SMG5

SMG5
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 2HWY
Identifiers
Aliases	SMG5, EST1B, LPTS-RP1, LPTSRP1, SMG-5, nonsense mediated mRNA decay factor, SMG5 nonsense mediated mRNA decay factor
External IDs	OMIM: 610962; MGI: 2447364; HomoloGene: 9095; GeneCards: SMG5; OMA:SMG5 - orthologs
Gene location (Human) Chr. Chromosome 1 (human) Band 1q22 Start 156,249,224 bp End 156,282,825 bp
Gene location (Mouse) Chr. Chromosome 3 (mouse) Band 3|3 F1 Start 88,243,567 bp End 88,269,645 bp
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in apex of heart gastrocnemius muscle anterior pituitary right adrenal gland granulocyte right hemisphere of cerebellum C1 segment right adrenal cortex left adrenal cortex skin of leg Top expressed in spermatocyte spermatid superior frontal gyrus neural layer of retina ventricular zone lip muscle of thigh seminiferous tubule dentate gyrus of hippocampal formation granule cell tail of embryo More reference expression data BioGPS More reference expression data
Gene ontology Molecular function protein phosphatase 2A binding histone deacetylase binding protein binding telomeric DNA binding ubiquitin protein ligase binding ribonuclease activity ribonucleoprotein complex binding telomerase RNA binding Cellular component cytoplasm cytosol nucleus telomerase holoenzyme complex Biological process regulation of dephosphorylation nuclear-transcribed mRNA catabolic process, nonsense-mediated decay mRNA export from nucleus regulation of telomere maintenance regulation of telomere maintenance via telomerase regulation of RNA stability RNA phosphodiester bond hydrolysis telomere maintenance via telomerase Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 23381 229512 Ensembl ENSG00000198952 ENSMUSG00000001415 UniProt Q9UPR3 Q6ZPY2 RefSeq (mRNA) NM_015327 NM_001323614 NM_001323615 NM_001323616 NM_001323617 NM_173188 NM_178246 RefSeq (protein) NP_001310543 NP_001310544 NP_001310545 NP_001310546 NP_056142 NP_839977 Location (UCSC) Chr 1: 156.25 – 156.28 Mb Chr 3: 88.24 – 88.27 Mb PubMed search
Wikidata
View/Edit Human View/Edit Mouse

Protein SMG5 is a protein that in humans is encoded by the SMG5 gene. This protein contains a PIN domain that appears to have mutated the residues in the active site.

Further reading

• Nakajima D, Okazaki N, Yamakawa H, et al. (2003). "Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones". DNA Res. 9 (3): 99–106. doi:10.1093/dnares/9.3.99. PMID 12168954.
• Kikuno R, Nagase T, Ishikawa K, et al. (1999). "Prediction of the coding sequences of unidentified human genes. XIV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro". DNA Res. 6 (3): 197–205. doi:10.1093/dnares/6.3.197. PMID 10470851.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
• Ohnishi T, Yamashita A, Kashima I, et al. (2004). "Phosphorylation of hUPF1 induces formation of mRNA surveillance complexes containing hSMG-5 and hSMG-7". Mol. Cell. 12 (5): 1187–200. doi:10.1016/S1097-2765(03)00443-X. PMID 14636577.
• Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
• Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
• Unterholzner L, Izaurralde E (2005). "SMG7 acts as a molecular link between mRNA surveillance and mRNA decay". Mol. Cell. 16 (4): 587–96. doi:10.1016/j.molcel.2004.10.013. PMID 15546618.
• Fukuhara N, Ebert J, Unterholzner L, et al. (2005). "SMG7 is a 14-3-3-like adaptor in the nonsense-mediated mRNA decay pathway". Mol. Cell. 17 (4): 537–47. doi:10.1016/j.molcel.2005.01.010. PMID 15721257.
• Azzalin CM, Lingner J (2006). "The human RNA surveillance factor UPF1 is required for S phase progression and genome stability". Curr. Biol. 16 (4): 433–9. doi:10.1016/j.cub.2006.01.018. PMID 16488880.
• Gregory SG, Barlow KF, McLay KE, et al. (2006). "The DNA sequence and biological annotation of human chromosome 1". Nature. 441 (7091): 315–21. doi:10.1038/nature04727. PMID 16710414.
• Lee H, Sengupta N, Villagra A, et al. (2006). "Histone deacetylase 8 safeguards the human ever-shorter telomeres 1B (hEST1B) protein from ubiquitin-mediated degradation". Mol. Cell. Biol. 26 (14): 5259–69. doi:10.1128/MCB.01971-05. PMC 1592721. PMID 16809764.