Band 4|4 D3 Start 135,320,484 bp End 135,353,321 bp
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in corpus epididymis sural nerve caput epididymis right uterine tube left ovary buccal mucosa cell right ovary body of uterus tail of epididymis right hemisphere of cerebellum Top expressed in tail of embryo genital tubercle primitive streak Paneth cell abdominal wall neural layer of retina ciliary body Ileal epithelium zygote cumulus cell More reference expression data BioGPS More reference expression data
Gene ontology Molecular function DNA binding protein binding RNA binding Cellular component nuclear matrix cytosol catalytic step 2 spliceosome spliceosomal complex nucleus nucleoplasm nuclear speck Biological process RNA splicing, via transesterification reactions mRNA splicing, via spliceosome termination of RNA polymerase II transcription mRNA processing mRNA 3'-end processing mRNA export from nucleus RNA splicing RNA export from nucleus Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 10250 51796 Ensembl ENSG00000133226 ENSMUSG00000028809 UniProt Q8IYB3 Q52KI8 RefSeq (mRNA) NM_001303448 NM_001303449 NM_005839 NM_001130477 NM_016799 NM_001369067 NM_001369068 NM_001369069 NM_001369070 NM_001369071 NM_001369072 NM_001369073 NM_001369074 RefSeq (protein) NP_001290377 NP_001290378 NP_005830 NP_001353494 NP_001353495 NP_001353496 NP_001353497 NP_001353498 NP_001353499 NP_001353500 NP_001353501 NP_001353502 NP_001353504 NP_001353505 NP_001353506 NP_001353507 NP_001353510 NP_001353511 NP_001353513 NP_001353514 NP_001353515 NP_001353516 NP_001353517 NP_001353518 NP_001353519 NP_001353520 NP_001353521 NP_001353522 NP_001353523 NP_001353524 NP_001353525 NP_001353526 NP_001353527 NP_001353528 NP_001353529 NP_001123949 NP_058079 NP_001355996 NP_001355997 NP_001355998 NP_001355999 NP_001356000 NP_001356001 NP_001356002 NP_001356003 Location (UCSC) Chr 1: 24.63 – 24.67 Mb Chr 4: 135.32 – 135.35 Mb PubMed search
Wikidata
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Serine/arginine repetitive matrix protein 1 is a protein that in humans is encoded by the SRRM1 gene.

Interactions

SRRM1 has been shown to interact with CDC5L.

