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List of sequenced animal genomes: Difference between revisions

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*''[[Mnemiopsis leidyi]]'' ([[Ctenophora]]), (order [[Lobata]]) (2012<ref name="MleiGenomeWeb">{{cite web |url=http://research.nhgri.nih.gov/mnemiopsis/ |title=NHGRI Mnemiopsis Genome Project |access-date=2013-02-05 |author=National Human Genome Research Institute |year=2012}}</ref>/2013<ref>{{cite journal | vauthors = Ryan JF, Pang K, Schnitzler CE, Nguyen AD, Moreland RT, Simmons DK, Koch BJ, Francis WR, Havlak P, Smith SA, Putnam NH, Haddock SH, Dunn CW, Wolfsberg TG, Mullikin JC, Martindale MQ, Baxevanis AD | display-authors = 6 | title = The genome of the ctenophore Mnemiopsis leidyi and its implications for cell type evolution | journal = Science | volume = 342 | issue = 6164 | pages = 1242592 | date = December 2013 | pmid = 24337300 | pmc = 3920664 | doi = 10.1126/science.1242592 }}</ref>)
*''[[Mnemiopsis leidyi]]'' ([[Ctenophora]]), (order [[Lobata]]) (2012<ref name="MleiGenomeWeb">{{cite web |url=http://research.nhgri.nih.gov/mnemiopsis/ |title=NHGRI Mnemiopsis Genome Project |access-date=2013-02-05 |author=National Human Genome Research Institute |year=2012}}</ref>/2013<ref>{{cite journal | vauthors = Ryan JF, Pang K, Schnitzler CE, Nguyen AD, Moreland RT, Simmons DK, Koch BJ, Francis WR, Havlak P, Smith SA, Putnam NH, Haddock SH, Dunn CW, Wolfsberg TG, Mullikin JC, Martindale MQ, Baxevanis AD | display-authors = 6 | title = The genome of the ctenophore Mnemiopsis leidyi and its implications for cell type evolution | journal = Science | volume = 342 | issue = 6164 | pages = 1242592 | date = December 2013 | pmid = 24337300 | pmc = 3920664 | doi = 10.1126/science.1242592 }}</ref>)
*''[[Pleurobrachia bachei]]'' ([[Ctenophora]]) (2014<ref>{{cite journal | vauthors = Moroz LL, Kocot KM, Citarella MR, Dosung S, Norekian TP, Povolotskaya IS, Grigorenko AP, Dailey C, Berezikov E, Buckley KM, Ptitsyn A, Reshetov D, Mukherjee K, Moroz TP, Bobkova Y, Yu F, Kapitonov VV, Jurka J, Bobkov YV, Swore JJ, Girardo DO, Fodor A, Gusev F, Sanford R, Bruders R, Kittler E, Mills CE, Rast JP, Derelle R, Solovyev VV, Kondrashov FA, Swalla BJ, Sweedler JV, Rogaev EI, Halanych KM, Kohn AB | title = The ctenophore genome and the evolutionary origins of neural systems | journal = Nature | volume = 510 | issue = 7503 | pages = 109–14 | date = June 2014 | pmid = 24847885 | pmc = 4337882 | doi = 10.1038/nature13400 }}</ref>)
*''[[Pleurobrachia bachei]]'' ([[Ctenophora]]) (2014<ref>{{cite journal | vauthors = Moroz LL, Kocot KM, Citarella MR, Dosung S, Norekian TP, Povolotskaya IS, Grigorenko AP, Dailey C, Berezikov E, Buckley KM, Ptitsyn A, Reshetov D, Mukherjee K, Moroz TP, Bobkova Y, Yu F, Kapitonov VV, Jurka J, Bobkov YV, Swore JJ, Girardo DO, Fodor A, Gusev F, Sanford R, Bruders R, Kittler E, Mills CE, Rast JP, Derelle R, Solovyev VV, Kondrashov FA, Swalla BJ, Sweedler JV, Rogaev EI, Halanych KM, Kohn AB | display-authors = 6 | title = The ctenophore genome and the evolutionary origins of neural systems | journal = Nature | volume = 510 | issue = 7503 | pages = 109–14 | date = June 2014 | pmid = 24847885 | pmc = 4337882 | doi = 10.1038/nature13400 }}</ref>)


