User talk:Julialturner

RELN
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 2ddu, 2e26, 2DDU, 2E26, 3A7Q
Identifiers
Aliases	RELN, LIS2, PRO1598, RL, reelin, ETL7
External IDs	OMIM: 600514; MGI: 103022; HomoloGene: 3699; GeneCards: RELN; OMA:RELN - orthologs
Gene location (Human) Chr. Chromosome 7 (human) Band 7q22.1 Start 103,471,381 bp End 103,989,658 bp
Gene location (Mouse) Chr. Chromosome 5 (mouse) Band 5 A3|5 9.98 cM Start 22,089,452 bp End 22,549,700 bp
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in olfactory bulb cerebellar vermis cerebellar hemisphere paraflocculus of cerebellum right hemisphere of cerebellum spinal ganglia trigeminal ganglion endothelial cell tibial nerve pons Top expressed in ciliary body cerebellar vermis lobe of cerebellum iris olfactory bulb sciatic nerve endothelial cell of lymphatic vessel superior colliculus paraventricular nucleus of hypothalamus piriform cortex More reference expression data BioGPS More reference expression data
Gene ontology Molecular function metal ion binding peptidase activity hydrolase activity serine-type peptidase activity lipoprotein particle receptor binding very-low-density lipoprotein particle receptor binding Cellular component cytoplasm dendrite plasma membrane extracellular region extracellular space membrane extracellular matrix neuron projection Biological process NMDA glutamate receptor clustering positive regulation of lateral motor column neuron migration dendrite development proteolysis cerebral cortex development lateral motor column neuron migration positive regulation of phosphatidylinositol 3-kinase signaling positive regulation of TOR signaling long-term memory multicellular organism development receptor localization to synapse postsynaptic density protein 95 clustering ventral spinal cord development protein localization to synapse forebrain development long-term potentiation regulation of gene expression layer formation in cerebral cortex cell migration learning associative learning cell adhesion hippocampus development spinal cord patterning cerebral cortex tangential migration positive regulation of peptidyl-tyrosine phosphorylation glial cell differentiation peptidyl-tyrosine phosphorylation positive regulation of excitatory postsynaptic potential positive regulation of CREB transcription factor activity positive regulation of protein kinase activity modulation of chemical synaptic transmission positive regulation of AMPA receptor activity brain development central nervous system development response to pain positive regulation of synapse maturation positive regulation of long-term synaptic potentiation cell morphogenesis involved in differentiation neuron migration positive regulation of neuron projection development positive regulation of small GTPase mediated signal transduction positive regulation of synaptic transmission, glutamatergic regulation of behavior positive regulation of dendritic spine morphogenesis reelin-mediated signaling pathway regulation of NMDA receptor activity positive regulation of protein tyrosine kinase activity axon guidance Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 5649 19699 Ensembl ENSG00000189056 ENSMUSG00000042453 UniProt P78509 Q60841 RefSeq (mRNA) NM_173054 NM_005045 NM_011261 NM_001310464 RefSeq (protein) NP_005036 NP_774959 NP_001297393 NP_035391 Location (UCSC) Chr 7: 103.47 – 103.99 Mb Chr 5: 22.09 – 22.55 Mb PubMed search
Wikidata
View/Edit Human View/Edit Mouse

NDUFS6 problem with coordinates and mouse n/a

Infobox gene Module

Is it possible to create parameters name, image and maybe image description in Template:Infobox gene so that it would be possible to edit them? Now this parameters are generated automatically and there is now way to change them. This can become a problem because automatically chosen images are not always the best one. Plus makes this module hard to use in other wikipedias, where names of genes or proteins are not written in English.Эрг (talk) 16:56, 21 May 2016 (UTC)

@Эрг: Hi, yes it is possible to change the image. Under the new infobox_gene you will see links to wikidata. The image under the human gene wikidata item will need to be changed/added to include the desired image link. Is there a particular example you are looking at, so that I could go through step by step to show you how to change it?Julialturner (talk) 19:02, 21 May 2016 (UTC)

