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* ''[[Aspergillus niger]]'' Strain:CBS 513.88, industrial use (2007<ref name="Pel">{{cite journal |author=Pel HJ, de Winde JH, Archer DB, ''et al.'' |title=Genome sequencing and analysis of the versatile cell factory ''Aspergillus niger'' CBS 513.88 |journal=[[Nature Biotechnology|Nat. Biotechnol.]] |volume=25 |issue=2 |pages=221–31 |year=2007 |month=February |pmid=17259976 |doi=10.1038/nbt1282 |url=}}</ref>)
* ''[[Aspergillus niger]]'' Strain:CBS 513.88, industrial use (2007<ref name="Pel">{{cite journal |author=Pel HJ, de Winde JH, Archer DB, ''et al.'' |title=Genome sequencing and analysis of the versatile cell factory ''Aspergillus niger'' CBS 513.88 |journal=[[Nature Biotechnology|Nat. Biotechnol.]] |volume=25 |issue=2 |pages=221–31 |year=2007 |month=February |pmid=17259976 |doi=10.1038/nbt1282 |url=}}</ref>)
* ''[[Aspergillus oryzae]]'' Strain:RIB40, industrial use (2005<ref name = "Machidam">{{cite journal |author=Machida M, Asai K, Sano M, ''et al.'' |title=Genome sequencing and analysis of ''Aspergillus oryzae'' |journal=[[Nature (journal)|Nature]] |volume=438 |issue=7071 |pages=1157–61 |year=2005 |month=December |pmid=16372010 |doi=10.1038/nature04300 |url=|bibcode = 2005Natur.438.1157M }}</ref>)
* ''[[Aspergillus oryzae]]'' Strain:RIB40, industrial use (2005<ref name = "Machidam">{{cite journal |author=Machida M, Asai K, Sano M, ''et al.'' |title=Genome sequencing and analysis of ''Aspergillus oryzae'' |journal=[[Nature (journal)|Nature]] |volume=438 |issue=7071 |pages=1157–61 |year=2005 |month=December |pmid=16372010 |doi=10.1038/nature04300 |url=|bibcode = 2005Natur.438.1157M }}</ref>)
* ''[[Penicillium chrysogenum]]'' Strain: Wisconsin54-1255, industrial use (2008<ref name="vandenberg">{{cite journal |author=van den Berg MA, Albang R, Albermann K, ''et al.'' |title=Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum |journal=Nat. Biotechnol. |volume=26 |issue=10 |pages=1161–8 |year=2008 |month=October |pmid=18820685 |doi=10.1038/nbt.1498 |url=}}</ref>)
=== [[Leotiomycetes]] ===
=== [[Leotiomycetes]] ===
* ''[[Blumeria graminis]] ffsp hordei'' Strain:DH14, plant pathogen (2010)
* ''[[Blumeria graminis]] ffsp hordei'' Strain:DH14, plant pathogen (2010)
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* ''[[Candida glabrata]]'' Strain:CBS138, human pathogen (2004<ref name = "Dujon">{{cite journal |author=Dujon B, Sherman D, Fischer G, ''et al.'' |title=Genome evolution in yeasts |journal=[[Nature (journal)|Nature]] |volume=430 |issue=6995 |pages=35–44 |year=2004 |month=July |pmid=15229592 |doi=10.1038/nature02579 |url=|bibcode = 2004Natur.430...35D }}</ref>)