==Placozoa==
==Placozoa==
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** Infraclass [[Metatheria]] (marsupials)
** Infraclass [[Metatheria]] (marsupials)
*** Order [[Didelphimorphia]], Family [[Didelphidae]] (opossums)
*** Order [[Didelphimorphia]], Family [[Didelphidae]] (opossums)
**** ''[[Monodelphis domestica]]'', gray short-tailed [[opossum]] (2007<ref>{{cite journal | vauthors = Mikkelsen TS, Wakefield MJ, Aken B, Amemiya CT, Chang JL, Duke S, Garber M, Gentles AJ, Goodstadt L, Heger A, Jurka J, Kamal M, Mauceli E, Searle SM, Sharpe T, Baker ML, Batzer MA, Benos PV, Belov K, Clamp M, Cook A, Cuff J, Das R, Davidow L, Deakin JE, Fazzari MJ, Glass JL, Grabherr M, Greally JM, Gu W, Hore TA, Huttley GA, Kleber M, Jirtle RL, Koina E, Lee JT, Mahony S, Marra MA, Miller RD, Nicholls RD, Oda M, Papenfuss AT, Parra ZE, Pollock DD, Ray DA, Schein JE, Speed TP, Thompson K, VandeBerg JL, Wade CM, Walker JA, Waters PD, Webber C, Weidman JR, Xie X, Zody MC, Graves JA, Ponting CP, Breen M, Samollow PB, Lander ES, Lindblad-Toh K | display-authors = 6 | title = Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences | journal = Nature | volume = 447 | issue = 7141 | pages = 167–77 | date = May 2007 | pmid = 17495919 | doi = 10.1038/nature05805 | url = http://www.nature.com/nature/journal/v447/n7141/full/nature05805.html | bibcode = 2007Natur.447..167M }}</ref>)
**** ''[[Monodelphis domestica]]'', gray short-tailed [[opossum]] (2007<ref>{{cite journal | vauthors = Mikkelsen TS, Wakefield MJ, Aken B, Amemiya CT, Chang JL, Duke S, Garber M, Gentles AJ, Goodstadt L, Heger A, Jurka J, Kamal M, Mauceli E, Searle SM, Sharpe T, Baker ML, Batzer MA, Benos PV, Belov K, Clamp M, Cook A, Cuff J, Das R, Davidow L, Deakin JE, Fazzari MJ, Glass JL, Grabherr M, Greally JM, Gu W, Hore TA, Huttley GA, Kleber M, Jirtle RL, Koina E, Lee JT, Mahony S, Marra MA, Miller RD, Nicholls RD, Oda M, Papenfuss AT, Parra ZE, Pollock DD, Ray DA, Schein JE, Speed TP, Thompson K, VandeBerg JL, Wade CM, Walker JA, Waters PD, Webber C, Weidman JR, Xie X, Zody MC, Graves JA, Ponting CP, Breen M, Samollow PB, Lander ES, Lindblad-Toh K | display-authors = 6 | title = Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences | journal = Nature | volume = 447 | issue = 7141 | pages = 167–77 | date = May 2007 | pmid = 17495919 | doi = 10.1038/nature05805 | bibcode = 2007Natur.447..167M }}</ref>)
*** Order [[Dasyuromorphia]]
*** Order [[Dasyuromorphia]]
**** Family [[Dasyuridae]]
**** Family [[Dasyuridae]]
***** ''[[Sarcophilus harrisii]]'', [[Tasmanian devil]] (<ref>[http://www.ensembl.org/Sarcophilus_harrisii/Info/Index