List of sequenced animal genomes: Difference between revisions

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*Diptera
*Diptera
**''[[Aedes aegypti]]'' <small>Strain:LVPib12</small>, [[mosquito]] ([[Vector (epidemiology)|vector]] of [[dengue fever]], etc.) (2007<ref>{{cite journal |author=Nene V |title=Genome sequence of Aedes aegypti, a major arbovirus vector |journal=[[Science (journal)|Science]] |volume=316 |issue=5832 |pages=1718–23 |date=June 2007 |pmid=17510324 |doi=10.1126/science.1138878 |url= |pmc=2868357 |bibcode=2007Sci...316.1718N |name-list-format=vanc |author2=Wortman JR |author3=Lawson D |display-authors=4 |last4=Haas |first4=B. |last5=Kodira |first5=C. |last6=Tu |first6=Z. |last7=Loftus |first7=B. |last8=Xi |first8=Z. |last9=Megy |first9=K. |last10=Grabherr |first10=Manfred |last11=Ren |first11=Quinghu |last12=Zdobnov |first12=Evgeny M. |last13=Lobo |first13=Neil F. |last14=Campbell |first14=Kathryn S. |last15=Brown |first15=Susan E. |last16=Bonaldo |first16=Maria F. |last17=Zhu |first17=Jingsong |last18=Sinkins |first18=Steven P. |last19=Hogenkamp |first19=David G. |last20=Amedeo |first20=Paolo |last21=Arensburger |first21=Peter |last22=Atkinson |first22=Peter W. |last23=Bidwell |first23=Shelby |last24=Biedler |first24=Jim |last25=Birney |first25=Ewan |last26=Bruggner |first26=Robert V. |last27=Costas |first27=Javier |last28=Coy |first28=Monique R. |last29=Crabtree |first29=Jonathan |last30=Crawford |first30=Matt}}</ref>)
**''[[Aedes aegypti]]'' <small>Strain:LVPib12</small>, [[mosquito]] ([[Vector (epidemiology)|vector]] of [[dengue fever]], etc.) (2007<ref>{{cite journal |author=Nene V |title=Genome sequence of Aedes aegypti, a major arbovirus vector |journal=[[Science (journal)|Science]] |volume=316 |issue=5832 |pages=1718–23 |date=June 2007 |pmid=17510324 |doi=10.1126/science.1138878 |url= |pmc=2868357 |bibcode=2007Sci...316.1718N |name-list-format=vanc |author2=Wortman JR |author3=Lawson D |display-authors=4 |last4=Haas |first4=B. |last5=Kodira |first5=C. |last6=Tu |first6=Z. |last7=Loftus |first7=B. |last8=Xi |first8=Z. |last9=Megy |first9=K. |last10=Grabherr |first10=Manfred |last11=Ren |first11=Quinghu |last12=Zdobnov |first12=Evgeny M. |last13=Lobo |first13=Neil F. |last14=Campbell |first14=Kathryn S. |last15=Brown |first15=Susan E. |last16=Bonaldo |first16=Maria F. |last17=Zhu |first17=Jingsong |last18=Sinkins |first18=Steven P. |last19=Hogenkamp |first19=David G. |last20=Amedeo |first20=Paolo |last21=Arensburger |first21=Peter |last22=Atkinson |first22=Peter W. |last23=Bidwell |first23=Shelby |last24=Biedler |first24=Jim |last25=Birney |first25=Ewan |last26=Bruggner |first26=Robert V. |last27=Costas |first27=Javier |last28=Coy |first28=Monique R. |last29=Crabtree |first29=Jonathan |last30=Crawford |first30=Matt}}</ref>)
**''[[Aedes albopictus]]'' (2015<ref>{{cite journal |author=Chen XG |title=Genome sequence of the Asian Tiger mosquito, ''Aedes albopictus'', reveals insights into its biology, genetics, and evolution. |journal=Proc Natl Acad Sci U S A. |volume=112 |issue=44 |pages=E5907-15 |date=October 2015 |pmid=26483478 |doi=10.1073/pnas.1516410112 |url= |pmc= |bibcode= |name-list-format=vanc |author2=et al.}}</ref>)
**''[[Anopheles darlingi]]''
**''[[Anopheles darlingi]]''
**''[[Anopheles gambiae]]'' <small>Strain: PEST</small>, [[mosquito]] ([[Vector (epidemiology)|vector]] of [[malaria]]) (2002<ref>{{cite journal |author=Holt RA |title=The genome sequence of the malaria mosquito ''Anopheles gambiae'' |journal=[[Science (journal)|Science]] |volume=298 |issue=5591 |pages=129–49 |date=October 2002 |pmid=12364791 |doi=10.1126/science.1076181 |url= |bibcode=2002Sci...298..129H |name-list-format=vanc |author2=Subramanian GM |author3=Halpern A |display-authors=3 |last4=Sutton |first4=GG |last5=Charlab |first5=R |last6=Nusskern |first6=DR |last7=Wincker |first7=P |last8=Clark |first8=AG |last9=Ribeiro |first9=JM |last10=Wides |first10=Ron |last11=Salzberg |first11=Steven L. |last12=Loftus |first12=Brendan |last13=Yandell |first13=Mark |last14=Majoros |first14=William H. |last15=Rusch |first15=Douglas B. |last16=Lai |first16=Zhongwu |last17=Kraft |first17=Cheryl L. |last18=Abril |first18=Josep F. |last19=Anthouard |first19=Veronique |last20=Arensburger |first20=Peter |last21=Atkinson |first21=Peter W. |last22=Baden |first22=Holly |last23=De Berardinis |first23=Veronique |last24=Baldwin |first24=Danita |last25=Benes |first25=Vladimir |last26=Biedler |first26=Jim |last27=Blass |first27=Claudia |last28=Bolanos |first28=Randall |last29=Boscus |first29=Didier |last30=Barnstead |first30=Mary}}H</ref>)
**''[[Anopheles gambiae]]'' <small>Strain: PEST</small>, [[mosquito]] ([[Vector (epidemiology)|vector]] of [[malaria]]) (2002<ref>{{cite journal |author=Holt RA |title=The genome sequence of the malaria mosquito ''Anopheles gambiae'' |journal=[[Science (journal)|Science]] |volume=298 |issue=5591 |pages=129–49 |date=October 2002 |pmid=12364791 |doi=10.1126/science.1076181 |url= |bibcode=2002Sci...298..129H |name-list-format=vanc |author2=Subramanian GM |author3=Halpern A |display-authors=3 |last4=Sutton |first4=GG |last5=Charlab |first5=R |last6=Nusskern |first6=DR |last7=Wincker |first7=P |last8=Clark |first8=AG |last9=Ribeiro |first9=JM |last10=Wides |first10=Ron |last11=Salzberg |first11=Steven L. |last12=Loftus |first12=Brendan |last13=Yandell |first13=Mark |last14=Majoros |first14=William H. |last15=Rusch |first15=Douglas B. |last16=Lai |first16=Zhongwu |last17=Kraft |first17=Cheryl L. |last18=Abril |first18=Josep F. |last19=Anthouard |first19=Veronique |last20=Arensburger |first20=Peter |last21=Atkinson |first21=Peter W. |last22=Baden |first22=Holly |last23=De Berardinis |first23=Veronique |last24=Baldwin |first24=Danita |last25=Benes |first25=Vladimir |last26=Biedler |first26=Jim |last27=Blass |first27=Claudia |last28=Bolanos |first28=Randall |last29=Boscus |first29=Didier |last30=Barnstead |first30=Mary}}H</ref>)
Line 353: Line 354:
**''[[Anopheles sinensis]]'', mosquito (vector of [[Palsmodium vivax|vivax malaria]], [[lympahtic filariasis]] and ''[[Setaria]]'' infections), (2014)<ref>{{cite journal |last1=Zhou |first1=Dan |last2=Zhang |first2=Donghui |last3=Ding |first3=Guohui |last4=Shi |first4=Linna |last5=Hou |first5=Qing |last6=Ye |first6=Yuting |last7=Xu |first7=Yang |last8=Zhou |first8=Huayun |last9=Xiong |first9=Chunrong |last10=Li |first10=Shengdi |last11=Yu |first11=Jing |last12=Hong |first12=Shanchao |last13=Yu |first13=Xinyou |last14=Zou |first14=Ping |last15=Chen |first15=Chen |last16=Chang |first16=Xuelian |last17=Wang |first17=Weijie |last18=Lv |first18=Yuan |last19=Sun |first19=Yan |last20=Ma |first20=Lei |last21=Shen |first21=Bo |last22=Zhu |first22=Changliang |title=Genome sequence of ''Anopheles sinensis'' provides insight into genetics basis of mosquito competence for malaria parasites |journal=BMC Genomics |volume=15 |issue=1 |pages=42 |doi=10.1186/1471-2164-15-42 |pmid=24438588 |pmc=3901762 |year=2014}}</ref>
**''[[Anopheles sinensis]]'', mosquito (vector of [[Palsmodium vivax|vivax malaria]], [[lympahtic filariasis]] and ''[[Setaria]]'' infections), (2014)<ref>{{cite journal |last1=Zhou |first1=Dan |last2=Zhang |first2=Donghui |last3=Ding |first3=Guohui |last4=Shi |first4=Linna |last5=Hou |first5=Qing |last6=Ye |first6=Yuting |last7=Xu |first7=Yang |last8=Zhou |first8=Huayun |last9=Xiong |first9=Chunrong |last10=Li |first10=Shengdi |last11=Yu |first11=Jing |last12=Hong |first12=Shanchao |last13=Yu |first13=Xinyou |last14=Zou |first14=Ping |last15=Chen |first15=Chen |last16=Chang |first16=Xuelian |last17=Wang |first17=Weijie |last18=Lv |first18=Yuan |last19=Sun |first19=Yan |last20=Ma |first20=Lei |last21=Shen |first21=Bo |last22=Zhu |first22=Changliang |title=Genome sequence of ''Anopheles sinensis'' provides insight into genetics basis of mosquito competence for malaria parasites |journal=BMC Genomics |volume=15 |issue=1 |pages=42 |doi=10.1186/1471-2164-15-42 |pmid=24438588 |pmc=3901762 |year=2014}}</ref>
**''[[Anopheles stephensii]]''
**''[[Anopheles stephensii]]''
**''[[Anopheles arabiensis]]'' (2015<ref name = "neafsey2015">{{cite journal |author=Neafsey DE |title= Highly evolvable malaria vectors: The genomes of 16 ''Anopheles'' mosquitoes |journal=[[Science (journal)|Science]] |volume=347 |issue=6217 |pages=1258522 |date=January 2015 |pmid=25554792 |doi=10.1126/science.1258522 |url= http://science.sciencemag.org/content/347/6217/1258522.full | name-list-format= |author2= et al }}H</ref>)
**''[[Anopheles quadriannulatus]]'' (2015)<ref name="neafsey2015"/>)
**''[[Anopheles merus]]'' (2015)<ref name="neafsey2015"/>)
**''[[Anopheles melas]]'' (2015)<ref name="neafsey2015"/>)
**''[[Anopheles christyi]]'' (2015)<ref name="neafsey2015"/>)
**''[[Anopheles epiroticus]]'' (2015)<ref name="neafsey2015"/>)
**''[[Anopheles maculatus]]'' (2015)<ref