Further reading

• Wang HY, Lin W, Dyck JA, Yeakley JM, Songyang Z, Cantley LC, Fu XD (1998). "SRPK2: a differentially expressed SR protein-specific kinase involved in mediating the interaction and localization of pre-mRNA splicing factors in mammalian cells". J. Cell Biol. 140 (4): 737–50. doi:10.1083/jcb.140.4.737. PMC 2141757. PMID 9472028.
• Wilson KF, Fortes P, Singh US, Ohno M, Mattaj IW, Cerione RA (1999). "The nuclear cap-binding complex is a novel target of growth factor receptor-coupled signal transduction". J. Biol. Chem. 274 (7): 4166–73. doi:10.1074/jbc.274.7.4166. PMID 9933612.
• Eldridge AG, Li Y, Sharp PA, Blencowe BJ (1999). "The SRm160/300 splicing coactivator is required for exon-enhancer function". Proc. Natl. Acad. Sci. U.S.A. 96 (11): 6125–30. doi:10.1073/pnas.96.11.6125. PMC 26846. PMID 10339552.
• Blencowe BJ, Baurén G, Eldridge AG, Issner R, Nickerson JA, Rosonina E, Sharp PA (2000). "The SRm160/300 splicing coactivator subunits". RNA. 6 (1): 111–20. doi:10.1017/S1355838200991982. PMC 1369899. PMID 10668804.
• Le Hir H, Moore MJ, Maquat LE (2000). "Pre-mRNA splicing alters mRNP composition: evidence for stable association of proteins at exon-exon junctions". Genes Dev. 14 (9): 1098–108. PMC 316578. PMID 10809668.
• McGarvey T, Rosonina E, McCracken S, Li Q, Arnaout R, Mientjes E, Nickerson JA, Awrey D, Greenblatt J, Grosveld G, Blencowe BJ (2000). "The acute myeloid leukemia-associated protein, DEK, forms a splicing-dependent interaction with exon-product complexes". J. Cell Biol. 150 (2): 309–20. doi:10.1083/jcb.150.2.309. PMC 2180225. PMID 10908574.
• Le Hir H, Izaurralde E, Maquat LE, Moore MJ (2000). "The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions". EMBO J. 19 (24): 6860–9. doi:10.1093/emboj/19.24.6860. PMC 305905. PMID 11118221.
• Lykke-Andersen J, Shu MD, Steitz JA (2001). "Communication of the position of exon-exon junctions to the mRNA surveillance machinery by the protein RNPS1". Science. 293 (5536): 1836–9. doi:10.1126/science.1062786. PMID 11546874.
• McCracken S, Lambermon M, Blencowe BJ (2002). "SRm160 splicing coactivator promotes transcript 3'-end cleavage". Mol. Cell. Biol. 22 (1): 148–60. doi:10.1128/MCB.22.1.148-160.2002. PMC 134228. PMID 11739730.
• Szymczyna BR, Pineda-Lucena A, Mills JL, Szyperski T, Arrowsmith CH (2002). "1H, 13C, and 15N resonance assignments and secondary structure of the PWI domain from SRm160 using reduced dimensionality NMR". J. Biomol. NMR. 22 (3): 299–300. doi:10.1023/A:1014904502424. PMID 11991360.
• Jurica MS, Licklider LJ, Gygi SR, Grigorieff N, Moore MJ (2002). "Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis". RNA. 8 (4): 426–39. doi:10.1017/S1355838202021088. PMC 1370266. PMID 11991638.
• Lejeune F, Ishigaki Y, Li X, Maquat LE (2002). "The exon junction complex is detected on CBP80-bound but not eIF4E-bound mRNA in mammalian cells: dynamics of mRNP remodeling". EMBO J. 21 (13): 3536–45. doi:10.1093/emboj/cdf345. PMC 126094. PMID 12093754.
• Meissner M, Lopato S, Gotzmann J, Sauermann G, Barta A (2003). "Proto-oncoprotein TLS/FUS is associated to the nuclear matrix and complexed with splicing factors PTB, SRm160, and SR proteins". Exp. Cell Res. 283 (2): 184–95. doi:10.1016/S0014-4827(02)00046-0. PMID 12581738.
• Szymczyna BR, Bowman J, McCracken S, Pineda-Lucena A, Lu Y, Cox B, Lambermon M, Graveley BR, Arrowsmith CH, Blencowe BJ (2003). "Structure and function of the PWI motif: a novel nucleic acid-binding domain that facilitates pre-mRNA processing". Genes Dev. 17 (4): 461–75. doi:10.1101/gad.1060403. PMC 196000. PMID 12600940.
• Wagner S, Chiosea S, Nickerson JA (2003). "The spatial targeting and nuclear matrix binding domains of SRm160". Proc. Natl. Acad. Sci. U.S.A. 100 (6): 3269–74. doi:10.1073/pnas.0438055100. PMC 152281. PMID 12624182.
• McCracken S, Longman D, Johnstone IL, Cáceres JF, Blencowe BJ (2003). "An evolutionarily conserved role for SRm160 in 3'-end processing that functions independently of exon junction complex formation". J. Biol. Chem. 278 (45): 44153–60. doi:10.1074/jbc.M306856200. PMID 12944400.
• Wagner S, Chiosea S, Ivshina M, Nickerson JA (2004). "In vitro FRAP reveals the ATP-dependent nuclear mobilization of the exon junction complex protein SRm160". J. Cell Biol. 164 (6): 843–50. doi:10.1083/jcb.200307002. PMC 2172284. PMID 15024032.
• Brill LM, Salomon AR, Ficarro SB, Mukherji M, Stettler-Gill M, Peters EC (2004). "Robust phosphoproteomic profiling of tyrosine phosphorylation sites from human T cells using immobilized metal affinity chromatography and tandem mass spectrometry". Anal. Chem. 76 (10): 2763–72. doi:10.1021/ac035352d. PMID 15144186.

External links

• SRRM1 human gene location in the UCSC Genome Browser.
• SRRM1 human gene details in the UCSC Genome Browser.