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|SEM image of flagellated Chlamydomonas (10000×)|
Chlamydomonas is a genus of green algae consisting of unicellular flagellates, found in stagnant water and on damp soil, in freshwater, seawater, and even in snow as "snow algae". Chlamydomonas is used as a model organism for molecular biology, especially studies of flagellar motility and chloroplast dynamics, biogeneses, and genetics. One of the many striking features of Chlamydomonas is that it contains ion channels, (channelrhodopsins), that are directly activated by light. Some regulatory systems of Chlamydomonas are more complex than their homologs in Gymnosperms, with evolutionarily related regulatory proteins being larger and containing additional domains.
Molecular phylogeny studies indicated that the traditional genus Chlamydomonas defined using morphological data was polyphyletic within Volvocales, and many species were reclassified (e.g., in Oogamochlamys, Lobochlamys), and many other "Chlamydomonas" lineages are to be reclassificated.
- Chlamydomonas reinhardtii
- Chlamydomonas caudata Wille
- Chlamydomonas moewusii
- Chlamydomonas nivalis
- Chlamydomonas ovoidae
It is generally found in habitat rich in ammonium salt. Chlamydomonas possesses red eye spots for photosensitivity and reproduces by both asexual and sexual means.
Chlamydomonas's asexual reproduction goes through Zoospores, Palmella stage, Aplanospores and Hypnospores; sexual reproduction through isogamy, anisogamy or oogamy.
- Motile unicellular algae.
- Generally oval in shape.
- Cell wall is made up of glycoprotein and non cellulosic polysaccharides instead of cellulose.
- Two anteriorly inserted whiplash flagella. Flagella originates from a basal granule located in the anterior papillate or non-papillate region of the cytoplasm. Flagellum shows typical 9+2 arrangement of the component fibrils.
- Contractile vacuoles found at near the bases of flagella.
- Prominent cup or bowl shaped chloroplast is present. The chloroplast contains bands composed of a variable number of the photosynthetic thylakoids which are not organised into grana-like structures.
- The nucleus is enclosed in a cup-shaped chloroplast, which has a single large pyrenoid where starch is formed from photosynthetic products. Pyrenoid with starch sheath is present in the posterior end of the chloroplast.
- Eye spot present in the anterior portion of the chloroplast. It consists of two or three, more or less parallel rows of linearly arranged fat droplets.
- Hoham, R.W., Bonome, T.A., Martin, C.W. and Leebens-mack, J.H. 2002. A combined 18S rDNA and rbcL phylogenetic analysis of Chloromonas and Chlamydomonas (Chlorophyceae, Volvocales ) emphasizing snow and other cold-termperature habitats. J. Phycol., 38: 1051–1064. 
- A Falciatore, L Merendino, F Barneche, M Ceol, R Meskauskiene, K Apel, JD Rochaix (2005). The FLP proteins act as regulators of chlorophyll synthesis in response to light and plastid signals in Chlamydomonas. The red eye spot in chlamydomonas is sensitive to light and hence determines movement. Genes & Dev, 19:176-187 
- Juliet Brodie & Jane Lewis (2007). Unravelling the algae: the past, present, and future of algal systematics. CRC Press. p. 140, .
- Wehr, J.D., Sheath, R.G. & Kociolek, J.P. (eds., 2015). Freshwater Algae of North America: Ecology and Classification. Academic Press, USA, p. 275-276, .
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- Hazen, Tracy E. 1922. The phylogeny of the genus Brachiomonas. Bulletin of the Torrey Botanical Club. 49(4):75-92, with two plates.
- Aoyama, H., Kuroiwa, T and Nakamura,S. 2009. The dynamic behaviour of mitochrandia in living zygotes during maturation and meiosis in Chlamydomonas reinhardtii. Eur. J. Phycol. 44: 497 - 507
- Chlamydomonas Center
- Chlamydomonas reinhardtii Transcription Factor Database
- "Chlamydomonas"; a song by Andy Offutt Irwin about the life cycle of Chlamydomonas; posted on the website of the International Society of Protozoologists
- 3D electron microscopy structures of Chlamydomonas-related proteins at the EM Data Bank(EMDB)