In molecular biology, TBE and TAE buffers are often used in procedures involving nucleic acids, the most common being electrophoresis. Tris-acid solutions are effective buffers for slightly basic conditions, which keep DNA deprotonated and soluble in water. EDTA is a chelator of divalent cations, particularly of magnesium (Mg2+). As these ions are necessary co-factors for many enzymes, including contaminant nucleases, the role of the EDTA is to protect the nucleic acids against enzymatic degradation. But since Mg2+ is also a co-factor for many useful DNA-modifying enzymes such as restriction enzymes and DNA polymerases, its concentration in TBE or TAE buffers is generally kept low (typically at around 1 mM).
More recently discovered substitutes for TBE and TAE buffers for electrophoresis are available.
Recipe (1 liter of 5X stock solution)
- 54 g of Tris base (CAS# 77-86-1)
- 27.5 g of boric acid (CAS# 10043-35-3)
- 20 ml of 0.5 M EDTA (CAS# 60-00-4) (pH 8.0)
Adjust pH to 8.3 by HCl.
TBE can be diluted to 1X prior to use in electrophoresis, 0.5x is acceptable as well. Higher concentrations will result in poor results due to excessive heat generation.
- LB buffer, lithium borate buffer, a similar buffer containing lithium ions in place of Tris
- TAE buffer, a similar buffer containing acetic acid in place of boric acid
- Brody, J.R.; Kern, S.E. (2004). "History and principles of conductive media for standard DNA electrophoresis" (PDF). Anal Biochem. 333 (1): 1–13. doi:10.1016/j.ab.2004.05.054. PMID 15351274.