Jump to content

User:DKEdwards005/sandbox genome

From Wikipedia, the free encyclopedia

From: https://www.ncbi.nlm.nih.gov/genome/browse/#!/eukaryotes/. Filtering must include "exclude partial" and "exclude anomalous".

If no publication date, then included when submitted to BioProject.

Ignore mitochondrial genome publications, etc., that doesn't include the full sequences. Includes This is a first draft reference genome.

Amphibians

[edit]
Organism name Strain Assembly level Genome size (Mb) Number of predicted genes Organization GenBank assembly identifier Publication date
Xenopus tropicalis Nigerian Chromosome 1,440.4 26,496 DOE Joint Genome Institute GCA_000004195.3 2010[1]
Xenopus laevis J Chromosome 2,718.43 36,776 International Xenopus Sequencing Consortium GCA_001663975.1 2016[2]
Ambystoma mexicanum DD151 Scaffold 32,393.6 0 (NA) Max Planck Society GCA_002915635.1 2018[3]
Rana catesbeiana Scaffold 6,250.35 22,238 BC Cancer Agency GCA_002284835.2 2017[4]
Nanorana parkeri Scaffold 2,053.87 21,171 BGI-Shenzhen GCA_000935625.1 2015[5]

Reptiles

[edit]
Organism name Strain Assembly level Genome size (Mb) Genes (from NCBI Genome) Organization GenBank assembly identifier Publication date
Alligator mississippiensis Scaffold 2156.98 25,012 International Crocodilian Genomes Working Group GCA_000281125.4 2012[6]; additional work by Dovetail Genomics in 2017[7]
Alligator sinensis Scaffold 2270.57 22,098 BGI-shenzhen GCA_000455745.1 2013[8]
Anolis carolinensis Chromosome 1799.14 22,092 Broad Institute GCA_000090745.2 2011[9]
Apalone spinifera Scaffold 1931.08 NA WUGSC GCA_000385615.1 Submitted 2013[10]
Chelonia mydas Scaffold 2208.41 19,323 BGI GCA_000344595.1 2013[11]
Chrysemys picta bellii Chromosome 2365.77 24,356 Painted turtle genome sequencing consortium GCA_000241765.2 2013[12]
Crocodylus porosus Scaffold 2049.54 19,551 Mississippi State University GCA_001723895.1 Described in 2012[13]; Published in 2014[14]
Crocodylus porosus Scaffold 2120.57 NA The International Crocodilian Genomes Working Group GCA_000768395.1 [NEED TO RESOLVE]
Crotalus horridus Scaffold 1520.33 NA Timber Rattlesnake Genome GCA_001625485.1 Submitted 2016[15]
Crotalus pyrrhus Scaffold 1126.79 NA Reed College GCA_000737285.1 2014[16]
Gekko japonicus Scaffold 2490.27 21,426 Nantong University GCA_001447785.1 2016[17]
Gopherus agassizii Scaffold 2184.97 20,172[18] Arizona State University GCA_002896415.1 2017[19]
Malaclemys terrapin terrapin Contig 2439.75 13 University of Maryland GCA_001728815.2 Submitted 2016[20]
Ophiophagus hannah Scaffold 1594.07 18,558 Naturalis Biodiversity Center GCA_000516915.1 2013[21]
Pantherophis guttatus Scaffold 1404.22 NA University of Geneva GCA_001185365.1 2014[22]
Pelodiscus sinensis Scaffold 2202.48 21,622 P. sinensis genome project consortium GCA_000230535.1 2014[23]
Pogona vitticeps Scaffold 1716.68 21,747 BRAEMBL GCA_900067755.1 2015[24]
Protobothrops mucrosquamatus Scaffold 1673.88 21,073 Okinawa Institute of Science and Technology GCA_001527695.3 2013[25]; 2017[26]
Python bivittatus Scaffold 1435.05 19,862 The Consortium for Comparative Genomics, UC Denver, Washington University GCA_000186305.2 Described in 2011[27]; Submitted 2013[28]
Terrapene mexicana triunguis Scaffold 2323.11 NA Saint Louis Zoo Box Turtle Project GCA_002925995.1 Submitted 2018[29]
Thamnophis sirtalis Scaffold 1424.9 20,101 The Genome Institute at Washington University School of Medicine (WUGSC) GCA_001077635.2 2014[30]
Vipera berus berus Scaffold 1532.39 NA BCM-HGSC GCA_000800605.1 Submitted 2014[31]

Fishes

[edit]
Organism name Strain Assembly level Genome size (Mb) Number of predicted genes Organization GenBank assembly identifier Publication date
Acanthochromis polyacanthus Scaffold 991.585 27009 King Abdullah University of Science and technology GCA_002109545.1 Submitted 2017[32]
Amphilophus citrinellus Scaffold 844.903 0 UNIVERSITY OF KONSTANZ GCA_000751415.1 Submitted 2014[33]
Amphiprion ocellaris Scaffold 880.721 26097 Deakin University GCA_002776465.1 Submitted 2017[34]
Anguilla anguilla Scaffold 1018.7 0 ZF-screens B.V. GCA_000695075.1 Submitted 2014[35]
Anguilla japonica Scaffold 1151.07 0 GCA_002723815.1
Anguilla japonica Scaffold 1151.14 0 GCA_000470695.1
Anguilla rostrata Scaffold 1413.03 0 Universite Laval GCA_001606085.1 Submitted 2016[36]
Anoplopoma fimbria Contig 699.326 0 University of Victoria GCA_000499045.1 2013[37]
Astyanax mexicanus Chromosome 1335.24 30815 Aquatic Genome Models (Washington University School of Medicine) GCA_000372685.2 2014[38]
Austrofundulus limnaeus Quisiro Scaffold 866.963 26706 Center for Life in Extreme Environments at Portland State University, Portland, OR

- The Genome Institute - Washington University School of Medicine

GCA_001266775.1 Submitted 2015[39]
Boleophthalmus pectinirostris Scaffold 955.752 22665 BGI-shenzhen GCA_000788275.1 2014[40]
Callorhinchus milii Scaffold 974.499 33094 Institute of Molecular and Cell Biology, Singapore GCA_000165045.2 2007[41]; 2014[42]
Clupea harengus Scaffold 807.712 25434 BGI GCA_000966335.1 Submitted 2015[43]
Coryphaenoides rupestris Scaffold 829.209 0 - Centre for Genomic Research