* ''[[Candida glabrata]]'' Strain:CBS138, human pathogen (2004<ref name = "Dujon">{{cite journal |author=Dujon B, Sherman D, Fischer G, ''et al.'' |title=Genome evolution in yeasts |journal=[[Nature (journal)|Nature]] |volume=430 |issue=6995 |pages=35–44 |year=2004 |month=July |pmid=15229592 |doi=10.1038/nature02579 |url=|bibcode = 2004Natur.430...35D }}</ref>)
* ''[[Debaryomyces hansenii]]'' Strain:CBS767, industrial use (2004<ref name = "Dujon"/>)
* ''[[Debaryomyces hansenii]]'' Strain:CBS767, industrial use (2004<ref name = "Dujon"/>)
* ''[[Kluyveromyces lactis]]'' Strain:CLIB210, industrial use (200432004<ref name = "Dujon"/>)
* ''[[Kluyveromyces lactis]]'' Strain:CLIB210, industrial use (2004<ref name = "Dujon"/>)
* ''[[Saccharomyces cerevisiae]]'' Strain:S288C, industrial/model (1996<ref name = "Goffeau">{{cite journal |author=Goffeau A, Barrell BG, Bussey H, ''et al.'' |title=Life with 6000 genes |journal=[[Science (journal)|Science]] |volume=274 |issue=5287 |pages=546, 563–7 |year=1996 |month=October |pmid=8849441 |doi= 10.1126/science.274.5287.546|url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=8849441 |bibcode=1996Sci...274..546G}}</ref>)
* ''[[Yarrowia lipolytica]]'' Strain:CLIB99, industrial use (2004<ref name = "Dujon"/>)
=== [[Schizosaccharomycetes]] ===
* ''[[Schizosaccharomyces pombe]]'' Strain:972h, model eukaryote (2002<ref name = "Wood">{{cite journal |author=Wood V, Gwilliam R, Rajandream MA, ''et al.'' |title=The genome sequence of ''Schizosaccharomyces pombe'' |journal=[[Nature (journal)|Nature]] |volume=415 |issue=6874 |pages=871–80 |year=2002 |month=February |pmid=11859360 |doi=10.1038/nature724 |url=}}</ref>)
=== [[Sordariomycetes]] ===
=== [[Sordariomycetes]] ===
* ''[[Chaetomium globosum]]'' Strain:CBS 148.51, soil fungus (2005<ref>[http://www.broadinstitute.org/annotation/genome/chaetomium_globosum.2/GenomeStats.html Broad institute entry]</ref>)
* ''[[Chaetomium globosum]]'' Strain:CBS 148.51, soil fungus (2005<ref>[http://www.broadinstitute.org/annotation/genome/chaetomium_globosum.2/GenomeStats.html Broad institute entry]</ref>)
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* ''[[Agaricus bisporus]] var. bisporus'' Strain:H97, Champignon (JGI, 2009<ref>[http://genome.jgi-psf.org/Agabi_varbisH97_2/Agabi_varbisH97_2.home.html JGI entry]</ref>)
* ''[[Agaricus bisporus]] var. bisporus'' Strain:H97, Champignon (JGI, 2009<ref>[http://genome.jgi-psf.org/Agabi_varbisH97_2/Agabi_varbisH97_2.home.html JGI entry]</ref>)
* ''[[Laccaria bicolor]]'' Strain:S238N-H82, mycorrhiza (2008<ref name=laccaria>{{cite doi|10.1038/nature06556}}</ref>)
* ''[[Laccaria bicolor]]'' Strain:S238N-H82, mycorrhiza (2008<ref name=laccaria>{{cite doi|10.1038/nature06556}}</ref>)
* ''[[Serpula lacrymans]]'', plant pathogen (2011<ref>{{cite doi|10.1126/science.1205411}}</ref>)