name="neafsey2015"/>)
**''[[Anopheles culicifacies]]'' (2015)<ref name="neafsey2015"/>)
**''[[Anopheles minimus]]'' (2015)<ref name="neafsey2015"/>)
**''[[Anopheles funestus]]'' (2015)<ref name="neafsey2015"/>)
**''[[Anopheles dirus]]'' (2015)<ref name="neafsey2015"/>)
**''[[Anopheles farauti]]'' (2015)<ref name="neafsey2015"/>)
**''[[Anopheles atroparvus]]'' (2015)<ref name="neafsey2015"/>)
**''[[Anopheles sinensis]]'' (2015)<ref name="neafsey2015"/>)
**''[[Anopheles albimanus]]'' (2015)<ref name="neafsey2015"/>)
**''[[Clogmia albipunctata]]'', [[moth midge]] (transcriptome 2013<ref name="Jimenez-Guri2013">{{cite journal |journal=BMC Genomics |title=Comparative transcriptomics of early dipteran development |volume=14 |page=123 |doi=10.1186/1471-2164-14-123 |year=2013 |last1=Jiménez-Guri |first1=Eva |last2=Huerta-Cepas |first2=Jaime |last3=Cozzuto |first3=Luca |last4=Wotton |first4=Karl R |last5=Kang |first5=Hui |last6=Himmelbauer |first6=Heinz |last7=Roma |first7=Guglielmo |last8=Gabaldón |first8=Toni |last9=Jaeger |first9=Johannes}}</ref>)
**''[[Clogmia albipunctata]]'', [[moth midge]] (transcriptome 2013<ref name="Jimenez-Guri2013">{{cite journal |journal=BMC Genomics |title=Comparative transcriptomics of early dipteran development |volume=14 |page=123 |doi=10.1186/1471-2164-14-123 |year=2013 |last1=Jiménez-Guri |first1=Eva |last2=Huerta-Cepas |first2=Jaime |last3=Cozzuto |first3=Luca |last4=Wotton |first4=Karl R |last5=Kang |first5=Hui |last6=Himmelbauer |first6=Heinz |last7=Roma |first7=Guglielmo |last8=Gabaldón |first8=Toni |last9=Jaeger |first9=Johannes}}</ref>)
**''[[Culex quinquefasciatus]]'', [[mosquito]] ([[Vector (epidemiology)|vector]] of [[West Nile virus]], [[filariasis]] etc.) (2010<ref>{{cite journal |author=Arensburger P |title=Sequencing of Culex quinquefasciatus Establishes a Platform for Mosquito Comparative Genomics |journal=[[Science (journal)|Science]] |volume=330 |issue=6000 |pages=86–88 |date=October 2010 |pmid= 20929810 |doi=10.1126/science.1191864 |url= |pmc=3740384 |bibcode=2010Sci...330...86A |name-list-format=vanc |author2=Megy K |author3=Waterhouse RM |display-authors=4 |last4=Abrudan |first4=J. |last5=Amedeo |first5=P. |last6=Antelo |first6=B. |last7=Bartholomay |first7=L. |last8=Bidwell |first8=S. |last9=Caler |first9=E. |last10=Camara |first10=Francisco |last11=Campbell |first11=Corey L. |last12=Campbell |first12=Kathryn S. |last13=Casola |first13=Claudio |last14=Castro |first14=Marta T. |last15=Chandramouliswaran |first15=Ishwar |last16=Chapman |first16=Sinéad B. |last17=Christley |first17=Scott |last18=Costas |first18=Javier |last19=Eisenstadt |first19=Eric |last20=Feschotte |first20=Cedric |last21=Fraser-Liggett |first21=Claire |last22=Guigo |first22=Roderic |last23=Haas |first23=Brian |last24=Hammond |first24=Martin |last25=Hansson |first25=Bill S. |last26=Hemingway |first26=Janet |last27=Hill |first27=Sharon R. |last28=Howarth |first28=Clint |last29=Ignell |first29=Rickard |last30=Kennedy |first30=Ryan C.}}</ref>)
**''[[Culex quinquefasciatus]]'', [[mosquito]] ([[Vector (epidemiology)|vector]] of [[West Nile virus]], [[filariasis]] etc.) (2010<ref>{{cite journal |author=Arensburger P |title=Sequencing of Culex quinquefasciatus Establishes a Platform for Mosquito Comparative Genomics |journal=[[Science (journal)|Science]] |volume=330 |issue=6000 |pages=86–88 |date=October 2010 |pmid= 20929810 |doi=10.1126/science.1191864 |url= |pmc=3740384 |bibcode=2010Sci...330...86A |name-list-format=vanc |author2=Megy K |author3=Waterhouse RM |display-authors=4 |last4=Abrudan |first4=J. |last5=Amedeo |first5=P. |last6=Antelo |first6=B. |last7=Bartholomay |first7=L. |last8=Bidwell |first8=S. |last9=Caler |first9=E. |last10=Camara |first10=Francisco |last11=Campbell |first11=Corey L. |last12=Campbell |first12=Kathryn S. |last13=Casola |first13=Claudio |last14=Castro |first14=Marta T. |last15=Chandramouliswaran |first15=Ishwar |last16=Chapman |first16=Sinéad B. |last17=Christley |first17=Scott |last18=Costas |first18=Javier |last19=Eisenstadt |first19=Eric |last20=Feschotte |first20=Cedric |last21=Fraser-Liggett |first21=Claire |last22=Guigo |first22=Roderic |last23=Haas |first23=Brian |last24=Hammond |first24=Martin |last25=Hansson |first25=Bill S. |last26=Hemingway |first26=Janet |last27=Hill |first27=Sharon R. |last28=Howarth |first28=Clint |last29=Ignell |first29=Rickard |last30=Kennedy |first30=Ryan C.}}</ref>)