- Molecular Ecology Group, Department of Biosciences, Durham University

GCA_002895965.1 Submitted 2018[44]
Cottus rhenanus Naaf Scaffold 563.609 0 Cold Spring Harbor Laboratory GCA_001455555.1 Submitted 2015[45]
Cynoglossus semilaevis Chromosome 470.199 24279 Beijing Genomics Institute GCA_000523025.1 2014[46]
Cyprinodon nevadensis pectoralis Scaffold 1011.85 0 University of Colorado, Boulder GCA_000776015.1 Submitted 2014[47]
Cyprinodon variegatus Scaffold 1035.18 24878 Aquatic Genome Models (Washington University School of Medicine) GCA_000732505.1
Cyprinus carpio Chromosome 1713.66 66544 GCA_000951615.2
Cyprinus carpio Scaffold 1380.1 50485 GCA_001270105.1
Danio rerio Tuebingen Chromosome 1679.2 46998 GCA_000002035.4
Danio rerio Tuebingen Scaffold 1411.76 0 GCA_000767325.1
Danio rerio Tuebingen Scaffold 1442.82 0 GCA_001487895.1
Danio rerio CG2 Scaffold 1228.67 0 GCA_001483285.1
Dicentrarchus labrax Scaffold 675.917 0 Max Planck Institute for Plant Breeding Research GCA_000689215.1 2014[48]
Eptatretus burgeri Scaffold 2608.38 0 RIKEN CENTER FOR DEVELOPMENTAL BIOLOGY GCA_900186335.2 Submitted 2017[49]
Esox lucius Chromosome 904.497 26881 University of Victoria GCA_000721915.3 2014[50]
Fundulus heteroclitus Scaffold 1021.9 25849 The Genome Institute at Washington University School of Medicine GCA_000826765.1 Submitted 2015[51]
Gadus morhua Scaffold 824.311 0 Genofisk (Norwegian High-Throughput Sequencing Centre, University of Oslo) GCA_000231765.1 2011[52]
Gasterosteus aculeatus Contig 446.611 0 Broad Institute GCA_000180675.1 Submitted 2006[53]
Haplochromis burtoni Scaffold 831.412 26625 Broad Institute GCA_000239415.1 2014[54]
Hippocampus comes Scaffold 493.776 25471 South China Sea Institute of Oceanology, Chinese Academy of Sciences GCA_001891065.1 2016[55]
Ictalurus punctatus Chromosome 783.275 27156 Auburn University GCA_001660625.1 2016[56]
Kryptolebias marmoratus Scaffold 680.367 23485 GCA_001649575.1
Kryptolebias marmoratus RHL Scaffold 653.96 0 GCA_001663955.1
Labeotropheus fuelleborni Domwe Island Scaffold 70.8584 0 GCA_000150875.1
Labrus bergylta Scaffold 805.481 28378 The National Institute of Nutrition and Seafood Research GCA_900080235.1 Submitted 2016[57]
Larimichthys crocea Scaffold 678.938 27103 GCA_000972845.1
Larimichthys crocea Scaffold 648.407 0 GCA_000742935.1
Lates calcarifer Scaffold 668.481 30224 GCA_001640805.1
Lates calcarifer Contig 605.008 0 GCA_900066045.1
Lates calcarifer Scaffold 589.095 0 GCA_001010145.1
Lates calcarifer Scaffold 668.465 0 GCA_900066035.1
Latimeria chalumnae Scaffold 2860.59 26117 GCA_000225785.1
Latimeria chalumnae Scaffold 2736.33 0 GCA_000325985.2
Lepisosteus oculatus Chromosome 945.878 21770 Broad Institute GCA_000242695.1 Submitted 2011[58]
Lethenteron camtschaticum Scaffold 1030.66 0 Institute of Molecular and Cell Biology GCA_000466285.1 Submitted 2013[59]
Leuciscus waleckii Scaffold 752.539 0 Chinese Academy of Fishery Sciences GCA_900092035.1 Submitted 2016[60]
Leucoraja erinacea Contig 1555.46 13 North East Cyberinfrastructure Consortium (Mount Desert Island Biological Laboratory) GCA_000238235.1
Maccullochella peelii Scaffold 633.241 0 Monash University Malaysia GCA_002120245.1 Submitted 2017[61]
Maylandia zebra Scaffold 859.842 27143 Broad Institute, University of Maryland GCA_000238955.3 2014[62]; 2015[63]
Mchenga conophoros Otter Point Scaffold 73.4256 0 Cichlid Genome Consortium (Joint Genome Institute, School of Biology, Georgia Institute of Technology) GCA_000150855.1 2008[64]
Melanochromis auratus Domwe Island Scaffold 68.2386 0 Cichlid Genome Consortium (Joint Genome Institute, School of Biology, Georgia Institute of Technology) GCA_000150895.1 2008[64]
Micropterus floridanus Contig 1001.52 0 Auburn University GCA_002592385.1 Submitted 2017[65]
Miichthys miiuy Scaffold 619.301 0 Zhejiang Ocean University GCA_001593715.1 2016[66]
Mola mola Scaffold 639.452 0 BGI-shenzhen GCA_001698575.1 Submitted 2016[67]
Monopterus albus Scaffold 684.144 23830 Wuhan University GCA_001952655.1 Submitted 2017
Morone saxatilis Scaffold 585.167 0 Striped Bass Genomics (North Carolina State University) GCA_001663605.1 Submitted 2016[68]
Neolamprologus brichardi Scaffold 847.91 25031 Broad Institute GCA_000239395.1 2014[69]
Nothobranchius furzeri GRZ Chromosome 1242.52 25026 GCA_001465895.2
Nothobranchius furzeri Scaffold 1022.97 0 GCA_000878545.1
Notothenia coriiceps Scaffold 636.614 26863 Antarctic Fish Genome Project (DNA Link, Inc., Korea Polar Research Institute) GCA_000735185.1 2014[70]
Oncorhynchus kisutch Chromosome 2369.93 44786 University of Victoria GCA_002021735.1 Submitted 2016[71]
Oncorhynchus mykiss Chromosome 2179 51000 GCA_002163495.1
Oncorhynchus mykiss Chromosome 1877.56 46585 GCA_900005705.1
Oncorhynchus tshawytscha Chromosome 2425.7 0 GCA_002872995.1
Oncorhynchus tshawytscha Chromosome 2362.28 0 GCA_002831465.1
Oreochromis niloticus Chromosome 1009.86 37427 GCA_001858045.2
Oreochromis niloticus Chromosome 927.696 0 GCA_000188235.2
Oryzias latipes Hd-rR Chromosome 734.057 13 GCA_002234675.1
Oryzias latipes HSOK Chromosome 744.414 0 GCA_002234695.1
Oryzias latipes HNI Chromosome 677.633 0 GCA_002234715.1
Oryzias latipes Hd-rR Chromosome 869.818 0 GCA_000313675.1
Oryzias latipes HNI Scaffold 662.701 0 GCA_000151825.1
Oryzias melastigma HK-1 Scaffold 779.453 0 Sungkyunkwan University GCA_002922805.1 Submitted 2018[72]
Pagrus major Scaffold 875.465 0 Center for Marine Environmental Studies, Ehime University GCA_002897255.1 2017[73]
Pampus argenteus Scaffold 350.449 0 Kuwait Institute for Scientific Research (KISR) GCA_000697985.1 2016[74]
Paralichthys olivaceus Scaffold 643.911 24567 GCA_001970005.2
Paralichthys olivaceus Chromosome 545.775 0 GCA_001904815.2
Paramormyrops kingsleyae Scaffold 799.421 0 Michigan State University GCA_002872115.1 2017[75]
Periophthalmodon schlosseri Scaffold 679.761 0 BGI-Shenzhen GCA_000787095.1 2014[76]
Periophthalmus magnuspinnatus Scaffold 701.697 0 BGI-shenzhen GCA_000787105.1 2014[76]
Petromyzon marinus Scaffold 1130.42 0 GCA_002833325.1
Petromyzon marinus Scaffold 885.535 0 GCA_000148955.1
Pimephales promelas Scaffold 1219.33 0 GCA_000700825.1
Pimephales promelas Scaffold 957.81 0 GCA_000700965.1
Poecilia formosa Scaffold 748.923 31585 Aquatic Genome Models (Washington University School of Medicine) GCA_000485575.1 Submitted 2013[77]
Poecilia latipinna Scaffold 815.145 30571 The Genome Institute at Washington University School of Medicine (WUGSC) GCA_001443285.1 Submitted 2015[78]
Poecilia mexicana Scaffold 801.711 30746 The Genome Institute at Washington University School of Medicine (WUGSC) GCA_001443325.1 Submitted 2015[79]
Poecilia reticulata Guanapo Chromosome 731.622 26373 Max Planck Institute for Developmental Biology GCA_000633615.2 2015[80]
Pseudopleuronectes yokohamae Contig 547.831 0 Tohoku university GCA_000787555.1 2015[81]
Pundamilia nyererei Scaffold 830.133 24446 Broad Institute GCA_000239375.1 2014[82]
Pygocentrus nattereri Scaffold 1285.35 28178 McDonnell Genome Institute - Washington University School of Medicine GCA_001682695.1 Submitted 2016[83]
Rhamphochromis esox Otter Point Scaffold 71.2951 0 Cichlid Genome Consortium (Joint Genome Institute, School of Biology, Georgia Institute of Technology) GCA_000150935.1 2008[64]
Rhincodon typus Scaffold 2931.6 24529 University of Victoria GCA_001642345.2 Submitted 2018[84]
Salmo salar Chromosome 2966.89 59213 International Cooperation to Sequence the Atlantic Salmon Genome GCA_000233375.4
Salvelinus alpinus Chromosome 1516.05 33552 GCA_002910315.1
Scartelaos histophorus Scaffold 695.009 0 BGI-shenzhen GCA_000787155.1 2014[85]
Scleropages formosus Scaffold 777.359 24709 GCA_001624265.1
Scleropages formosus Scaffold 746.544 0 GCA_001624245.1
Scleropages formosus Scaffold 738.407 0 GCA_001624255.1
Scleropages formosus Scaffold 708.403 24736 GCA_001005745.2
Sebastes aleutianus Scaffold 899.65 0 USC GCA_001910805.2 Submitted 2016[86]
Sebastes minor Scaffold 681.653 0 USC GCA_001910765.2 Submitted 2016[87]
Sebastes nigrocinctus Scaffold 746.045 0 USC GCA_000475235.3 Submitted 2013[88]
Sebastes rubrivinctus Scaffold 756.297 0 University of Southern California GCA_000475215.1 Submitted 2013[89]
Sebastes steindachneri Scaffold 648.011 0 USC GCA_001910785.2 Submitted 2016[90]
Seriola dumerili Scaffold 677.686 24086 Genomic breeding group, Research Center for Aquatic Breeding, National Research Institute of aquaculture, FRA GCA_002260705.1 Submitted 2017[91]
Seriola lalandi dorsalis Scaffold 732.51 28255 Iowa State University GCA_002814215.1 Submitted 2017[92]
Seriola quinqueradiata Scaffold 639.27 0 GCA_002217815.1
Seriola quinqueradiata Scaffold 861.629 0 GCA_002207885.1
Sinocyclocheilus anshuiensis Scaffold 1632.72 50985 BGI, Shenzhen GCA_001515605.1 2016[93]
Sinocyclocheilus grahami Scaffold 1750.29 54207 BGI, Shenzhen GCA_001515645.1 2016[93]
Sinocyclocheilus rhinocerous Scaffold 1655.79 52111 BGI, Shenzhen GCA_001515625.1 2016[93]
Stegastes partitus Scaffold 800.492 24580 Aquatic Genome Models (Washington University School of Medicine) GCA_000690725.1 Submitted 2014[94]
Symphodus melops Contig 614.569 0 University of Agder GCA_002819105.1 Submitted 2016[95]
Takifugu flavidus Scaffold 378.032 0 IOCAS GCA_000400755.1 2014[96]
Takifugu rubripes Chromosome 391.485 23164 The Fugu Genome Sequencing Consortium (Institute of Molecular

and Cell Biology, Singapore; DOE Joint Genome Institute)

GCA_000180615.2 2002[97]; 2011[98]
Tetraodon nigroviridis Scaffold 342.403 27918 Genoscope GCA_000180735.1 2014[99]
Thunnus orientalis Contig 684.497 0 National Research Institute of Fisheries Science GCA_000418415.1 2013[100]
Xiphophorus couchianus Scaffold 708.396 0 McDonnell Genome Institute - Washington University School of Medicine GCA_001444195.1 2016[101]
Xiphophorus hellerii Sarabia Scaffold 733.802 0 McDonnell Genome Institute - Washington University School of Medicine

**these two seem to be mistaken: These two institutes didn't publish

anything on those species, instead, they published on the Maculatus

and I don't know why they're listed here**

GCA_001443345.1 2016[101]
Xiphophorus maculatus JP 163 A Chromosome 704.321 27213 GCA_002775205.2
Xiphophorus maculatus JP 163 A Scaffold 729.664 0 GCA_000241075.1

Birds

[edit]
Organism name Strain Assembly level Genome size (Mb) Number of predicted genes Organization GenBank assembly identifier Publication date
Acanthisitta chloris Scaffold 1035.88 15175 BGI GCA_000695815.1 2014[102]
Acridotheres javanicus Scaffold 1051.58 0 National University of Singapore GCA_002849675.1 2018[103]
Agapornis roseicollis Scaffold 1121.79 0 North West University GCA_002631895.1 2017[104]
Amazona aestiva Scaffold 1129.54 16307 LNCC GCA_001420675.1 Submitted 2015[105]
Amazona vittata Scaffold 1175.4 0 Puerto Rican Parrot Genome Project (University of Puerto Rico at Mayaguez) GCA_000332375.1 2012[106]
Anas platyrhynchos Scaffold 1105.05 21727 GCA_000355885.1
Anas platyrhynchos Scaffold 1265.07 0 GCA_002224895.1
Anas platyrhynchos platyrhynchos Chromosome 1136.42 0 China Agricultural University GCA_002743455.1 Submitted 2017[107]
Anas zonorhyncha Scaffold 1310.8 0 BGI GCA_002224875.1 Submitted 2017[108]
Anser brachyrhynchus PFG001 Scaffold 1116.99 0 Aarhus University, Denmark GCA_002592135.1 2018[109]
Anser cygnoides Scaffold 1130.28 0 Poultry Science Institute GCA_002166845.1 2016[110]
Anser cygnoides domesticus Scaffold 1119.15 20800 Anser cygnoides Genome consortium