@Julialturner: No, thanks. Now that you mentioned wikidata, I got it. But my main problem with this template still stays. You see, I localized your great module for Russian wikipedia and easily translated it, but the template generated keep displaying it's name on English. Is it possible to do so that the template displays it's own name (label) according to the language of wikipedia it is used in, the same way it displays GO ids? Also, as I said before, it would be nice to have an image description parameter. One more time thank you for your hard work, it's really awesome.--Эрг (talk) 21:31, 21 May 2016 (UTC)

@Эрг: I will look into translating the label. Maybe @I9606: will have some input? I am surprised that the GO ids are translated and will try to see what the mechanism that is at work here. Thanks for input in making the module more usable. Julialturner (talk) 21:15, 22 May 2016 (UTC)

@Эрг and Julialturner: Which label are you referring to? Wikidata has a mechanism to adapt its interface display of labels and descriptions based on the locale of the user - this is probably how the GO terms are being adapted. If you mean the label of the template itself??? that label wouldn't be in wikidata hence would not get the same automatic adaptation. On the image front, I think we could probably add the image and image description parameters to allow users to override the defaults coming from wikidata. I think that would be a good idea. The current one image, one item approach is rather limiting. --Benjamin Good (talk) 21:58, 22 May 2016 (UTC)

@Benjamin Good and Julialturner: What I am referring to is the way Gene ontology section works e. g. the gene ontology section will display QID in Russian wiki if the particular wikidata object have empty field "lable" at the top of the page (where the Language field is). So, If you fill this field in it will display correct phrase for given GO id (and each GO id is has it's own wikidata object). My point is why not to make Infobox_gene module to request it's name (the line displayed at the top of the box on the wikipedia page) the same way it does with GO ids? This way, by editing one wikidata object, it will be possible to adjust this template for any given language. The same thing should be done with another multilingual param - image description (if we would have any). I think it snould be possible to use the same piece of code, used for getting GO ids from wikidata, for aforementioned params (even if we don't quite understand how does it work). This, and you should probably white an extensive guide on how to edit this new template through the means of wikidata.--Эрг (talk) 23:03, 26 May 2016 (UTC)

P.S You can see how this works on the page ru:Тиоредоксин, which I experimented with.--Эрг (talk) 23:06, 26 May 2016 (UTC)

need help with zh wiki localization

in Gene ontology section, if the biological role has no chinese name on wikidata, it will display it's QID. Is it possible to make it fallback to english when there's no chinese data?example Panintelize (talk) 03:09, 26 May 2016 (UTC)

@Panitelize: I am not sure let me look into it. Julialturner (talk) 05:21, 26 May 2016 (UTC)

@Panitelize: You can just go to the wikidata page of this item and edit it's lable field, right at the top of the page. Create field for Chinese language and write down an appropriate translation - then it will be displayed correctly on your language. --Эрг (talk) 22:32, 26 May 2016 (UTC)

@Эрг:where can I find a full list of used items?Panintelize (talk) 06:22, 5 June 2016 (UTC)

Infobox Gene problem

The article Major histocompatibility complex, class II, DQ alpha 1 has a script error, which looks like it’s happening around your last change to Module:Infobox gene. Could you have a look at it? As far as I can tell nothing is wrong with the article or its data.--JohnBlackburne^words_deeds 03:46, 31 May 2016 (UTC)

@JohnBlackburne: Thank you for making me aware of this scripting error. It has been corrected.Julialturner (talk) 05:44, 31 May 2016 (UTC)

Chromosome category

Hello. Are there any plans to make {{Infobox_gene}} put the articles to corresponding categories based on chromosome they are located on, like Category:Genes on human chromosome 1?--RoadTrain (talk) 01:11, 1 June 2016 (UTC)

@RoadTrain: Sure that is a good idea. I will look into how to get these added. Julialturner (talk)

moving all displayed text to the top of code(as variables?) for easier localization and update

If the maintainer on other wikis wants to update the code they can just switch out the bottom part --Panintelize (talk) 06:21, 5 June 2016 (UTC)

I support this suggestion. I think all localizeable stuff should be defined in one place.--RoadTrain (talk) 22:08, 5 June 2016 (UTC)

If I understand you correctly, then you like all the code contained in the variable "root" at the top of the code. Is this what you had in mind? Julialturner (talk) 21:42, 6 June 2016 (UTC)