Atlastin-1

ATL1
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 3Q5D, 3Q5E, 3QNU, 3QOF, 4IDN, 4IDO, 4IDP, 4IDQ
Identifiers
Aliases	ATL1, AD-FSP, FSP1, GBP3, HSN1D, SPG3, SPG3A, atlastin1, Atlastin, atlastin GTPase 1
External IDs	OMIM: 606439; MGI: 1921241; HomoloGene: 9302; GeneCards: ATL1; OMA:ATL1 - orthologs
Gene location (Human) Chr. Chromosome 14 (human) Band 14q22.1 Start 50,532,509 bp End 50,634,017 bp
Gene location (Mouse) Chr. Chromosome 12 (mouse) Band 12|12 C2 Start 69,939,388 bp End 70,013,191 bp
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in middle temporal gyrus Brodmann area 23 endothelial cell lateral nuclear group of thalamus spinal ganglia Brodmann area 46 pars compacta pons superior frontal gyrus entorhinal cortex Top expressed in dorsomedial hypothalamic nucleus piriform cortex primary motor cortex ventral tegmental area anterior amygdaloid area ventromedial nucleus prefrontal cortex lateral hypothalamus cingulate gyrus subiculum More reference expression data BioGPS n/a
Gene ontology Molecular function nucleotide binding GTP binding protein binding hydrolase activity GTPase activity identical protein binding Cellular component cytoplasm integral component of membrane axon Golgi membrane Golgi apparatus cell projection endoplasmic reticulum membrane endoplasmic reticulum membrane Golgi cis cisterna endoplasmic reticulum tubular network endoplasmic reticulum tubular network membrane Biological process protein homooligomerization axonogenesis endoplasmic reticulum organization endoplasmic reticulum tubular network membrane organization metabolism Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 51062 73991 Ensembl ENSG00000198513 ENSMUSG00000021066 UniProt Q8WXF7 Q8BH66 RefSeq (mRNA) NM_181598 NM_001127713 NM_015915 NM_178628 RefSeq (protein) NP_001121185 NP_056999 NP_853629 NP_848743 Location (UCSC) Chr 14: 50.53 – 50.63 Mb Chr 12: 69.94 – 70.01 Mb PubMed search
Wikidata
View/Edit Human View/Edit Mouse

Atlastin, or Atlastin-1, is a protein that in humans is encoded by the ATL1 gene.

External links

• GeneReviews/NCBI/NIH/UW entry on Spastic Paraplegia 3A
• Human ATL1 genome location and ATL1 gene details page in the UCSC Genome Browser.
• Human GBP3 genome location and GBP3 gene details page in the UCSC Genome Browser.

Further reading

• Maruyama K, Sugano S (1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1–2): 171–4. doi:10.1016/0378-1119(94)90802-8. PMID 8125298.
• Andersson B, Wentland MA, Ricafrente JY, et al. (1996). "A "double adaptor" method for improved shotgun library construction". Anal. Biochem. 236 (1): 107–13. doi:10.1006/abio.1996.0138. PMID 8619474.
• Yu W, Andersson B, Worley KC, et al. (1997). "Large-scale concatenation cDNA sequencing". Genome Res. 7 (4): 353–8. doi:10.1101/gr.7.4.353. PMC 139146. PMID 9110174.
• Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, et al. (1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1–2): 149–56. doi:10.1016/S0378-1119(97)00411-3. PMID 9373149.
• Zhao X, Alvarado D, Rainier S, et al. (2001). "Mutations in a newly identified GTPase gene cause autosomal dominant hereditary spastic paraplegia". Nat. Genet. 29 (3): 326–31. doi:10.1038/ng758. PMID 11685207.
• Muglia M, Magariello A, Nicoletti G, et al. (2002). "Further evidence that SPG3A gene mutations cause autosomal dominant hereditary spastic paraplegia". Ann. Neurol. 51 (6): 794–5. doi:10.1002/ana.10185. PMID 12112092.
• Luan Z, Zhang Y, Liu A, et al. (2002). "A novel GTP-binding protein hGBP3 interacts with NIK/HGK". FEBS Lett. 530 (1–3): 233–8. doi:10.1016/S0014-5793(02)03467-1. PMID 12387898.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
• Tessa A, Casali C, Damiano M, et al. (2003). "SPG3A: An additional family carrying a new atlastin mutation". Neurology. 59 (12): 2002–5. doi:10.1212/01.wnl.0000036902.21438.98. PMID 12499504.
• Heilig R, Eckenberg R, Petit JL, et al. (2003). "The DNA sequence and analysis of human chromosome 14". Nature. 421 (6923): 601–7. doi:10.1038/nature01348. PMID 12508121.
• Dalpozzo F, Rossetto MG, Boaretto F, et al. (2004). "Infancy onset hereditary spastic paraplegia associated with a novel atlastin mutation". Neurology. 61 (4): 580–1. doi:10.1212/01.wnl.0000078189.73611.df. PMID 12939451.
• Zhu PP, Patterson A, Lavoie B, et al. (2004). "Cellular localization, oligomerization, and membrane association of the hereditary spastic paraplegia 3A (SPG3A) protein atlastin". J. Biol. Chem. 278 (49): 49063–71. doi:10.1074/jbc.M306702200. PMID 14506257.
• Wilkinson PA, Hart PE, Patel H, et al. (2004). "SPG3A mutation screening in English families with early onset autosomal dominant hereditary spastic paraplegia". J. Neurol. Sci. 216 (1): 43–5. doi:10.1016/S0022-510X(03)00210-7. PMID 14607301.
• Sauter SM, Engel W, Neumann LM, et al. (2004). "Novel mutations in the Atlastin gene (SPG3A) in families with autosomal dominant hereditary spastic paraplegia and evidence for late onset forms of HSP linked to the SPG3A locus". Hum. Mutat. 23 (1): 98. doi:10.1002/humu.9205. PMID 14695538.
• D'Amico A, Tessa A, Sabino A, et al. (2004). "Incomplete penetrance in an SPG3A-linked family with a new mutation in the atlastin gene". Neurology. 62 (11): 2138–9. doi:10.1212/01.wnl.0000127698.88895.85. PMID 15184642.
• Hedera P, Fenichel GM, Blair M, Haines JL (2004). "Novel mutation in the SPG3A gene in an African American family with an early onset of hereditary spastic paraplegia". Arch. Neurol. 61 (10): 1600–3. doi:10.1001/archneur.61.10.1600. PMID 15477516.
• Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
• Abel A, Fonknechten N, Hofer A, et al. (2005). "Early onset autosomal dominant spastic paraplegia caused by novel mutations in SPG3A". Neurogenetics. 5 (4): 239–43. doi:10.1007/s10048-004-0191-2. PMID 15517445.