- Institute of Zhejiang Academy of Agricultural sciences

- Beijing Genomics Institute

GCA_000971095.1 2015[111]
Antrostomus carolinensis Scaffold 1119.68 15541 BGI GCA_000700745.1 2014[102]
Apaloderma vittatum Scaffold 1070.84 14490 BGI GCA_000703405.1 2014[102]
Aptenodytes forsteri Scaffold 1254.35 15366 BGI GCA_000699145.1 2014[102]
Apteryx australis mantelli Scaffold 1523.97 18494 MPI-EVA GCA_001039765.1 2015[112]
Aquila chrysaetos canadensis Scaffold 1192.74 17520 GCA_000766835.1
Aquila chrysaetos canadensis Scaffold 1548.48 0 GCA_000696035.1
Ara macao Scaffold 1204.7 0 GCA_000400695.1
Ara macao Contig 1035.92 0 GCA_000400545.1
Balearica regulorum gibbericeps Scaffold 1127.62 15122 BGI GCA_000709895.1 2014[102]
Bambusicola thoracicus Scaffold 1032.3 17763 University of Florida GCA_002909625.1 Submitted 2018[113]
Buceros rhinoceros silvestris Scaffold 1065.78 14483 BGI GCA_000710305.1 2014[102]
Calidris pugnax Scaffold 1229.09 18583 GCA_001431845.1
Calidris pugnax Scaffold 1173.2 0 GCA_001458055.1
Callipepla squamata Texas Scaffold 1045.28 17131 Texas A&M University GCA_002218305.1 2017[114]
Calypte anna Scaffold 1105.68 14812 GCA_000699085.1
Calypte anna Contig 2021.12 0 GCA_002021895.1
Cariama cristata Scaffold 1132.25 15124 BGI GCA_000690535.1 2014[102]
Cathartes aura Scaffold 1152.57 11866 BGI GCA_000699945.1 2014[102]
Chaetura pelagica Scaffold 1119.19 14343 BGI GCA_000747805.1 2014[102]
Charadrius vociferus Scaffold 1219.86 14731 BGI GCA_000708025.2 2014[102]
Chlamydotis macqueenii Scaffold 1086.57 14765 BGI GCA_000695195.1 2014[102]
Ciconia boyciana Scaffold 1364.95 0 Laboratory of Ecogenetics, Environmental Biology Division, National Institute for Environmental Studies GCA_002002965.1 Submitted 2016[115]
Colinus virginianus Texas Scaffold 1254.15 17165 GCA_000599465.2
Colinus virginianus Texas Scaffold 1042.05 0 GCA_000599485.1
Colius striatus Scaffold 1075.93 15009 BGI GCA_000690715.1 2014[102]
Columba livia Chromosome 1018.02 0 GCA_001887795.1
Columba livia Scaffold 1107.99 26430 GCA_000337935.1
Corvus brachyrhynchos Scaffold 1091.31 19146 BGI GCA_000691975.1 2014[102]
Corvus cornix cornix Scaffold 1042.28 17215 GCA_000738735.2
Corvus cornix cornix Scaffold 1050.11 0 GCA_002023255.2
Coturnix japonica Chromosome 927.657 20441 GCA_001577835.1
Coturnix japonica L Scaffold 898.142 0 GCA_000511605.2
Cuculus canorus Scaffold 1153.89 15045 BGI GCA_000709325.1 2014[102]
Egretta garzetta Scaffold 1206.5 14431 College of Medicine and Forensics, Xi'an Jiaotong University GCA_000687185.1 2014[116][117]
Eurypyga helias Scaffold 1088.02 14812 BGI GCA_000690775.1 2014[102]
Falco cherrug Scaffold 1174.81 15380 BGI GCA_000337975.1 2013[118]
Falco peregrinus Scaffold 1171.97 15567 GCA_000337955.1
Falco peregrinus Chromosome 1112.06 0 GCA_001887755.1
Ficedula albicollis Chromosome 1118.34 16785 Uppsala University GCA_000247815.2 2012[119]
Fulmarus glacialis Scaffold 1141.4 15228 BGI GCA_000690835.1 2014[102]
Gallirallus okinawae Contig 1114.53 0 Laboratory of Ecogenetics, Environmental Biology Division, National Institute for Environmental Studies GCA_002003005.1 Submitted 2016[120]
Gallus gallus Chromosome 1230.26 25062 GCA_000002315.3
Gallus gallus Chromosome 1021.02 0 GCA_002798355.1
Gavia stellata Scaffold 1129.69 14770 BGI GCA_000690875.1 2014[102]
Geospiza fortis Scaffold 1065.29 14568 Beijing Genomics Institute GCA_000277835.1 2014[102]
Grus japonensis Scaffold 1265.63 0 Laboratory of Ecogenetics, Environmental Biology Division, National Institute for Environmental Studies GCA_002002985.1 Submitted 2016[121]
Haliaeetus albicilla Scaffold 1133.55 15162 BGI GCA_000691405.1 2014[102]
Haliaeetus leucocephalus Scaffold 1178.41 15817 The Bald Eagle Consortium

- The Genome Institute - Washington University School of Medicine

GCA_000737465.1 Submitted 2014[122]
Lepidothrix coronata Scaffold 1079.58 18695 McDonnell Genome Institute - Washington University School of Medicine GCA_001604755.1 Submitted 2016[123]
Leptosomus discolor Scaffold 1136.24 15300 BGI GCA_000691785.1 2014[102]
Limosa lapponica baueri Scaffold 1034.77 22862 Universidade Federal do Rio de Janeiro GCA_002844005.1 Submitted 2017[124]
Lonchura striata domestica Scaffold 1060.17 17483 HHMI/UCSF GCA_002197715.1 2016[125]
Lyrurus tetrix tetrix Contig 657.025 0 Uppsala University GCA_000586395.1 Submitted 2014[126]
Manacus vitellinus Scaffold 1213.42 18472 GCA_001715985.1
Manacus vitellinus Scaffold 1145.85 14312 GCA_000692015.2
Meleagris gallopavo Chromosome 1128.34 26366 Turkey Genome Consortium

- Virginia Bioinformatics Institute, USA, Blacksburg

- Uninversity of Maryland, USA, College Park.

- Virginia Tech, Animal and Poultry Sciences

GCA_000146605.3 2010[127]
Melopsittacus undulatus Scaffold 1117.37 14536 Duke University Genome Center

- The Genome Institute, Washington University at St. Louis

GCA_000238935.1 Submitted 2011[128]
Merops nubicus Scaffold 1062.96 14658 BGI GCA_000691845.1 2014[102]
Mesitornis unicolor Scaffold 1087.29 15719 BGI GCA_000695765.1 2014[102]
Nannopterum auritus Scaffold 1246.05 0 UCLA GCA_002173455.1 2017[129]
Nannopterum brasilianus Scaffold 1346.19 0 UCLA GCA_002174335.1 2017[129]
Nannopterum harrisi Scaffold 1202.99 0 UCLA GCA_002173475.1 2017[129]
Nestor notabilis Scaffold 1053.56 14860 BGI GCA_000696875.1 2014[102]
Nipponia nippon Scaffold 1223.86 15343 College of Medicine and Forensics, Xi'an Jiaotong University GCA_000708225.1 2014[116][117]
Numida meleagris Chromosome 1043.26 21748 INRA GCA_002078875.2 Submitted 2017[130]
Opisthocomus hoazin Scaffold 1203.71 13615 BGI GCA_000692075.1 2014[102]
Parus major Chromosome 1020.31 18717 Animal Breeding and Genomics Centre, Wageningen University GCA_001522545.2 2016[131]
Passer domesticus Chromosome 1042.72 0 Sparrow Genome Consortium

- University of Oslo

GCA_001700915.1 Submitted 2016[132]
Patagioenas fasciata monilis Scaffold 1089.15 19528 University of California, Santa Cruz GCA_002029285.1 Submitted 2017[133]
Pelecanus crispus Scaffold 1160.92 15382 BGI GCA_000687375.1 2014[102]
Phaethon lepturus Scaffold 1152.96 15174 BGI GCA_000687285.1 2014[102]
Phalacrocorax carbo Scaffold 1138.97 14501 BGI GCA_000708925.1 2014[102]
Phoenicopterus ruber ruber Scaffold 1132.18 12601 BGI GCA_000687265.1 2014[102]
Phylloscopus plumbeitarsus Scaffold 997.399 0 University of British Columbia GCA_001655115.1 2016[134]
Phylloscopus trochiloides trochiloides Scaffold 975.892 0 University of British Columbia GCA_001655135.1 2016[134]
Phylloscopus trochiloides viridanus Scaffold 1003.33 0 The University of British Columbia GCA_001655095.1 2014[135]
Phylloscopus trochilus acredula Scaffold 1066.52 0 Lund University GCA_002305835.1 Submitted 2016[136]
Picoides pubescens Scaffold 1167.32 14443 BGI GCA_000699005.1 2014[102]
Podiceps cristatus Scaffold 1134.92 12155 BGI GCA_000699545.1 2014[102]
Pseudopodoces humilis Scaffold 1043 16561 Beijing Genomics Institute (BGI)-Shenzhen GCA_000331425.1 2013[137]
Psittacula krameri Scaffold 1417.81 0 DICE GCA_002870145.1 Submitted 2018[138]
Pterocles gutturalis Scaffold 1069.32 14969 BGI GCA_000699245.1 2014[102]
Pygoscelis adeliae Scaffold 1216.62 14407 BGI GCA_000699105.1 2014[102]
Saxicola maurus maurus Scaffold 1020.37 0 UNIVERSITY OF OXFORD GCA_900205225.1 Submitted 2017[139]
Serinus canaria Scaffold 1152.1 17797 MPI MOLGEN GCA_000534875.1 Submitted 2014[140]
Setophaga coronata coronata Scaffold 1171.93 0 Cornell University GCA_001746935.1 2016[141]
Sporophila hypoxantha Scaffold 1067.76 0 Cornell University GCA_002167245.1 2017[142]
Strix occidentalis caurina Scaffold 1255.54 0 California Academy of Sciences GCA_002372975.1 2017[143]
Struthio camelus australis Scaffold 1225.04 16560 BGI GCA_000698965.1 2014[102]
Sturnus vulgaris Scaffold 1036.76 16813 Starling Genome Consortium

- McDonnell Genome Institute - Washington University School of Medicine

GCA_001447265.1 Submitted 2015[144]
Taeniopygia guttata Chromosome 1232.14 17357 GCA_000151805.2
Taeniopygia guttata Contig 1982.69 0 GCA_002008985.2
Tauraco erythrolophus Scaffold 1155.54 15059 BGI GCA_000709365.1 2014[102]
Tinamus guttatus Scaffold 1047.06 16739 BGI GCA_000705375.2 2014[102]
Tympanuchus cupido pinnatus Scaffold 983.777 0 Revive & Restore Heath Hen De-extinction Team

