Colletotrichum
| Colletotrichum | |
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| C. lindemuthianum on bean pods | |
Scientific classification 
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| Domain: | Eukaryota |
| Kingdom: | Fungi |
| Division: | Ascomycota |
| Class: | Sordariomycetes |
| Order: | Glomerellales |
| Family: | Glomerellaceae |
| Genus: | Colletotrichum Corda, 1831 |
| Species complexes | |
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See text | |
Colletotrichum (sexual stage: Glomerella) is a genus of fungi that are symbionts to plants as endophytes (living within the plant) or phytopathogens. Many of the species in this genus are plant pathogens, but some species may have a mutualistic relationship with hosts.[1]
History
The history of the Colletotrichum genus is a case study on the tension between the lumpers and splitters.[2] While the genus Colletotrichum was first proposed in 1831,[3] the exact definition of Colletotrichum and the species that belong in this genus has been in flux ever since.[4] The biggest recent shift has been from a definition (of both the genus and the species within it) based on morphology to a definition based on a combination of morphology and molecular phylogenetics.[5][4] The use of molecular phylogenetics has led to a huge increase in the number of recognized species in this genus, and the species are now organized into species complexes that usually have the name of their most widely known species. The name of a species when referring its namesake species complex will often have the suffix s.l. or sensu lato (in the broad sense) while that same name when referring to the specific species within the species complex will have the suffix of s.s. or sensu stricto (in the strict sense).
The most recent assessment of this genus identifies 248 species, most of which are categorized into 14 species complexes.[6] If history is any indicator of the future, then the list of species complexes and species within this genus will continue to be redefined and reorganized as more information becomes available.
Species and species complexes
Colletotrichum acutatum species complex [7]
- Colletotrichum abscissum
- Colletotrichum acerbum
- Colletotrichum acutatum sensu stricto
- Colletotrichum arboricola
- Colletotrichum australe
- Colletotrichum brisbanense
- Colletotrichum cairnsense
- Colletotrichum carthami
- Colletotrichum chrysanthemi
- Colletotrichum citri
- Colletotrichum cosmi
- Colletotrichum costaricense
- Colletotrichum cuscutae
- Colletotrichum eriobotryae
- Colletotrichum fioriniae
- Colletotrichum godetiae
- Colletotrichum guajavae
- Colletotrichum indonesiense
- Colletotrichum javanense
- Colletotrichum johnstonii
- Colletotrichum kinghornii
- Colletotrichum laticiphilum
- Colletotrichum lauri
- Colletotrichum limetticola
- Colletotrichum lupini
- Colletotrichum melonis
- Colletotrichum nymphaeae
- Colletotrichum paranaense
- Colletotrichum paxtonii
- Colletotrichum phormii
- Colletotrichum pyricola
- Colletotrichum rhombiforme
- Colletotrichum roseum
- Colletotrichum salicis
- Colletotrichum scovillei
- Colletotrichum simmondsii
- Colletotrichum sloanei
- Colletotrichum tamarilloi
- Colletotrichum walleri
- Colletotrichum wanningense
Colletotrichum agaves species complex [6]
Colletotrichum agaves sensu stricto
Colletotrichum neosansevieriae
Colletotrichum boninense species complex [8]
Colletotrichum boninense sensu stricto
Colletotrichum camelliae-japonicae
Colletotrichum novae-zelandiae