=== [[Basidiomycetes]] ===
* ''[[Phanerochaete chrysosporium]]'' Strain:RP78, [[mycoremediation]] (2004<ref name=martinez>{{cite doi|10.1038/nbt967}}</ref>)
=== [[Pucciniomycetes]] ===
* ''[[Puccinia graminis]]'' f. sp. tritici, plant pathogen (2011<ref name="rust">{{pmid|21536894}}</ref>)
=== [[Tremellomycetes]] ===
=== [[Tremellomycetes]] ===
* ''[[Cryptococcus neoformans|Cryptococcus (Filobasidiella) neoformans]]'' JEC21, human pathogen (2005<ref name="Loftus">{{cite journal |author=Loftus BJ, Fung E, Roncaglia P, ''et al.'' |title=The genome of the basidiomycetous yeast and human pathogen ''Cryptococcus neoformans'' |journal=[[Science (journal)|Science]] |volume=307 |issue=5713 |pages=1321–4 |year=2005 |month=February |pmid=15653466 |doi=10.1126/science.1103773 |url=|bibcode = 2005Sci...307.1321L }}</ref>)
* ''[[Cryptococcus neoformans|Cryptococcus (Filobasidiella) neoformans]]'' JEC21, human pathogen (2005<ref name="Loftus">{{cite journal |author=Loftus BJ, Fung E, Roncaglia P, ''et al.'' |title=The genome of the basidiomycetous yeast and human pathogen ''Cryptococcus neoformans'' |journal=[[Science (journal)|Science]] |volume=307 |issue=5713 |pages=1321–4 |year=2005 |month=February |pmid=15653466 |doi=10.1126/science.1103773 |url=|bibcode = 2005Sci...307.1321L }}</ref>)
=== [[Ustilaginomycetes]] ===
* ''[[Sporisorium rellianum]]'', plant pathogen (20102010<ref>Jan Schirawski et al.: ''Pathogenicity determinants in smug fungi revealed by genome comparison''. Science, 10. Dezember 2010, Vol. 330, Issue 6010. DOI: 10.1126/science.1195330.</ref>)
* ''[[Ustilago maydis]]'', plant pathogen (2006<ref>{{cite journal |author=Kämper J, Kahmann R, Bölker M, ''et al.'' |title=Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis |journal=Nature |volume=444 |issue=7115 |pages=97–101 |year=2006 |month=November |pmid=17080091 |doi=10.1038/nature05248 |url=|bibcode = 2006Natur.444...97K }}</ref>)
== [[Microsporidia]] ==
== [[Microsporidia]] ==
* ''[[Encephalitozoon cuniculi]]'', human pathogen (2001<ref name = "Katinka">{{cite journal |author=Katinka MD, Duprat S, Cornillot E, ''et al.'' |title=Genome sequence and gene compaction of the eukaryote parasite ''Encephalitozoon cuniculi'' |journal=[[Nature (journal)|Nature]] |volume=414 |issue=6862 |pages=450–3 |year=2001 |month=November |pmid=11719806 |doi=10.1038/35106579 |url=}}</ref>)
* ''[[Encephalitozoon cuniculi]]'', human pathogen (2001<ref name = "Katinka">{{cite journal |author=Katinka MD, Duprat S, Cornillot E, ''et al.'' |title=Genome sequence and gene compaction of the eukaryote parasite ''Encephalitozoon cuniculi'' |journal=[[Nature (journal)|Nature]] |volume=414 |issue=6862 |pages=450–3 |year=2001 |month=November |pmid=11719806 |doi=10.1038/35106579 |url=}}</ref>)