- The Long Now Foundation

GCA_001870855.1 Submitted 2016[145]
Tyto alba Scaffold 1120.14 13995 BGI GCA_000687205.1 2014[102]
Uria lomvia Scaffold 1179.36 0 Queen's University GCA_002289315.1 2018[146]
Urile pelagicus Scaffold 1210.66 0 UCLA GCA_002173435.1 2017[147]
Zonotrichia albicollis Scaffold 1052.6 15943 GCA_000385455.1
Zonotrichia albicollis Scaffold 1017.28 0 GCA_002850735.1
Zosterops lateralis melanops Scaffold 1036 0 Imperial College London GCA_001281735.1 2015[148]

Flatworms

[edit]
Organism name Strain Assembly level Genome size (Mb) Number of predicted genes Organization GenBank assembly identifier Publication date
Clonorchis sinensis Henan Scaffold 547.288 13634 Sun Yat-sen University GCA_000236345.1 2011[149]
Dicrocoelium dendriticum Scaffold 547.921 0 Wellcome Sanger Institute GCA_000950715.1 Submitted 2014[150]
Diphyllobothrium latum Scaffold 531.434 0 Wellcome Sanger Institute GCA_000950535.1 Submitted 2014[151]
Dugesia japonica Scaffold 854.187 0 Wellcome Sanger Institute GCA_001938525.1 Submitted 2016[152]
Echinococcus granulosus Scaffold 110.838 11319 Chinese National Human Genome Center at Shanghai GCA_000524195.1 2013[153]
Echinococcus multilocularis Scaffold 114.963 9192 GCA_000469725.3
Echinostoma caproni Egypt Scaffold 834.556 0 GCA_000950555.1
Fasciola gigantica Scaffold 1273.71 0 GCA_002867515.1
Fasciola hepatica Scaffold 1275.11 0 GCA_000947175.1
Fasciola hepatica Scaffold 1269.31 0 GCA_000824725.2
Fasciola hepatica Scaffold 1138.33 14854 GCA_002763495.1
Girardia tigrina Scaffold 1428.15 0 GCA_001938485.1
Gyrodactylus salaris Lier Scaffold 67.3807 0 GCA_000715275.1
Hydatigera taeniaeformis Scaffold 103.665 0 GCA_000951575.1
Hymenolepis diminuta Scaffold 165.879 0 Wellcome Sanger Institute GCA_000951255.1 Submitted 2014[154]
Hymenolepis microstoma Scaffold 182.137 9409 Wellcome Sanger Institute GCA_000469805.2 2013[155]
Hymenolepis nana Scaffold 162.944 0 GCA_000951275.1
Macrostomum lignano Scaffold 764.411 49025 GCA_002269645.1
Macrostomum lignano Contig 1040.12 0 GCA_001188465.1
Mesocestoides corti Scaffold 117.182 0 GCA_000951315.1
Opisthorchis viverrini Scaffold 620.453 16356 GCA_000715545.1
Opisthorchis viverrini Scaffold 472.261 10859 GCA_001990785.1
Protopolystoma xenopodis Scaffold 617.345 0 GCA_000950455.1
Schistocephalus solidus NST_G2 Scaffold 539.425 0 GCA_000951495.1
Schistosoma curassoni Dakar, Senegal Scaffold 344.202 0 GCA_000951415.1
Schistosoma haematobium Scaffold 375.894 10837 GCA_000699445.1
Schistosoma japonicum Scaffold 402.743 0 GCA_000151775.1
Schistosoma mansoni Puerto Rico Chromosome 364.538 13258 GCA_000237925.2
Schistosoma margrebowiei Zambia Scaffold 367.397 0 GCA_000951435.1
Schistosoma mattheei Denwood, Zambia Scaffold 340.818 0 GCA_000951455.1
Schistosoma rodhaini Burundi Scaffold 343.294 0 GCA_000951475.1
Schmidtea mediterranea S2 Scaffold 942.042 0 GCA_002600895.1
Schmidtea mediterranea CIW4 Scaffold 779.48 0 GCA_000572305.1
Schmidtea mediterranea s2f2 Scaffold 700.726 0 GCA_000691995.1
Schmidtea mediterranea S2F2 Contig 865.587 0 GCA_000181075.1
Spirometra erinaceieuropaei Scaffold 1258.72 0 GCA_000951995.1
Taenia asiatica Scaffold 168.679 0 GCA_001693035.2
Taenia asiatica Scaffold 135.978 0 GCA_000951535.1
Taenia multiceps Contig 240.09 0 GCA_001923025.1
Taenia saginata Scaffold 169.104 0 GCA_001693075.2
Taenia solium Scaffold 129.811 0 GCA_001870725.1
Taenia solium Contig 114.436 0 GCA_002082475.1
Taenia solium Contig 116.38 0 GCA_002221735.1
Trichobilharzia regenti Scaffold 701.762 0 GCA_000950905.1

Fishes (123)

[edit]
Organism name Strain Assembly level Genome size (Mb) Number of predicted genes Organization GenBank assembly identifier Publication date
1