Colletotrichum dematium species complex [9]
Colletotrichum dematium sensu stricto
Colletotrichum parthenocissicola
Colletotrichum destructivum species complex [10]
Colletotrichum americae-borealis
Colletotrichum atractylodicola
Colletotrichum destructivum sensu stricto
Colletotrichum dracaenophilum species complex [11]
Colletotrichum dracaenophilum sensu stricto
Colletotrichum excelsum-altitudinum
Colletotrichum parallelophorum
Colletotrichum gigasporum species complex [12]
Colletotrichum gigasporum sensu stricto
Colletotrichum gloeosporioides species complex [13]
Colletotrichum camelliae
Colletotrichum gloeosporioides sensu stricto
Colletotrichum pseudotheobromicola
Colletotrichum graminicola-caudatum species complex [6]
Colletotrichum caudatum sensu stricto
Colletotrichum graminicola sensu stricto
Colletotrichum magnum species complex [11]
Colletotrichum magnum sensu stricto
Colletotrichum orbiculare species complex [6]
Colletotrichum orbiculare sensu stricto
Colletotrichum orchidearum species complex [11]
Colletotrichum orchidearum sensu stricto
Colletotrichum spaethianum species complex [9]
Colletotrichum spaethianum sensu stricto
Colletotrichum truncatum species complex [9]
Colletotrichum truncatum sensu stricto
Singleton species [6]
Species names that are no longer valid or have been synonymized
- Colletotrichum arachidis
- Colletotrichum capsici
- Colletotrichum coffeanum
- Colletotrichum crassipes
- Colletotrichum derridis
- Colletotrichum gossypii
- Colletotrichum mangenotii
- Colletotrichum sublineolum
References
- ^ Rodriguez, R.; Redman, R. (2008). "More than 400 million years of evolution and some plants still can't make it on their own: plant stress tolerance via fungal symbiosis". Journal of Experimental Botany. 59 (5): 1109–1114. doi:10.1093/jxb/erm342. PMID 18267941.
- ^ Hyde, Kevin David, Lei Cai, E. H. C. McKenzie, Y. L. Yang, J. Z. Zhang, and H. Prihastuti (2009). "Colletotrichum : a catalogue of confusion" (PDF). Fungal Diversity. 39.
{{cite journal}}: CS1 maint: multiple names: authors list (link) - ^ August Carl Joseph, Corda (1831). Sturm, Jakob (ed.). Deutschlands Flora in Abbildungen nach der Natur mit Beschreibungen (in German). Vol. 3. Nürnberg, Germany. pp. 33–64.
- ^ a b Cannon, P.F.; Damm, U.; Johnston, P.R.; Weir, B.S. (2012). "Colletotrichum – current status and future directions". Studies in Mycology. 73 (1): 181–213. doi:10.3114/sim0014. PMC 3458418. PMID 23136460.
- ^ Cai, L., Hyde, K.D., Taylor, P.W.J., Weir, B.S., Waller, J., Abang, M.M., Zhang, J.Z., Yang, Y.L., Phoulivong, S., Liu, Z.Y., Prihastuti, H., Shivas, R.G., McKenzie, E.H.C. and Johnston, P.R. (2009). "A polyphasic approach for studying Colletotrichum" (PDF). Fungal Diversity. 39: 183–204.
{{cite journal}}: CS1 maint: multiple names: authors list (link) - ^ a b c d e Bhunjun, Chitrabhanu S.; Phukhamsakda, Chayanard; Jayawardena, Ruvishika S.; Jeewon, Rajesh; Promputtha, Itthayakorn; Hyde, Kevin D. (2021). "Investigating species boundaries in Colletotrichum". Fungal Diversity. 107 (1): 107–127. doi:10.1007/s13225-021-00471-z. ISSN 1878-9129. S2CID 233617783.
- ^ Damm, U.; Cannon, P.F.; Woudenberg, J.H.C.; Crous, P.W. (2012). "The Colletotrichum acutatum species complex". Studies in Mycology. 73 (1): 37–113. doi:10.3114/sim0010. PMC 3458416. PMID 23136458.
- ^ Damm, U.; Cannon, P.F.; Woudenberg, J.H.C.; Johnston, P.R.; Weir, B.S.; Tan, Y.P.; Shivas, R.G.; Crous, P.W. (2012). "The Colletotrichum boninense species complex". Studies in Mycology. 73 (1): 1–36. doi:10.3114/sim0002. PMC 3458415. PMID 23136457.
