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Cadherin related family member 3

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CDHR3
Identifiers
AliasesCDHR3, CDH28, cadherin related family member 3
External IDsOMIM: 615610; MGI: 1916014; HomoloGene: 45146; GeneCards: CDHR3; OMA:CDHR3 - orthologs
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_001301161
NM_152750

NM_001024478

RefSeq (protein)

NP_001288090
NP_689963

NP_001019649

Location (UCSC)Chr 7: 105.88 – 106.04 MbChr 12: 33.08 – 33.14 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Cadherin related family member 3 (CDHR3), also known as CDH28 or its abbreviation CDHR3, is a protein that in humans is encoded by the CDHR3 gene. [5] The protein is predominately expressed in respiratory epithelium[6] and the first notion of its clinical implications was from the discovery that genetic variation of CDHR3 is strongly associated to early severe asthma exacerbations in children.[7] Subsequent studies have suggested that CDHR3 is a receptor for a subtype of rhinovirus.[8][9]

Function and cellular location

The exact physiological role of CDHR3 is not known, but as the CDHR3 protein is expressed in epithelial tissues and has six extracellular cadherin domains plus a short transmembrane segment, it is believed to be related to the function of similar cadherins which function in cell adhesion and cell-to-cell signaling.[7] Two single-cell RNA expression studies furthermore found CDHR3 to be highly selectively expressed in ciliated epithelial cells, compared to other cell types in the respiratory epithelium, and thereby to be a marker for ciliated cells in respiratory airway tissue[10][11].

Clinical significance

A nonsynonymous mutation in CDHR3 at rs6967330 (C529Y) was at first found to be associated with severe asthma exacerbations in early childhood, with genome-wide significance. Functional experiments further indicated that this gene polymorphism leads to increased surface expression of the CDHR3 protein.[7] A subsequent study found that CDHR3 is a probable receptor for rhinovirus type C, a common form of rhinovirus.[8]

Recent studies furthermore found that CDHR3 gene variation is not associated with childhood bronchiolitis from respiratory syncytial virus (RSV) infection,[9] which resemble early asthma exacerbations as a phenotype. However, childhood bronchiolitis not caused by RSV infection, of which rhinovirus is often implicated, was associated with the CDHR3 gene variation. This is line with the results from a study on chronic rhinosinusitis, which often is associated rhinovirus infection, where CDHR3 gene variation also was found to be a strong risk factor.[12] Therefore, CDHR3 seems to causally linked to increased propensity for rhinovirus C infection.

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000128536Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000035860Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ "Entrez Gene: Cadherin related family member 3". Retrieved 2017-09-05.
  6. ^ "Tissue expression of CDHR3 - Summary - The Human Protein Atlas". www.proteinatlas.org. Retrieved 2017-09-05.
  7. ^ a b c Bønnelykke, Klaus; Sleiman, Patrick; Nielsen, Kasper; Kreiner-Møller, Eskil; Mercader, Josep M; Belgrave, Danielle; Dekker, Herman T den; Husby, Anders; Sevelsted, Astrid (2013). "A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations". Nature Genetics. 46 (1): 51–55. doi:10.1038/ng.2830. PMID 24241537.
  8. ^ a b Bochkov, Yury A.; Watters, Kelly; Ashraf, Shamaila; Griggs, Theodor F.; Devries, Mark K.; Jackson, Daniel J.; Palmenberg, Ann C.; Gern, James E. (2015-04-28). "Cadherin-related family member 3, a childhood asthma susceptibility gene product, mediates rhinovirus C binding and replication". Proceedings of the National Academy of Sciences. 112 (17): 5485–5490. Bibcode:2015PNAS..112.5485B. doi:10.1073/pnas.1421178112. ISSN 0027-8424. PMC 4418890. PMID 25848009.
  9. ^ a b Husby, Anders; Pasanen, Anu; Waage, Johannes; Sevelsted, Astrid; Hodemaekers, Hennie; Janssen, Riny; Karjalainen, Minna K.; Stokholm, Jakob; Chawes, Bo L. (2017). "CDHR3 gene variation and childhood bronchiolitis". Journal of Allergy and Clinical Immunology. 140 (5): 1469–1471.e7. doi:10.1016/j.jaci.2017.06.044. PMC 5675819. PMID 28782631.
  10. ^ Montoro, Daniel T; Haber, Adam L; Biton, Moshe; Vinarsky, Vladimir; Lin, Brian; Birket, Susan E; Yuan, Feng; Chen, Sijia; Leung, Hui Min; Villoria, Jorge; Rogel, Noga; Burgin, Grace; Tsankov, Alexander M; Waghray, Avinash; Slyper, Michal; Waldman, Julia; Nguyen, Lan; Dionne, Danielle; Rozenblatt-Rosen, Orit; Tata, Purushothama Rao; Mou, Hongmei; Shivaraju, Manjunatha; Bihler, Hermann; Mense, Martin; Tearney, Guillermo J; Rowe, Steven M; Engelhardt, John F; Regev, Aviv; Rajagopal, Jayaraj (2018). "A revised airway epithelial hierarchy includes CFTR-expressing ionocytes". Nature. 560 (7718): 319–324. doi:10.1038/s41586-018-0393-7. PMID 30069044.
  11. ^ https://doi.org/10.1038/s41586-018-0449-8
  12. ^ Chang, Eugene H.; Willis, Amanda L.; McCrary, Hilary C.; Noutsios, George T.; Le, Christopher H.; Chiu, Alexander G.; Mansfield, Corrine J.; Reed, Danielle R.; Brooks, Steven G. (2017). "Association between the CDHR3 rs6967330 risk allele and chronic rhinosinusitis". Journal of Allergy and Clinical Immunology. 139 (6): 1990–1992.e2. doi:10.1016/j.jaci.2016.10.027. PMC 5457723. PMID 27923563.

Further reading