References

[edit]
  1. ^ Hellsten, Uffe; Harland, Richard M.; Gilchrist, Michael J.; Hendrix, David; Jurka, Jerzy; Kapitonov, Vladimir; Ovcharenko, Ivan; Putnam, Nicholas H.; Shu, Shengqiang (2010-04-30). "The genome of the Western clawed frog Xenopus tropicalis". Science (New York, N.Y.). 328 (5978): 633–636. doi:10.1126/science.1183670. ISSN 1095-9203. PMC 2994648. PMID 20431018.{{cite journal}}: CS1 maint: PMC format (link)
  2. ^ Session, Adam M.; Uno, Yoshinobu; Kwon, Taejoon; Chapman, Jarrod A.; Toyoda, Atsushi; Takahashi, Shuji; Fukui, Akimasa; Hikosaka, Akira; Suzuki, Atsushi (10 20, 2016). "Genome evolution in the allotetraploid frog Xenopus laevis". Nature. 538 (7625): 336–343. doi:10.1038/nature19840. ISSN 1476-4687. PMC 5313049. PMID 27762356. {{cite journal}}: Check date values in: |date= (help)CS1 maint: PMC format (link)
  3. ^ Nowoshilow, Sergej; Schloissnig, Siegfried; Fei, Ji-Feng; Dahl, Andreas; Pang, Andy W. C.; Pippel, Martin; Winkler, Sylke; Hastie, Alex R.; Young, George (2018-02-01). "The axolotl genome and the evolution of key tissue formation regulators". Nature. 554 (7690): 50–55. doi:10.1038/nature25458. ISSN 1476-4687. PMID 29364872.
  4. ^ Hammond, S. Austin; Warren, René L.; Vandervalk, Benjamin P.; Kucuk, Erdi; Khan, Hamza; Gibb, Ewan A.; Pandoh, Pawan; Kirk, Heather; Zhao, Yongjun (2017-11-10). "The North American bullfrog draft genome provides insight into hormonal regulation of long noncoding RNA". Nature Communications. 8 (1): 1433. doi:10.1038/s41467-017-01316-7. ISSN 2041-1723. PMC 5681567. PMID 29127278.{{cite journal}}: CS1 maint: PMC format (link)
  5. ^ Jiang, Lichun; Ruan, Qiping; Chen, Wei (September 2016). "The complete mitochondrial genome sequence of the Xizang Plateau frog, Nanorana parkeri (Anura: Dicroglossidae)". Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis. 27 (5): 3184–3185. doi:10.3109/19401736.2015.1007327. ISSN 2470-1408. PMID 25758045.
  6. ^ St John, John A.; Braun, Edward L.; Isberg, Sally R.; Miles, Lee G.; Chong, Amanda Y.; Gongora, Jaime; Dalzell, Pauline; Moran, Christopher; Bed'hom, Bertrand (2012-01-31). "Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes". Genome Biology. 13 (1): 415. doi:10.1186/gb-2012-13-1-415. ISSN 1474-760X. PMC 3334581. PMID 22293439.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  7. ^ Rice, Edward S.; Kohno, Satomi; John, John St; Pham, Son; Howard, Jonathan; Lareau, Liana F.; O'Connell, Brendan L.; Hickey, Glenn; Armstrong, Joel (05 2017). "Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling". Genome Research. 27 (5): 686–696. doi:10.1101/gr.213595.116. ISSN 1549-5469. PMC 5411764. PMID 28137821. {{cite journal}}: Check date values in: |date= (help)CS1 maint: PMC format (link)
  8. ^ Wan, Qiu-Hong; Pan, Sheng-Kai; Hu, Li; Zhu, Ying; Xu, Peng-Wei; Xia, Jin-Quan; Chen, Hui; He, Gen-Yun; He, Jing (September 2013). "Genome analysis and signature discovery for diving and sensory properties of the endangered Chinese alligator". Cell Research. 23 (9): 1091–1105. doi:10.1038/cr.2013.104. ISSN 1748-7838. PMC 3760627. PMID 23917531.{{cite journal}}: CS1 maint: PMC format (link)
  9. ^ Alföldi, Jessica; Di Palma, Federica; Grabherr, Manfred; Williams, Christina; Kong, Lesheng; Mauceli, Evan; Russell, Pamela; Lowe, Craig B.; Glor, Richard E. (2011-08-31). "The genome of the green anole lizard and a comparative analysis with birds and mammals". Nature. 477 (7366): 587–591. doi:10.1038/nature10390. ISSN 1476-4687. PMC 3184186. PMID 21881562.{{cite journal}}: CS1 maint: PMC format (link)
  10. ^ "Apalone spinifera (ID 177958) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  11. ^ Wang, Zhuo; Pascual-Anaya, Juan; Zadissa, Amonida; Li, Wenqi; Niimura, Yoshihito; Huang, Zhiyong; Li, Chunyi; White, Simon; Xiong, Zhiqiang (June 2013). "The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan". Nature Genetics. 45 (6): 701–706. doi:10.1038/ng.2615. ISSN 1546-1718. PMC 4000948. PMID 23624526.{{cite journal}}: CS1 maint: PMC format (link)
  12. ^ Shaffer, H. Bradley; Minx, Patrick; Warren, Daniel E.; Shedlock, Andrew M.; Thomson, Robert C.; Valenzuela, Nicole; Abramyan, John; Amemiya, Chris T.; Badenhorst, Daleen (2013-03-28). "The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage". Genome Biology. 14 (3): R28. doi:10.1186/gb-2013-14-3-r28. ISSN 1474-760X. PMC 4054807. PMID 23537068.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  13. ^ St John, John A.; Braun, Edward L.; Isberg, Sally R.; Miles, Lee G.; Chong, Amanda Y.; Gongora, Jaime; Dalzell, Pauline; Moran, Christopher; Bed'hom, Bertrand (2012-01-31). "Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes". Genome Biology. 13 (1): 415. doi:10.1186/gb-2012-13-1-415. ISSN 1474-760X. PMC 3334581. PMID 22293439.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  14. ^ Green, Richard E.; Braun, Edward L.; Armstrong, Joel; Earl, Dent; Nguyen, Ngan; Hickey, Glenn; Vandewege, Michael W.; St John, John A.; Capella-Gutiérrez, Salvador (2014-12-12). "Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs". Science (New York, N.Y.). 346 (6215): 1254449. doi:10.1126/science.1254449. ISSN 1095-9203. PMC 4386873. PMID 25504731.{{cite journal}}: CS1 maint: PMC format (link)
  15. ^ "Crotalus horridus isolate:016-059-111 (ID 181087) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  16. ^ Gilbert, C.; Meik, J. M.; Dashevsky, D.; Card, D. C.; Castoe, T. A.; Schaack, S. (2014-09-22). "Endogenous hepadnaviruses, bornaviruses and circoviruses in snakes". Proceedings. Biological Sciences. 281 (1791): 20141122. doi:10.1098/rspb.2014.1122. ISSN 1471-2954. PMC 4132678. PMID 25080342.{{cite journal}}: CS1 maint: PMC format (link)
  17. ^ Liu, Yan; Zhou, Qian; Wang, Yongjun; Luo, Longhai; Yang, Jian; Yang, Linfeng; Liu, Mei; Li, Yingrui; Qian, Tianmei (2015-11-24). "Gekko japonicus genome reveals evolution of adhesive toe pads and tail regeneration". Nature Communications. 6: 10033. doi:10.1038/ncomms10033. ISSN 2041-1723. PMC 4673495. PMID 26598231.{{cite journal}}: CS1 maint: PMC format (link)
  18. ^ Tollis, Marc; DeNardo, Dale F.; Cornelius, John A.; Dolby, Greer A.; Edwards, Taylor; Henen, Brian T.; Karl, Alice E.; Murphy, Robert W.; Kusumi, Kenro (2017). "The Agassiz's desert tortoise genome provides a resource for the conservation of a threatened species". PloS One. 12 (5): e0177708. doi:10.1371/journal.pone.0177708. ISSN 1932-6203. PMC 5451010. PMID 28562605.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  19. ^ Tollis, Marc; DeNardo, Dale F.; Cornelius, John A.; Dolby, Greer A.; Edwards, Taylor; Henen, Brian T.; Karl, Alice E.; Murphy, Robert W.; Kusumi, Kenro (2017). "The Agassiz's desert tortoise genome provides a resource for the conservation of a threatened species". PloS One. 12 (5): e0177708. doi:10.1371/journal.pone.0177708. ISSN 1932-6203. PMC 5451010. PMID 28562605.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  20. ^ "Malaclemys terrapin terrapin (ID 339452) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  21. ^ Vonk, Freek J.; Casewell, Nicholas R.; Henkel, Christiaan V.; Heimberg, Alysha M.; Jansen, Hans J.; McCleary, Ryan J. R.; Kerkkamp, Harald M. E.; Vos, Rutger A.; Guerreiro, Isabel (2013-12-17). "The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system". Proceedings of the National Academy of Sciences of the United States of America. 110 (51): 20651–20656. doi:10.1073/pnas.1314702110. ISSN 1091-6490. PMC 3870661. PMID 24297900.{{cite journal}}: CS1 maint: PMC format (link)
  22. ^ Ullate-Agote, Asier; Milinkovitch, Michel C.; Tzika, Athanasia C. (2014). "The genome sequence of the corn snake (Pantherophis guttatus), a valuable resource for EvoDevo studies in squamates". The International Journal of Developmental Biology. 58 (10–12): 881–888. doi:10.1387/ijdb.150060at. ISSN 1696-3547. PMID 26154328.
  23. ^ Wang, Zhuo; Pascual-Anaya, Juan; Zadissa, Amonida; Li, Wenqi; Niimura, Yoshihito; Huang, Zhiyong; Li, Chunyi; White, Simon; Xiong, Zhiqiang (June 2013). "The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan". Nature Genetics. 45 (6): 701–706. doi:10.1038/ng.2615. ISSN 1546-1718. PMC 4000948. PMID 23624526.{{cite journal}}: CS1 maint: PMC format (link)
  24. ^ Georges, Arthur; Li, Qiye; Lian, Jinmin; O'Meally, Denis; Deakin, Janine; Wang, Zongji; Zhang, Pei; Fujita, Matthew; Patel, Hardip R. (2015). "High-coverage sequencing and annotated assembly of the genome of the Australian dragon lizard Pogona vitticeps". GigaScience. 4: 45. doi:10.1186/s13742-015-0085-2. ISSN 2047-217X. PMC 4585809. PMID 26421146.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  25. ^ Zhang, Liang; Huang, Xin; Li, Zhenyu; Hu, Huijian; Zhang, Baowei (October 2013). "Mitochondrial genome of Protobothrops mucrosquamatus (Squamata: Viperidae: Crotalinae)". Mitochondrial DNA. 24 (5): 495–497. doi:10.3109/19401736.2013.770502. ISSN 1940-1744. PMID 23442168.
  26. ^ Aird, Steven D.; Arora, Jigyasa; Barua, Agneesh; Qiu, Lijun; Terada, Kouki; Mikheyev, Alexander S. (2017-10-01). "Population Genomic Analysis of a Pitviper Reveals Microevolutionary Forces Underlying Venom Chemistry". Genome Biology and Evolution. 9 (10): 2640–2649. doi:10.1093/gbe/evx199. ISSN 1759-6653. PMC 5737360. PMID 29048530.{{cite journal}}: CS1 maint: PMC format (link)
  27. ^ Castoe, Todd A.; de Koning, Jason A. P.; Hall, Kathryn T.; Yokoyama, Ken D.; Gu, Wanjun; Smith, Eric N.; Feschotte, Cédric; Uetz, Peter; Ray, David A. (2011-07-28). "Sequencing the genome of the Burmese python (Python molurus bivittatus) as a model for studying extreme adaptations in snakes". Genome Biology. 12 (7): 406. doi:10.1186/gb-2011-12-7-406. ISSN 1474-760X. PMC 3218823. PMID 21801464.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  28. ^ "Python bivittatus (ID 61243) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  29. ^ "Terrapene mexicana triunguis (ID 415469) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  30. ^ McGlothlin, Joel W.; Chuckalovcak, John P.; Janes, Daniel E.; Edwards, Scott V.; Feldman, Chris R.; Brodie, Edmund D.; Pfrender, Michael E.; Brodie, Edmund D. (November 2014). "Parallel evolution of tetrodotoxin resistance in three voltage-gated sodium channel genes in the garter snake Thamnophis sirtalis". Molecular Biology and Evolution. 31 (11): 2836–2846. doi:10.1093/molbev/msu237. ISSN 1537-1719. PMC 4209135. PMID 25135948.{{cite journal}}: CS1 maint: PMC format (link)