Ensembl entry]</ref>)
***** ''[[Sarcophilus harrisii]]'', [[Tasmanian devil]] (<ref>[http://www.ensembl.org/Sarcophilus_harrisii/Info/Index Ensembl entry]</ref>)
**** Family [[Thylacinidae]]
**** Family [[Thylacinidae]]
***** ''[[Thylacinus cynocephalus]]'', [[Thylacine]] (<ref name="pmid29230027">{{cite journal | vauthors = Feigin CY, Newton AH, Doronina L, Schmitz J, Hipsley CA, Mitchell KJ, Gower G, Llamas B, Soubrier J, Heider TN, Menzies BR, Cooper A, O'Neill RJ, Pask AJ | display-authors = 6 | title = Genome of the Tasmanian tiger provides insights into the evolution and demography of an extinct marsupial carnivore | journal = Nature Ecology & Evolution | volume = 2 | issue = 1 | pages = 182–192 | date = January 2018 | pmid = 29230027 | doi = 10.1038/s41559-017-0417-y }}</ref>)
***** ''[[Thylacinus cynocephalus]]'', [[Thylacine]] (<ref>[https://www.nature.com/articles/s41559-017-0417-y]</ref>)
*** Order [[Diprotodontia]]
*** Order [[Diprotodontia]]
**** Family [[Macropodidae]]
**** Family [[Macropodidae]]
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***** ''[[Orcinus orca]]'', [[killer whale]] (2015<ref name="foote et al" />)
***** ''[[Orcinus orca]]'', [[killer whale]] (2015<ref name="foote et al" />)
**** Family [[Monodontidae]]
**** Family [[Monodontidae]]
***** ''[[Delphinapterus]]'', [[beluga whale]] (2017<ref>http://vancouversun.com/news/local-news/beluga-whale-genome-sequenced-for-the-first-time-in-vancouver</ref>)
***** ''[[Delphinapterus]]'', [[beluga whale]] (2017<ref>{{cite web | first = Stepanie | last = Ip | name-list-format = vanc | title = Beluga whale genome sequenced for the first time in Vancouver | url = http://vancouversun.com/news/local-news/beluga-whale-genome-sequenced-for-the-first-time-in-vancouver | work = Vancouver Sun | date = 12 December 2017 }}</ref>)
*** Order [[Proboscidea]], Family [[Elephantidae]]
*** Order [[Proboscidea]], Family [[Elephantidae]]
**** ''[[Elephas maximus]]'', [[Asian elephant]] (2015<ref>{{cite journal | vauthors = Dastjerdi A, Robert C, Watson M | title = Low coverage sequencing of two Asian elephant (Elephas maximus) genomes | journal = GigaScience | volume = 3 | pages = 12 | year = 2014 | pmid = 25053995 | pmc = 4106201 | doi = 10.1186/2047-217X-3-12 }}</ref>)
**** ''[[Elephas maximus]]'', [[Asian elephant]] (2015<ref>{{cite journal | vauthors = Dastjerdi A, Robert C, Watson M | title = Low coverage sequencing of two Asian elephant (Elephas maximus) genomes | journal = GigaScience | volume = 3 | pages = 12 | year = 2014 | pmid = 25053995 | pmc = 4106201 | doi = 10.1186/2047-217X-3-12 }}</ref>)
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**''[[Clogmia albipunctata]]'', [[moth midge]] (transcriptome 2013<ref name="Jimenez-Guri2013">{{cite journal | vauthors = Jiménez-Guri E, Huerta-Cepas J, Cozzuto L, Wotton KR, Kang H, Himmelbauer H, Roma G, Gabaldón T, Jaeger J | display-authors = 6 | title = Comparative transcriptomics of early dipteran development | journal = BMC Genomics | volume = 14 | pages = 123 | date = February 2013 | pmid = 23432914 | pmc = 3616871 | doi = 10.1186/1471-2164-14-123 }}</ref>)
