CCL3L1

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Chemokine (C-C motif) ligand 3-like 1
Protein CCL3L1 PDB 1b50.png
PDB rendering based on 1b50.
Available structures
PDB Ortholog search: PDBe, RCSB
Identifiers
Symbols CCL3L1 ; 464.2; D17S1718; G0S19-2; LD78; LD78BETA; MIP1AP; SCYA3L; SCYA3L1
External IDs OMIM601395 MGI98260 HomoloGene2242 GeneCards: CCL3L1 Gene
Orthologs
Species Human Mouse
Entrez 6349 20302
Ensembl ENSG00000205021 ENSMUSG00000000982
UniProt P16619 P10855
RefSeq (mRNA) NM_021006 NM_011337
RefSeq (protein) NP_066286 NP_035467
Location (UCSC) Chr 17:
34.52 – 34.52 Mb
Chr 11:
83.65 – 83.65 Mb
PubMed search [1] [2]

Chemokine (C-C motif) ligand 3-like 1, also known as CCL3L1, is a protein which in humans is encoded by the CCL3L1 gene.[1][2][3]

Function[edit]

This gene is one of several chemokine genes clustered on the q-arm of chromosome 17. Chemokines are a family of secreted proteins involved in immunoregulatory and inflammatory processes. Specifically, chemokines attract lymphocytes to sites of infection or damage. This protein binds to several chemokine receptors including chemokine binding protein 2 (CCBP2 or D6) and chemokine (C-C motif) receptor 5 (CCR5).

CCR5 is a co-receptor for HIV, and binding of CCL3L1 to CCR5 inhibits HIV entry. Furthermore, the binding causes the receptor to be taken inside the cell by endocytosis, to eventually be reprocessed and re-expressed.[1]

Gene organization[edit]

The human genome reference assembly contains two full copies of the gene (CCL3L1 and CCL3L3) and an additional partial duplication, which is thought to result in a pseudogene, designated CCL3L2. This record represents the more telomeric full-length gene.[1]

Clinical significance[edit]

The copy number of this gene varies among individuals. This is hypothesized to be due to segmental duplication of the region containing CCL3. Most individuals have 1-6 copies in the diploid genome, although rare individuals have zero or more than six copies. With increased copy number, there is more CCL3L1 expressed, and so competition for the CCR5 binding site is increased. This leads to slower advancement of disease in HIV-infected individuals, giving those with greater copy number more resistance.[1]

Interactions[edit]

CCL3L1 has been shown to interact with CCR5.[4][5]

References[edit]

  1. ^ a b c d "Entrez Gene: CCL3L1 chemokine (C-C motif) ligand 3-like 1". 
  2. ^ Irving SG, Zipfel PF, Balke J, McBride OW, Morton CC, Burd PR et al. (Jun 1990). "Two inflammatory mediator cytokine genes are closely linked and variably amplified on chromosome 17q". Nucleic Acids Research 18 (11): 3261–70. doi:10.1093/nar/18.11.3261. PMC 330932. PMID 1972563. 
  3. ^ Hirashima M, Ono T, Nakao M, Nishi H, Kimura A, Nomiyama H et al. (1992). "Nucleotide sequence of the third cytokine LD78 gene and mapping of all three LD78 gene loci to human chromosome 17". DNA Sequence : The Journal of DNA Sequencing and Mapping 3 (4): 203–12. doi:10.3109/10425179209034019. PMID 1296815. 
  4. ^ Miyakawa T, Obaru K, Maeda K, Harada S, Mitsuya H (Feb 2002). "Identification of amino acid residues critical for LD78beta, a variant of human macrophage inflammatory protein-1alpha, binding to CCR5 and inhibition of R5 human immunodeficiency virus type 1 replication". The Journal of Biological Chemistry 277 (7): 4649–55. doi:10.1074/jbc.M109198200. PMID 11734558. 
  5. ^ Struyf S, Menten P, Lenaerts JP, Put W, D'Haese A, De Clercq E et al. (Jul 2001). "Diverging binding capacities of natural LD78beta isoforms of macrophage inflammatory protein-1alpha to the CC chemokine receptors 1, 3 and 5 affect their anti-HIV-1 activity and chemotactic potencies for neutrophils and eosinophils". European Journal of Immunology 31 (7): 2170–8. doi:10.1002/1521-4141(200107)31:7<2170::AID-IMMU2170>3.0.CO;2-D. PMID 11449371. 

Further reading[edit]