  31. ^ "Vipera berus berus isolate:VBER.BE-female (ID 170536) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  32. ^ "Acanthochromis polyacanthus (ID 396896) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  33. ^ "Amphilophus citrinellus (ID 259329) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  34. ^ "Amphiprion ocellaris (ID 421964) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  35. ^ "Anguilla anguilla (ID 73577) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  36. ^ "Anguilla rostrata isolate:LakeOntario-01-2011 (ID 285069) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  37. ^ Rondeau, Eric B.; Messmer, Amber M.; Sanderson, Dan S.; Jantzen, Stuart G.; von Schalburg, Kristian R.; Minkley, David R.; Leong, Jong S.; Macdonald, Graham M.; Davidsen, Amanda E. (2013-07-06). "Genomics of sablefish (Anoplopoma fimbria): expressed genes, mitochondrial phylogeny, linkage map and identification of a putative sex gene". BMC genomics. 14: 452. doi:10.1186/1471-2164-14-452. ISSN 1471-2164. PMC 3708741. PMID 23829495.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  38. ^ McGaugh, Suzanne E.; Gross, Joshua B.; Aken, Bronwen; Blin, Maryline; Borowsky, Richard; Chalopin, Domitille; Hinaux, Hélène; Jeffery, William R.; Keene, Alex (2014-10-20). "The cavefish genome reveals candidate genes for eye loss". Nature Communications. 5: 5307. doi:10.1038/ncomms6307. ISSN 2041-1723. PMC 4218959. PMID 25329095.{{cite journal}}: CS1 maint: PMC format (link)
  39. ^ "Austrofundulus limnaeus strain:Quisiro (ID 294420) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  40. ^ You, Xinxin; Bian, Chao; Zan, Qijie; Xu, Xun; Liu, Xin; Chen, Jieming; Wang, Jintu; Qiu, Ying; Li, Wujiao (2014-12-02). "Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes". Nature Communications. 5: 5594. doi:10.1038/ncomms6594. ISSN 2041-1723. PMC 4268706. PMID 25463417.{{cite journal}}: CS1 maint: PMC format (link)
  41. ^ Venkatesh, Byrappa; Kirkness, Ewen F.; Loh, Yong-Hwee; Halpern, Aaron L.; Lee, Alison P.; Johnson, Justin; Dandona, Nidhi; Viswanathan, Lakshmi D.; Tay, Alice (April 2007). "Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome". PLoS biology. 5 (4): e101. doi:10.1371/journal.pbio.0050101. ISSN 1545-7885. PMC 1845163. PMID 17407382.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  42. ^ Venkatesh, Byrappa; Lee, Alison P.; Ravi, Vydianathan; Maurya, Ashish K.; Lian, Michelle M.; Swann, Jeremy B.; Ohta, Yuko; Flajnik, Martin F.; Sutoh, Yoichi (2014-01-09). "Elephant shark genome provides unique insights into gnathostome evolution". Nature. 505 (7482): 174–179. doi:10.1038/nature12826. ISSN 1476-4687. PMC 3964593. PMID 24402279.{{cite journal}}: CS1 maint: PMC format (link)
  43. ^ "Clupea harengus (ID 286317) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  44. ^ "Coryphaenoides rupestris isolate:MGRH-2017 (ID 417902) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  45. ^ "Cottus rhenanus (ID 297779) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  46. ^ Chen, Songlin; Zhang, Guojie; Shao, Changwei; Huang, Quanfei; Liu, Geng; Zhang, Pei; Song, Wentao; An, Na; Chalopin, Domitille (March 2014). "Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle". Nature Genetics. 46 (3): 253–260. doi:10.1038/ng.2890. ISSN 1546-1718. PMID 24487278.
  47. ^ "Cyprinodon nevadensis pectoralis (ID 254053) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  48. ^ Tine, Mbaye; Kuhl, Heiner; Gagnaire, Pierre-Alexandre; Louro, Bruno; Desmarais, Erick; Martins, Rute S. T.; Hecht, Jochen; Knaust, Florian; Belkhir, Khalid (2014-12-23). "European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation". Nature Communications. 5: 5770. doi:10.1038/ncomms6770. ISSN 2041-1723. PMC 4284805. PMID 25534655.{{cite journal}}: CS1 maint: PMC format (link)
  49. ^ "Hagfish genome (ID 412185) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  50. ^ Rondeau, Eric B.; Minkley, David R.; Leong, Jong S.; Messmer, Amber M.; Jantzen, Johanna R.; von Schalburg, Kristian R.; Lemon, Craig; Bird, Nathan H.; Koop, Ben F. (2014). "The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei". PloS One. 9 (7): e102089. doi:10.1371/journal.pone.0102089. ISSN 1932-6203. PMC 4113312. PMID 25069045.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  51. ^ "Fundulus heteroclitus (ID 286680) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  52. ^ Star, Bastiaan; Nederbragt, Alexander J.; Jentoft, Sissel; Grimholt, Unni; Malmstrøm, Martin; Gregers, Tone F.; Rounge, Trine B.; Paulsen, Jonas; Solbakken, Monica H. (2011-08-10). "The genome sequence of Atlantic cod reveals a unique immune system". Nature. 477 (7363): 207–210. doi:10.1038/nature10342. ISSN 1476-4687. PMC 3537168. PMID 21832995.{{cite journal}}: CS1 maint: PMC format (link)
  53. ^ "Gasterosteus aculeatus (ID 13579) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  54. ^ Brawand, David; Wagner, Catherine E.; Li, Yang I.; Malinsky, Milan; Keller, Irene; Fan, Shaohua; Simakov, Oleg; Ng, Alvin Y.; Lim, Zhi Wei (2014-09-18). "The genomic substrate for adaptive radiation in African cichlid fish". Nature. 513 (7518): 375–381. doi:10.1038/nature13726. ISSN 1476-4687. PMC 4353498. PMID 25186727.{{cite journal}}: CS1 maint: PMC format (link)
  55. ^ Lin, Qiang; Fan, Shaohua; Zhang, Yanhong; Xu, Meng; Zhang, Huixian; Yang, Yulan; Lee, Alison P.; Woltering, Joost M.; Ravi, Vydianathan (12-14-2016). "The seahorse genome and the evolution of its specialized morphology". Nature. 540 (7633): 395–399. doi:10.1038/nature20595. ISSN 1476-4687. PMID 27974754. {{cite journal}}: Check date values in: |date= (help)
  56. ^ Liu, Zhanjiang; Liu, Shikai; Yao, Jun; Bao, Lisui; Zhang, Jiaren; Li, Yun; Jiang, Chen; Sun, Luyang; Wang, Ruijia (2016-06-02). "The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts". Nature Communications. 7: 11757. doi:10.1038/ncomms11757. ISSN 2041-1723. PMC 4895719. PMID 27249958.{{cite journal}}: CS1 maint: PMC format (link)
  57. ^ "BallGen (ID 320367) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  58. ^ "Lepisosteus oculatus (ID 68247) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  59. ^ "Lethenteron camtschaticum (ID 237018) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  60. ^ "the genome sequencing of Leuciscus waleckii (ID 320706) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  61. ^ "Maccullochella peelii isolate:KMC200 (ID 290988) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  62. ^ Brawand, David; Wagner, Catherine E.; Li, Yang I.; Malinsky, Milan; Keller, Irene; Fan, Shaohua; Simakov, Oleg; Ng, Alvin Y.; Lim, Zhi Wei (2014-09-18). "The genomic substrate for adaptive radiation in African cichlid fish". Nature. 513 (7518): 375–381. doi:10.1038/nature13726. ISSN 1476-4687. PMC 4353498. PMID 25186727.{{cite journal}}: CS1 maint: PMC format (link)
  63. ^ Conte, Matthew A.; Kocher, Thomas D. (2015-09-22). "An improved genome reference for the African cichlid, Metriaclima zebra". BMC genomics. 16: 724. doi:10.1186/s12864-015-1930-5. ISSN 1471-2164. PMC 4580222. PMID 26394688.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  64. ^ a b c Loh, Yong-Hwee E.; Katz, Lee S.; Mims, Meryl C.; Kocher, Thomas D.; Yi, Soojin V.; Streelman, J. Todd (2008). "Comparative analysis reveals signatures of differentiation amid genomic polymorphism in Lake Malawi cichlids". Genome Biology. 9 (7): R113. doi:10.1186/gb-2008-9-7-r113. ISSN 1474-760X. PMC 2530870. PMID 18616806.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  65. ^ "Micropterus floridanus isolate:GALMBF000 (ID 398142) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  66. ^ Xu, Tianjun; Xu, Guoliang; Che, Rongbo; Wang, Rixin; Wang, Yanjin; Li, Jinrui; Wang, Shanchen; Shu, Chang; Sun, Yuena (2016-02-23). "The genome of the miiuy croaker reveals well-developed innate immune and sensory systems". Scientific Reports. 6: 21902. doi:10.1038/srep21902. ISSN 2045-2322. PMC 4763219. PMID 26902509.{{cite journal}}: CS1 maint: PMC format (link)
  67. ^ "Mola mola isolate:MOLMO (ID 305960) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  68. ^ "Morone saxatilis (ID 266827) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  69. ^ Brawand, David; Wagner, Catherine E.; Li, Yang I.; Malinsky, Milan; Keller, Irene; Fan, Shaohua; Simakov, Oleg; Ng, Alvin Y.; Lim, Zhi Wei (2014-09-18). "The genomic substrate for adaptive radiation in African cichlid fish". Nature. 513 (7518): 375–381. doi:10.1038/nature13726. ISSN 1476-4687. PMC 4353498. PMID 25186727.{{cite journal}}: CS1 maint: PMC format (link)
  70. ^ Shin, Seung Chul; Ahn, Do Hwan; Kim, Su Jin; Pyo, Chul Woo; Lee, Hyoungseok; Kim, Mi-Kyeong; Lee, Jungeun; Lee, Jong Eun; Detrich, H. William (2014-09-25). "The genome sequence of the Antarctic bullhead notothen reveals evolutionary adaptations to a cold environment". Genome Biology. 15 (9): 468. doi:10.1186/s13059-014-0468-1. ISSN 1474-760X. PMC 4192396. PMID 25252967.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  71. ^ "ID 378663 - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  72. ^ "Oryzias melastigma strain:HK-1 (ID 401159) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  73. ^ Sawayama, Eitaro; Tanizawa, Shiho; Kitamura, Shin-Ichi; Nakayama, Kei; Ohta, Kohei; Ozaki, Akiyuki; Takagi, Motohiro (December 2017). "Identification of Quantitative Trait Loci for Resistance to RSIVD in Red Sea Bream (Pagrus major)". Marine Biotechnology (New York, N.Y.). 19 (6): 601–613. doi:10.1007/s10126-017-9779-z. ISSN 1436-2236. PMID 29127523.
  74. ^ AlMomin, Sabah; Kumar, Vinod; Al-Amad, Sami; Al-Hussaini, Mohsen; Dashti, Talal; Al-Enezi, Khaznah; Akbar, Abrar (January 2016). "Draft genome sequence of the silver pomfret fish, Pampus argenteus". Genome. 59 (1): 51–58. doi:10.1139/gen-2015-0056. ISSN 1480-3321. PMID 26692342.
