FAM185A
| FAM185A | |||||||||||||||||||||||||||||||||||||||||||||||||||
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| Aliases | FAM185A | ||||||||||||||||||||||||||||||||||||||||||||||||||
| External IDs | MGI: 2140983; HomoloGene: 51828; GeneCards: FAM185A; OMA:FAM185A - orthologs | ||||||||||||||||||||||||||||||||||||||||||||||||||
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The FAM185A (Gene Family with sequence similarity 185, member A) is a protein that in humans is encoded by the FAM185A gene. The FAM185A gene is found on the positive strand of Chromosome 7 at 7q22.1. The gene begins 102,389,399bp from the p-terminus of the chromosome and ends at 102,449,672bp from the p-terminus; it covers a total of 73,308 basepairs.[4] The protein encoded by this gene is characterized by the presence of multiple copies of DUF4098 (Domain of unknown function, 4098) near its C-terminus. It is described as a Long Interspersed Nuclear Element (LINE), a subclass of penaeid repetitive elements (PREs).[5]
Homology
Homologs have been found in many animal species, but no fungal, plant, or other more distantly related homologs have been found.[6]
Clades that are known to have FAM185A orthologs include:
- Chordata
- Echinodermata
- Hemichordata
- Arthropoda
- Mollusca
- Annelida
- Cnidaria
- Heterokontophyta
- Choanoflagellatea
Clades in which no orthologs or homologs have been found include:
Protein
Isoforms
Two protein forming isoforms[4] are known to be transcribed from the FAM185A gene. Isoform 1 is the longer isoform, resulting in a protein 392 amino acids long. Isoform 2 is a shortened version of Isoform 1 resulting from alternative splicing of the mRNA. Isoform 2 forms a 275aa protein; it is missing a 118aa segment near the N-terminus of the protein.
DUF4098
Domain of Unknown Function 4098 is domain found in all FAM185A orthologs, as well as in some other non-orthologous species. DUF4098 is a c-terminal repetitive bacterial domain and is part of the pfam13345 family of domains and the superfamily cl16248.[7]
Pseudogene
Only one paralog, a pseudogene, for FAM185A exists in humans. The pseudogene, known as FAM185BP (Family of sequence similarity 185, member B, pseudogene), is also located on chromosome 7, from 76,713,203bp to 76,751,689bp.[8] The pseudogene encodes a non-functional 365aa protein, of which the first 356 residues are identical to that of FAM185A isoform 1.
Expression
Promoter
The predicted promoter region for FAM185A transcription is located just upstream of the gene from 102,388,867bp to 102,389,996bp of chromosome 7.[9] This region overlaps slightly with the translational start site of the protein, located at approximately 102,389,656bp of the genomic DNA. Over 200 potential transcription factor binding sites have been identified within the promoter region.[9]
Tissue expression
FAM185A is moderately expressed in select nervous and developmental related tissues. SAGE data[10] shows expression in the brain, cerebral cortex, retina, and skin of human tissues. EST abundance data from Unigene[11] shows increased expression in bone marrow, the adrenal gland, the brain, and muscle tissue. It is also more highly expressed in fetal tissues than adult tissues.
Subcellular expression
The subcellular location of the protein is not definitively known, but the protein is predicted to be either imported into the mitochondria or nucleus or to remain within the cytoplasm.[12]
Differential expression in mice
While little data is currently available on differential expression in humans, FAM185a expression is greatly decreased in ROR1-alpha knockout mice and toll-like receptor 5 knockout mice.[13] Mice also show a decrease in FAM185a expression in tissues that have been treated with Reversine, indicating the protein's potential role relates to stem cell differentiation during development.[13] GEO profiles for mice also show that FAM185a expression begins after fertilization, and continues to be high throughout embryonic development.[13]
Interactions
Interacting proteins
There are currently no confirmed protein interactions with FAM185A.
Interacting molecules
Three molecules have been found to interact with FAM185a in mice: 3,4-methylenedioxymethamphetamine, 2,3,7,8-Tetrachlorodibenzodioxin, and benzopyrene.[14] These interactions are not yet confirmed for the human protein, FAM185A.
Clinical significance
Currently, no diseases are known to be related to FAM185A mutations.
References
- ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000047221 – Ensembl, May 2017
- ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
- ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
- ^ a b FAM185A Gene page at NCBI
- ^ Huang SW, Lin YY, You EM, Liu TT, Shu HY, Wu KM, Tsai SF, Lo CF, Kou GH, Ma GC, Chen M, Wu D, Aoki T, Hirono I, Yu HT (2011). "Fosmid library end sequencing reveals a rarely known genome structure of marine shrimp Penaeus monodon". BMC Genomics. 12: 242. doi:10.1186/1471-2164-12-242. PMC 3124438. PMID 21575266.
{{cite journal}}: CS1 maint: unflagged free DOI (link) - ^ "BLAST". NCBI.
- ^ "CDD page for DUF4098". NCBI. Retrieved 2 May 2013.
- ^ "FAM185BP - Gene - NCBI". www.ncbi.nlm.nih.gov.
- ^ a b "ElDorado". Genomatix.
- ^ Database, GeneCards Human Gene. "FAM185A Gene - GeneCards - F185A Protein - F185A Antibody". www.genecards.org.
- ^ Group, Schuler. "EST Profile - Hs.202543". www.ncbi.nlm.nih.gov.
{{cite web}}:|last=has generic name (help) - ^ Horton, Paul. "WoLF PSORT". Retrieved April 2013.
{{cite web}}: Check date values in:|accessdate=(help) - ^ a b c NCBI Gene Expression Omnibus [www.ncbi.nlm.nih.gov/geo]
- ^ RGD. "Fam185a (family with sequence similarity 185, member A) - Rat Genome Database". rgd.mcw.edu.