Computational anatomy toolbox
 | |
| Developer(s) | Structural Brain Mapping Group Christian Gaser Robert Dahnke |
|---|---|
| Stable release | 12.9
/ 25 May 2024 |
| Repository | github |
| Written in | Matlab, C |
| Operating system | Linux, macOS, Windows |
| Platform | MATLAB, SPM |
| Type | Neuroimaging data analysis |
| License | GNU General Public License |
| Website | neuro-jena |
CAT (computational anatomy toolbox) is a free and open source software package used for the analysis of structural brain imaging data, in particular magnetic resonance imaging (MRI)[1]. Developed by Christian Gaser and Robert Dahnke of the Structural Brain Mapping Group at the University of Jena, CAT is an extension of the SPM software.
Functionality
[edit]CAT provides tools for voxel-based morphometry (VBM)[2], cortical thickness[3], folding[4], and gyrification[5] analysis, as well as volume or surface estimates within predefined brain regions of interest.
Related software
[edit]References
[edit]- ^ Gaser C, Dahnke R, Thompson PM, et al. (Aug 2024). "CAT: a computational anatomy toolbox for the analysis of structural MRI data". GigaScience. 13: giae049. doi:10.1093/gigascience/giae049. PMC 11299546. PMID 39102518.
- ^ Ashburner J, Friston KJ (Jun 2000). "Voxel-based morphometry--the methods". NeuroImage. 11 (6): 805–21. doi:10.1006/nimg.2000.0582. PMID 10860804.
- ^ Dahnke R, Yotter RA, Gaser C (Jan 2013). "Cortical thickness and central surface estimation". NeuroImage. 65: 336–48. doi:10.1016/j.neuroimage.2012.09.050. PMID 23041529.
- ^ Yotter RA, Nenadic I, Ziegler G, et al. (Jun 2011). "Local cortical surface complexity maps from spherical harmonic reconstructions". NeuroImage. 56 (3): 961–73. doi:10.1016/j.neuroimage.2011.02.007. PMID 21315159.
- ^ Luders E, Thompson PM, Narr KL, et al. (Jul 2009). "A curvature-based approach to estimate local gyrification on the cortical surface". NeuroImage. 29 (4): 1224–30. doi:10.1016/j.neuroimage.2005.08.049. PMID 16223589.