  75. ^ Gallant, Jason R.; Losilla, Mauricio; Tomlinson, Chad; Warren, Wesley C. (2017-12-01). "The Genome and Adult Somatic Transcriptome of the Mormyrid Electric Fish Paramormyrops kingsleyae". Genome Biology and Evolution. 9 (12): 3525–3530. doi:10.1093/gbe/evx265. ISSN 1759-6653. PMC 5751062. PMID 29240929.{{cite journal}}: CS1 maint: PMC format (link)
  76. ^ a b You, Xinxin; Bian, Chao; Zan, Qijie; Xu, Xun; Liu, Xin; Chen, Jieming; Wang, Jintu; Qiu, Ying; Li, Wujiao (2014-12-02). "Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes". Nature Communications. 5: 5594. doi:10.1038/ncomms6594. ISSN 2041-1723. PMC 4268706. PMID 25463417.{{cite journal}}: CS1 maint: PMC format (link)
  77. ^ "Poecilia formosa strain:female (ID 237006) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  78. ^ "Poecilia latipinna (ID 305623) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  79. ^ "Poecilia mexicana (ID 305619) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  80. ^ Fraser, Bonnie A.; Künstner, Axel; Reznick, David N.; Dreyer, Christine; Weigel, Detlef (January 2015). "Population genomics of natural and experimental populations of guppies (Poecilia reticulata)". Molecular Ecology. 24 (2): 389–408. doi:10.1111/mec.13022. ISSN 1365-294X. PMID 25444454.
  81. ^ Genomic Resources Development Consortium; Arthofer, Wolfgang; Bertini, Laura; Caruso, Carla; Cicconardi, Francesco; Delph, Lynda F.; Fields, Peter D.; Ikeda, Minoru; Minegishi, Yuki (July 2015). "Genomic Resources Notes accepted 1 February 2015 - 31 March 2015". Molecular Ecology Resources. 15 (4): 1014–1015. doi:10.1111/1755-0998.12419. ISSN 1755-0998. PMID 26095006.
  82. ^ Brawand, David; Wagner, Catherine E.; Li, Yang I.; Malinsky, Milan; Keller, Irene; Fan, Shaohua; Simakov, Oleg; Ng, Alvin Y.; Lim, Zhi Wei (2014-09-18). "The genomic substrate for adaptive radiation in African cichlid fish". Nature. 513 (7518): 375–381. doi:10.1038/nature13726. ISSN 1476-4687. PMC 4353498. PMID 25186727.{{cite journal}}: CS1 maint: PMC format (link)
  83. ^ "Pygocentrus nattereri isolate:Pna-1 (ID 331139) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  84. ^ "Salvelinus alpinus isolate:IW2-2015 (ID 433373) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  85. ^ You, Xinxin; Bian, Chao; Zan, Qijie; Xu, Xun; Liu, Xin; Chen, Jieming; Wang, Jintu; Qiu, Ying; Li, Wujiao (2014-12-02). "Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes". Nature Communications. 5: 5594. doi:10.1038/ncomms6594. ISSN 2041-1723. PMC 4268706. PMID 25463417.{{cite journal}}: CS1 maint: PMC format (link)
  86. ^ "Sebastes aleutianus isolate:Aleu4 (ID 229179) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  87. ^ "Sebastes minor isolate:S-Minor-200 (ID 236304) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  88. ^ "Sebastes nigrocinctus (ID 171384) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  89. ^ "Sebastes rubrivinctus (ID 62009) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  90. ^ "Sebastes steindachneri isolate:S-Stein-200 (ID 236323) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  91. ^ "Seriola dumerili (ID 397287) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  92. ^ "Seriola lalandi dorsalis (ID 423295) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  93. ^ a b c Yang, Junxing; Chen, Xiaoli; Bai, Jie; Fang, Dongming; Qiu, Ying; Jiang, Wansheng; Yuan, Hui; Bian, Chao; Lu, Jiang (2016-01-04). "The Sinocyclocheilus cavefish genome provides insights into cave adaptation". BMC biology. 14: 1. doi:10.1186/s12915-015-0223-4. ISSN 1741-7007. PMC 4698820. PMID 26728391.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  94. ^ "Stegastes partitus isolate:25-593 (ID 251741) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  95. ^ "ID 354496 - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  96. ^ Gao, Yang; Gao, Qiang; Zhang, Huan; Wang, Lingling; Zhang, Fuchong; Yang, Chuanyan; Song, Linsheng (December 2014). "Draft sequencing and analysis of the genome of pufferfish Takifugu flavidus". DNA research: an international journal for rapid publication of reports on genes and genomes. 21 (6): 627–637. doi:10.1093/dnares/dsu025. ISSN 1756-1663. PMC 4263296. PMID 25053628.{{cite journal}}: CS1 maint: PMC format (link)
  97. ^ Aparicio, Samuel; Chapman, Jarrod; Stupka, Elia; Putnam, Nik; Chia, Jer-Ming; Dehal, Paramvir; Christoffels, Alan; Rash, Sam; Hoon, Shawn (2002-08-23). "Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes". Science (New York, N.Y.). 297 (5585): 1301–1310. doi:10.1126/science.1072104. ISSN 1095-9203. PMID 12142439.
  98. ^ Kai, Wataru; Kikuchi, Kiyoshi; Tohari, Sumanty; Chew, Ah Keng; Tay, Alice; Fujiwara, Atushi; Hosoya, Sho; Suetake, Hiroaki; Naruse, Kiyoshi (2011). "Integration of the genetic map and genome assembly of fugu facilitates insights into distinct features of genome evolution in teleosts and mammals". Genome Biology and Evolution. 3: 424–442. doi:10.1093/gbe/evr041. ISSN 1759-6653. PMC 5654407. PMID 21551351.{{cite journal}}: CS1 maint: PMC format (link)
  99. ^ Jaillon, Olivier; Aury, Jean-Marc; Brunet, Frédéric; Petit, Jean-Louis; Stange-Thomann, Nicole; Mauceli, Evan; Bouneau, Laurence; Fischer, Cécile; Ozouf-Costaz, Catherine (2004-10-21). "Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype". Nature. 431 (7011): 946–957. doi:10.1038/nature03025. ISSN 1476-4687. PMID 15496914.
  100. ^ Nakamura, Yoji; Mori, Kazuki; Saitoh, Kenji; Oshima, Kenshiro; Mekuchi, Miyuki; Sugaya, Takuma; Shigenobu, Yuya; Ojima, Nobuhiko; Muta, Shigeru (2013-07-02). "Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna". Proceedings of the National Academy of Sciences of the United States of America. 110 (27): 11061–11066. doi:10.1073/pnas.1302051110. ISSN 1091-6490. PMC 3703999. PMID 23781100.{{cite journal}}: CS1 maint: PMC format (link)
  101. ^ a b Shen, Yingjia; Chalopin, Domitille; Garcia, Tzintzuni; Boswell, Mikki; Boswell, William; Shiryev, Sergey A.; Agarwala, Richa; Volff, Jean-Nicolas; Postlethwait, John H. (2016-01-07). "X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species". BMC genomics. 17: 37. doi:10.1186/s12864-015-2361-z. ISSN 1471-2164. PMC 4705583. PMID 26742787.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  102. ^ a b c d e f g h i j k l m n o p q r s t u v w x y z aa ab ac ad ae af ag ah ai aj Zhang, Guojie; Li, Cai; Li, Qiye; Li, Bo; Larkin, Denis M.; Lee, Chul; Storz, Jay F.; Antunes, Agostinho; Greenwold, Matthew J. (2014-12-12). "Comparative genomics reveals insights into avian genome evolution and adaptation". Science (New York, N.Y.). 346 (6215): 1311–1320. doi:10.1126/science.1251385. ISSN 1095-9203. PMC 4390078. PMID 25504712.{{cite journal}}: CS1 maint: PMC format (link)
  103. ^ Low, G. W.; Chattopadhyay, B.; Garg, K. M.; Irestedt, M.; Ericson, Pgp; Yap, G.; Tang, Q.; Wu, S.; Rheindt, F. E. (January 2018). "Urban landscape genomics identifies fine-scale gene flow patterns in an avian invasive". Heredity. 120 (2): 138–153. doi:10.1038/s41437-017-0026-1. ISSN 1365-2540. PMID 29225353.
  104. ^ van der Zwan, Henriëtte; van der Westhuizen, Francois; Visser, Carina; van der Sluis, Rencia (2017-10-16). "Draft De Novo Genome Sequence of Agapornis roseicollis for Application in Avian Breeding". Animal Biotechnology: 1–6. doi:10.1080/10495398.2017.1367692. ISSN 1532-2378. PMID 29035135.
  105. ^ "Amazona aestiva isolate:FVVF132 (ID 294082) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  106. ^ Oleksyk, Taras K.; Pombert, Jean-Francois; Siu, Daniel; Mazo-Vargas, Anyimilehidi; Ramos, Brian; Guiblet, Wilfried; Afanador, Yashira; Ruiz-Rodriguez, Christina T.; Nickerson, Michael L. (2012-09-28). "A locally funded Puerto Rican parrot (Amazona vittata) genome sequencing project increases avian data and advances young researcher education". GigaScience. 1 (1): 14. doi:10.1186/2047-217X-1-14. ISSN 2047-217X. PMC 3626513. PMID 23587420.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  107. ^ "Anas platyrhynchos platyrhynchos breed:Pekin duck (ID 403935) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  108. ^ "Anas (ID 392350) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  109. ^ Pujolar, J. M.; Dalén, L.; Olsen, R. A.; Hansen, M. M.; Madsen, J. (03 2018). "First de novo whole genome sequencing and assembly of the pink-footed goose". Genomics. 110 (2): 75–79. doi:10.1016/j.ygeno.2017.08.008. ISSN 1089-8646. PMID 28860085. {{cite journal}}: Check date values in: |date= (help)
  110. ^ Gao, Guangliang; Zhao, Xianzhi; Li, Qin; He, Chuan; Zhao, Wenjing; Liu, Shuyun; Ding, Jinmei; Ye, Weixing; Wang, Jun (2016-09-09). "Genome and metagenome analyses reveal adaptive evolution of the host and interaction with the gut microbiota in the goose". Scientific Reports. 6: 32961. doi:10.1038/srep32961. ISSN 2045-2322. PMC 5016989. PMID 27608918.{{cite journal}}: CS1 maint: PMC format (link)
  111. ^ Lu, Lizhi; Chen, Yan; Wang, Zhuo; Li, Xiaofeng; Chen, Weihu; Tao, Zhengrong; Shen, Junda; Tian, Yong; Wang, Deqian (2015-05-06). "The goose genome sequence leads to insights into the evolution of waterfowl and susceptibility to fatty liver". Genome Biology. 16: 89. doi:10.1186/s13059-015-0652-y. ISSN 1474-760X. PMC 4419397. PMID 25943208.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  112. ^ Le Duc, Diana; Renaud, Gabriel; Krishnan, Arunkumar; Almén, Markus Sällman; Huynen, Leon; Prohaska, Sonja J.; Ongyerth, Matthias; Bitarello, Bárbara D.; Schiöth, Helgi B. (2015-07-23). "Kiwi genome provides insights into evolution of a nocturnal lifestyle". Genome Biology. 16: 147. doi:10.1186/s13059-015-0711-4. ISSN 1474-760X. PMC 4511969. PMID 26201466.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  113. ^ "Bambusicola thoracicus isolate:RTK389 (ID 396570) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-25.