Revision as of 17:39, 16 February 2016

This list of sequenced animal genomes contains animal species for which complete genome sequences have been assembled, annotated and published. Substantially complete draft genomes are included, but not partial genome sequences or organelle-only sequences.

Porifera

Ctenophora

Placozoa

Cnidaria

Deuterostomia

Hemichordates

  • Saccaglossus kowalevskii, enteropneusta (2015[10])
  • Ptychodera flava, pterobranch (2015[10])

Echinoderms

Urochordates

Cephalochordates

Cyclostomes

Cartilaginous fish

Bony fish

good for any report

Amphibians

Reptiles

Birds

Mammals

Protostomia

Insects

Crustaceans

Chelicerates

Myriopoda

Tardigrades

Molluscs

Platyhelminthes

Nematodes

Annelids

Brachiopoda

Rotifera

See also

References

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  165. ^ Yat T. Tang, Xin Gao, Bruce A. Rosa, Sahar Abubucker, Kymberlie Hallsworth-Pepin, John Martin, Rahul Tyagi, Esley Heizer, Xu Zhang, Veena Bhonagiri-Palsikar, Patrick Minx, Wesley C. Warren, Qi Wang, Bin Zhan, Peter J. Hotez, Paul W. Sternberg, Annette Dougall, Soraya Torres Gaze, Jason Mulvenna, Javier Sotillo, Shoba Ranganathan, Elida M. Rabelo, Richard W. Wilson, Philip L. Felgner, Jeffrey Bethony, John M. Hawdon, Robin B. Gasser, Alex Loukas, & Makedonka Mitreva (March 2014). "Genome of the human hookworm Necator americanus". Nature Genetics. 46 (3): 261–269. doi:10.1038/ng.2875. PMC 3978129. PMID 24441737.{{cite journal}}: CS1 maint: multiple names: authors list (link)
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