- ^ a b c Jayawardena RS, Hyde KD, Damm U, Cai L, Liu M, Li XH, Zhang W, Zhao WS, and Yan JY (2016). "Notes on currently accepted species of Colletotrichum" (PDF). Mycosphere. 7 (8): 1192–1260. doi:10.5943/mycosphere/si/2c/9.
{{cite journal}}: CS1 maint: multiple names: authors list (link) - ^ Damm, U.; O'Connell, R. J.; Groenewald, J. Z.; Crous, P. W. (2014). "The Colletotrichum destructivum species complex – hemibiotrophic pathogens of forage and field crops". Studies in Mycology. 79: 49–84. doi:10.1016/j.simyco.2014.09.003. ISSN 0166-0616. PMC 4255528. PMID 25492986.
- ^ a b c Damm, U.; Sato, T.; Alizadeh, A.; Groenewald, J.Z.; Crous, P.W. (2018). "The Colletotrichum dracaenophilum, C. magnum and C. orchidearum species complexes". Studies in Mycology. 90 (1): 71–118. doi:10.1016/j.simyco.2017.11.002. ISSN 0166-0616. PMC 5738211. PMID 29276320. S2CID 37921559.
- ^ Liu, F.; Cai, L.; Crous, P.W.; Damm, U. (2014). "The Colletotrichum gigasporum species complex". Persoonia - Molecular Phylogeny and Evolution of Fungi. 33 (1): 83–97. doi:10.3767/003158514X684447. PMC 4312939. PMID 25737595.
- ^ Weir, B.S.; Johnston, P.R.; Damm, U. (2012). "The Colletotrichum gloeosporioides species complex". Studies in Mycology. 73 (1): 115–180. doi:10.3114/sim0011. PMC 3458417. PMID 23136459.
Further reading
- Cai, L.; et al. (2009). "A polyphasic approach for studying Colletotrichum" (PDF). Fungal Diversity. 39: 183–204.
- Damm, U.; Cannon, P. F.; Woudenberg, J. H. C.; Johnston, P. R.; Weir, B. S.; Tan, Y. P.; Shivas, R. G.; Crous, P. W. (September 2012). "The Colletotrichum boninense species complex". Studies in Mycology. 73 (1): 1–36. doi:10.3114/sim0002. PMC 3458415. PMID 23136457.
- Damm, U.; Baroncelli, R.; Cai, L.; Kubo, Y.; O'Connell, R.; Weir, B.; Yoshino, K.; Cannon, P. F. (2010). "Colletotrichum: species, ecology and interactions". IMA Fungus. 1 (2): 161–165. doi:10.5598/imafungus.2010.01.02.08. PMC 3348780. PMID 22679575.
- Hyde, K. D. et al. 2009. Colletotrichum - names in current use. Fungal Diversity 39 147–83.
- Weir, B. S.; Johnston, P. R. (2010). "Characterisation and neotypification of Gloeosporium kaki Hori as Colletotrichum horii nom. nov". Mycotaxon. 111 (1): 209–219. doi:10.5248/111.209.
- Vieira, W. A. S.; Lima, W. G.; Nascimento, E. S.; Michereff, S. J.; Câmara, M. P. S.; Doyle, V. P. (2018). "The impact of phenotypic and molecular data on the inference of Colletotrichum diversity associated with Musa". Mycologia. 109 (6): 912–934. doi:10.1080/00275514.2017.1418577. PMID 29494311. S2CID 3611193.
- Liu, F.; Tang, G.; Zheng, X.; Li, Y.; Sun, X.; Qi, X.; Zhou, Y.; Xu, J.; Chen, H.; Chang, X.; Zhang, S.; Gong, G. (2016). "Molecular and phenotypic characterization of Colletotrichum species associated with anthracnose disease in peppers from Sichuan Province, China". Scientific Reports. 6 (1): 32761. Bibcode:2016NatSR...632761L. doi:10.1038/srep32761. PMC 5016793. PMID 27609555.
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