  114. ^ Oldeschulte, David L.; Halley, Yvette A.; Wilson, Miranda L.; Bhattarai, Eric K.; Brashear, Wesley; Hill, Joshua; Metz, Richard P.; Johnson, Charles D.; Rollins, Dale (2017-09-07). "Annotated Draft Genome Assemblies for the Northern Bobwhite (Colinus virginianus) and the Scaled Quail (Callipepla squamata) Reveal Disparate Estimates of Modern Genome Diversity and Historic Effective Population Size". G3 (Bethesda, Md.). 7 (9): 3047–3058. doi:10.1534/g3.117.043083. ISSN 2160-1836. PMC 5592930. PMID 28717047.{{cite journal}}: CS1 maint: PMC format (link)
  115. ^ "Ciconia boyciana (ID 327649) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-25.
  116. ^ a b Li, Shengbin; Li, Bo; Cheng, Cheng; Xiong, Zijun; Liu, Qingbo; Lai, Jianghua; Carey, Hannah V.; Zhang, Qiong; Zheng, Haibo (2014). "Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species". Genome Biology. 15 (12): 557. doi:10.1186/s13059-014-0557-1. ISSN 1474-760X. PMC 4290368. PMID 25496777.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  117. ^ a b Zhang, Guojie; Li, Cai; Li, Qiye; Li, Bo; Larkin, Denis M.; Lee, Chul; Storz, Jay F.; Antunes, Agostinho; Greenwold, Matthew J. (2014-12-12). "Comparative genomics reveals insights into avian genome evolution and adaptation". Science (New York, N.Y.). 346 (6215): 1311–1320. doi:10.1126/science.1251385. ISSN 1095-9203. PMC 4390078. PMID 25504712.{{cite journal}}: CS1 maint: PMC format (link)
  118. ^ Zhan, Xiangjiang; Pan, Shengkai; Wang, Junyi; Dixon, Andrew; He, Jing; Muller, Margit G.; Ni, Peixiang; Hu, Li; Liu, Yuan (May 2013). "Peregrine and saker falcon genome sequences provide insights into evolution of a predatory lifestyle". Nature Genetics. 45 (5): 563–566. doi:10.1038/ng.2588. ISSN 1546-1718. PMID 23525076.
  119. ^ Ellegren, Hans; Smeds, Linnéa; Burri, Reto; Olason, Pall I.; Backström, Niclas; Kawakami, Takeshi; Künstner, Axel; Mäkinen, Hannu; Nadachowska-Brzyska, Krystyna (2012-11-29). "The genomic landscape of species divergence in Ficedula flycatchers". Nature. 491 (7426): 756–760. doi:10.1038/nature11584. ISSN 1476-4687. PMID 23103876.
  120. ^ "Gallirallus okinawae (ID 327647) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-25.
  121. ^ "Grus japonensis (ID 327648) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-25.
  122. ^ "Haliaeetus leucocephalus (ID 269279) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-25.
  123. ^ "Lepidothrix coronata (ID 338288) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-25.
  124. ^ "Limosa lapponica baueri isolate:BTGAFAM01 (ID 321163) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-25.
  125. ^ Yang, Fan; Zhao, Guanghong; Zhou, Lizhi; Li, Bo (July 2016). "Complete mitochondrial genome of White-rumped Munia Lonchura striata swinhoei (Passeriformes: Estrildidae)". Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis. 27 (4): 3028–3029. doi:10.3109/19401736.2015.1063052. ISSN 2470-1408. PMID 26190080.
  126. ^ "Lyrurus tetrix tetrix (ID 179551) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-25.
  127. ^ Dalloul, Rami A.; Long, Julie A.; Zimin, Aleksey V.; Aslam, Luqman; Beal, Kathryn; Blomberg, Le Ann; Bouffard, Pascal; Burt, David W.; Crasta, Oswald (2010-09-07). "Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis". PLoS biology. 8 (9). doi:10.1371/journal.pbio.1000475. ISSN 1545-7885. PMC 2935454. PMID 20838655.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  128. ^ "Melopsittacus undulatus (ID 197262) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-25.
  129. ^ a b c Burga, Alejandro; Wang, Weiguang; Ben-David, Eyal; Wolf, Paul C.; Ramey, Andrew M.; Verdugo, Claudio; Lyons, Karen; Parker, Patricia G.; Kruglyak, Leonid (06 02, 2017). "A genetic signature of the evolution of loss of flight in the Galapagos cormorant". Science (New York, N.Y.). 356 (6341). doi:10.1126/science.aal3345. ISSN 1095-9203. PMC 5567675. PMID 28572335. {{cite journal}}: Check date values in: |date= (help)CS1 maint: PMC format (link)
  130. ^ "Numida meleagris isolate:19003 | breed:g44 Domesti... (ID 352321) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-25.
  131. ^ Laine, Veronika N.; Gossmann, Toni I.; Schachtschneider, Kyle M.; Garroway, Colin J.; Madsen, Ole; Verhoeven, Koen J. F.; de Jager, Victor; Megens, Hendrik-Jan; Warren, Wesley C. (2016-01-25). "Evolutionary signals of selection on cognition from the great tit genome and methylome". Nature Communications. 7: 10474. doi:10.1038/ncomms10474. ISSN 2041-1723. PMC 4737754. PMID 26805030.{{cite journal}}: CS1 maint: PMC format (link)
  132. ^ "Passer domesticus isolate:8887266 (ID 255814) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-25.
  133. ^ "Patagioenas fasciata isolate:BTP2013 (ID 308039) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-25.
  134. ^ a b Irwin, Darren E.; Alcaide, Miguel; Delmore, Kira E.; Irwin, Jessica H.; Owens, Gregory L. (September 2016). "Recurrent selection explains parallel evolution of genomic regions of high relative but low absolute differentiation in a ring species". Molecular Ecology. 25 (18): 4488–4507. doi:10.1111/mec.13792. ISSN 1365-294X. PMID 27484941.
  135. ^ Alcaide, Miguel; Scordato, Elizabeth S. C.; Price, Trevor D.; Irwin, Darren E. (2014-07-03). "Genomic divergence in a ring species complex". Nature. 511 (7507): 83–85. doi:10.1038/nature13285. ISSN 1476-4687. PMID 24870239.
  136. ^ "Phylloscopus trochilus (ID 319295) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-25.
  137. ^ Cai, Qingle; Qian, Xiaoju; Lang, Yongshan; Luo, Yadan; Xu, Jiaohui; Pan, Shengkai; Hui, Yuanyuan; Gou, Caiyun; Cai, Yue (2013-03-28). "Genome sequence of ground tit Pseudopodoces humilis and its adaptation to high altitude". Genome Biology. 14 (3): R29. doi:10.1186/gb-2013-14-3-r29. ISSN 1474-760X. PMC 4053790. PMID 23537097.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  138. ^ "Psittacula krameri isolate:jrs2016 (ID 377329) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-25.
  139. ^ "Saxicola maurus genome (ID 377954) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  140. ^ "Serinus canaria (ID 233592) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  141. ^ Toews, David P. L.; Taylor, Scott A.; Vallender, Rachel; Brelsford, Alan; Butcher, Bronwyn G.; Messer, Philipp W.; Lovette, Irby J. (2016-09-12). "Plumage Genes and Little Else Distinguish the Genomes of Hybridizing Warblers". Current biology: CB. 26 (17): 2313–2318. doi:10.1016/j.cub.2016.06.034. ISSN 1879-0445. PMID 27546575.
  142. ^ Campagna, Leonardo; Repenning, Márcio; Silveira, Luís Fábio; Fontana, Carla Suertegaray; Tubaro, Pablo L.; Lovette, Irby J. (May 2017). "Repeated divergent selection on pigmentation genes in a rapid finch radiation". Science Advances. 3 (5): e1602404. doi:10.1126/sciadv.1602404. ISSN 2375-2548. PMC 5443641. PMID 28560331.{{cite journal}}: CS1 maint: PMC format (link)
  143. ^ Hanna, Zachary R.; Henderson, James B.; Wall, Jeffrey D.; Emerling, Christopher A.; Fuchs, Jérôme; Runckel, Charles; Mindell, David P.; Bowie, Rauri C. K.; DeRisi, Joseph L. (2017-10-01). "Northern Spotted Owl (Strix occidentalis caurina) Genome: Divergence with the Barred Owl (Strix varia) and Characterization of Light-Associated Genes". Genome Biology and Evolution. 9 (10): 2522–2545. doi:10.1093/gbe/evx158. ISSN 1759-6653. PMC 5629816. PMID 28992302.{{cite journal}}: CS1 maint: PMC format (link)
  144. ^ "Sturnus vulgaris (ID 304638) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  145. ^ "Tympanuchus cupido pinnatus isolate:GPC 3440 (ID 330991) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-21.
  146. ^ Tigano, Anna; Sackton, Timothy B.; Friesen, Vicki L. (January 2018). "Assembly and RNA-free annotation of highly heterozygous genomes: The case of the thick-billed murre (Uria lomvia)". Molecular Ecology Resources. 18 (1): 79–90. doi:10.1111/1755-0998.12712. ISSN 1755-0998. PMID 28815912.
  147. ^ Burga, Alejandro; Wang, Weiguang; Ben-David, Eyal; Wolf, Paul C.; Ramey, Andrew M.; Verdugo, Claudio; Lyons, Karen; Parker, Patricia G.; Kruglyak, Leonid (06 02, 2017). "A genetic signature of the evolution of loss of flight in the Galapagos cormorant". Science (New York, N.Y.). 356 (6341). doi:10.1126/science.aal3345. ISSN 1095-9203. PMC 5567675. PMID 28572335. {{cite journal}}: Check date values in: |date= (help)CS1 maint: PMC format (link)
  148. ^ Cornetti, Luca; Valente, Luis M.; Dunning, Luke T.; Quan, Xueping; Black, Richard A.; Hébert, Olivier; Savolainen, Vincent (2015-09-02). "The Genome of the "Great Speciator" Provides Insights into Bird Diversification". Genome Biology and Evolution. 7 (9): 2680–2691. doi:10.1093/gbe/evv168. ISSN 1759-6653. PMC 4607525. PMID 26338191.{{cite journal}}: CS1 maint: PMC format (link)
  149. ^ Wang, Xiaoyun; Chen, Wenjun; Huang, Yan; Sun, Jiufeng; Men, Jingtao; Liu, Hailiang; Luo, Fang; Guo, Lei; Lv, Xiaoli (2011-10-24). "The draft genome of the carcinogenic human liver fluke Clonorchis sinensis". Genome Biology. 12 (10): R107. doi:10.1186/gb-2011-12-10-r107. ISSN 1474-760X. PMC 3333777. PMID 22023798.{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
  150. ^ "Dicrocoelium dendriticum (ID 261619) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-25.
  151. ^ "Diphyllobothrium latum (ID 261616) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-25.
  152. ^ "ID 338117 - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-25.
  153. ^ Zheng, Huajun; Zhang, Wenbao; Zhang, Liang; Zhang, Zhuangzhi; Li, Jun; Lu, Gang; Zhu, Yongqiang; Wang, Yuezhu; Huang, Yin (October 2013). "The genome of the hydatid tapeworm Echinococcus granulosus". Nature Genetics. 45 (10): 1168–1175. doi:10.1038/ng.2757. ISSN 1546-1718. PMID 24013640.
  154. ^ "Hymenolepis diminuta (ID 261581) - BioProject - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-02-25.
  155. ^ Tsai, Isheng J.; Zarowiecki, Magdalena; Holroyd, Nancy; Garciarrubio, Alejandro; Sánchez-Flores, Alejandro; Brooks, Karen L.; Tracey, Alan; Bobes, Raúl J.; Fragoso, Gladis (2013-04-04). "The genomes of four tapeworm species reveal adaptations to parasitism". Nature. 496 (7443): 57–63. doi:10.1038/nature12031. ISSN 1476-4687. PMC 3964345. PMID 23485966.{{cite journal}}: CS1 maint: PMC format (link)
Retrieved from "https://en.wikipedia.org/w/index.php?title=User:DKEdwards005/sandbox_genome&oldid=827493288"