Revision as of 18:03, 8 October 2011

This list of sequenced fungi genomes contains all the fungus species known to have publicly available complete genome sequences that have been assembled, annotated and published; draft genomes are not included, nor are organelle only sequences.

Ascomycota

Ascomycetes

Dothideomycetes

Eurotiomycetes

Leotiomycetes

Saccharomycetes

Schizosaccharomycetes

Sordariomycetes

Basidiomycota

Agaricomycetes

Basidiomycetes

Pucciniomycetes

Tremellomycetes

Ustilaginomycetes

Microsporidia

References

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  2. ^ JGI entry
  3. ^ Nierman WC, Pain A, Anderson MJ; et al. (2005). "Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus". Nature. 438 (7071): 1151–6. Bibcode:2005Natur.438.1151N. doi:10.1038/nature04332. PMID 16372009. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  4. ^ Pel HJ, de Winde JH, Archer DB; et al. (2007). "Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88". Nat. Biotechnol. 25 (2): 221–31. doi:10.1038/nbt1282. PMID 17259976. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  5. ^ Machida M, Asai K, Sano M; et al. (2005). "Genome sequencing and analysis of Aspergillus oryzae". Nature. 438 (7071): 1157–61. Bibcode:2005Natur.438.1157M. doi:10.1038/nature04300. PMID 16372010. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  6. ^ van den Berg MA, Albang R, Albermann K; et al. (2008). "Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum". Nat. Biotechnol. 26 (10): 1161–8. doi:10.1038/nbt.1498. PMID 18820685. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  7. ^ Dietrich FS, Voegeli S, Brachat S; et al. (2004). "The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome". Science. 304 (5668): 304–7. Bibcode:2004Sci...304..304D. doi:10.1126/science.1095781. PMID 15001715. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  8. ^ Butler G, Rasmussen MD, Lin MF; et al. (2009). "Evolution of pathogenicity and sexual reproduction in eight Candida genomes". Nature. 459 (7247): 657–62. Bibcode:2009Natur.459..657B. doi:10.1038/nature08064. PMC 2834264. PMID 19465905. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  9. ^ a b c d Dujon B, Sherman D, Fischer G; et al. (2004). "Genome evolution in yeasts". Nature. 430 (6995): 35–44. Bibcode:2004Natur.430...35D. doi:10.1038/nature02579. PMID 15229592. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  10. ^ Goffeau A, Barrell BG, Bussey H; et al. (1996). "Life with 6000 genes". Science. 274 (5287): 546, 563–7. Bibcode:1996Sci...274..546G. doi:10.1126/science.274.5287.546. PMID 8849441. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  11. ^ Wood V, Gwilliam R, Rajandream MA; et al. (2002). "The genome sequence of Schizosaccharomyces pombe". Nature. 415 (6874): 871–80. doi:10.1038/nature724. PMID 11859360. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  12. ^ Broad institute entry
  13. ^ UBC Press Release
  14. ^ Dean RA, Talbot NJ, Ebbole DJ; et al. (2005). "The genome sequence of the rice blast fungus Magnaporthe grisea". Nature. 434 (7036): 980–6. Bibcode:2005Natur.434..980D. doi:10.1038/nature03449. PMID 15846337. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  15. ^ JGI entry
  16. ^ Attention: This template ({{cite doi}}) is deprecated. To cite the publication identified by doi:10.1038/nature06556, please use {{cite journal}} (if it was published in a bona fide academic journal, otherwise {{cite report}} with |doi=10.1038/nature06556 instead.
  17. ^ Attention: This template ({{cite doi}}) is deprecated. To cite the publication identified by doi:10.1126/science.1205411, please use {{cite journal}} (if it was published in a bona fide academic journal, otherwise {{cite report}} with |doi=10.1126/science.1205411 instead.
  18. ^ Attention: This template ({{cite doi}}) is deprecated. To cite the publication identified by doi:10.1038/nbt967, please use {{cite journal}} (if it was published in a bona fide academic journal, otherwise {{cite report}} with |doi=10.1038/nbt967 instead.
  19. ^ PMID 21536894
  20. ^ Loftus BJ, Fung E, Roncaglia P; et al. (2005). "The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans". Science. 307 (5713): 1321–4. Bibcode:2005Sci...307.1321L. doi:10.1126/science.1103773. PMID 15653466. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  21. ^ Jan Schirawski et al.: Pathogenicity determinants in smug fungi revealed by genome comparison. Science, 10. Dezember 2010, Vol. 330, Issue 6010. DOI: 10.1126/science.1195330.
  22. ^ Kämper J, Kahmann R, Bölker M; et al. (2006). "Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis". Nature. 444 (7115): 97–101. Bibcode:2006Natur.444...97K. doi:10.1038/nature05248. PMID 17080091. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  23. ^ Katinka MD, Duprat S, Cornillot E; et al. (2001). "Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi". Nature. 414 (6862): 450–3. doi:10.1038/35106579. PMID 11719806. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
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