**''[[Clogmia albipunctata]]'', [[moth midge]] (transcriptome 2013<ref name="Jimenez-Guri2013">{{cite journal | vauthors = Jiménez-Guri E, Huerta-Cepas J, Cozzuto L, Wotton KR, Kang H, Himmelbauer H, Roma G, Gabaldón T, Jaeger J | display-authors = 6 | title = Comparative transcriptomics of early dipteran development | journal = BMC Genomics | volume = 14 | pages = 123 | date = February 2013 | pmid = 23432914 | pmc = 3616871 | doi = 10.1186/1471-2164-14-123 }}</ref>)
**''[[Culex quinquefasciatus]]'', [[mosquito]] ([[Vector (epidemiology)|vector]] of [[West Nile virus]], [[filariasis]] etc.) (2010<ref>{{cite journal | vauthors = Arensburger P, Megy K, Waterhouse RM, Abrudan J, Amedeo P, Antelo B, Bartholomay L, Bidwell S, Caler E, Camara F, Campbell CL, Campbell KS, Casola C, Castro MT, Chandramouliswaran I, Chapman SB, Christley S, Costas J, Eisenstadt E, Feschotte C, Fraser-Liggett C, Guigo R, Haas B, Hammond M, Hansson BS, Hemingway J, Hill SR, Howarth C, Ignell R, Kennedy RC, Kodira CD, Lobo NF, Mao C, Mayhew G, Michel K, Mori A, Liu N, Naveira H, Nene V, Nguyen N, Pearson MD, Pritham EJ, Puiu D, Qi Y, Ranson H, Ribeiro JM, Roberston HM, Severson DW, Shumway M, Stanke M, Strausberg RL, Sun C, Sutton G, Tu ZJ, Tubio JM, Unger MF, Vanlandingham DL, Vilella AJ, White O, White JR, Wondji CS, Wortman J, Zdobnov EM, Birren B, Christensen BM, Collins FH, Cornel A, Dimopoulos G, Hannick LI, Higgs S, Lanzaro GC, Lawson D, Lee NH, Muskavitch MA, Raikhel AS, Atkinson PW | display-authors = 6 | title = Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics | journal = Science | volume = 330 | issue = 6000 | pages = 86–8 | date = October 2010 | pmid = 20929810 | pmc = 3740384 | doi = 10.1126/science.1191864 | bibcode = 2010Sci...330...86A }}</ref>)
**''[[Culex quinquefasciatus]]'', [[mosquito]] ([[Vector (epidemiology)|vector]] of [[West Nile virus]], [[filariasis]] etc.) (2010<ref>{{cite journal | vauthors = Arensburger P, Megy K, Waterhouse RM, Abrudan J, Amedeo P, Antelo B, Bartholomay L, Bidwell S, Caler E, Camara F, Campbell CL, Campbell KS, Casola C, Castro MT, Chandramouliswaran I, Chapman SB, Christley S, Costas J, Eisenstadt E, Feschotte C, Fraser-Liggett C, Guigo R, Haas B, Hammond M, Hansson BS, Hemingway J, Hill SR, Howarth C, Ignell R, Kennedy RC, Kodira CD, Lobo NF, Mao C, Mayhew G, Michel K, Mori A, Liu N, Naveira H, Nene V, Nguyen N, Pearson MD, Pritham EJ, Puiu D, Qi Y, Ranson H, Ribeiro JM, Roberston HM, Severson DW, Shumway M, Stanke M, Strausberg RL, Sun C, Sutton G, Tu ZJ, Tubio JM, Unger MF, Vanlandingham DL, Vilella AJ, White O, White JR, Wondji CS, Wortman J, Zdobnov EM, Birren B, Christensen BM, Collins FH, Cornel A, Dimopoulos G, Hannick LI, Higgs S, Lanzaro GC, Lawson D, Lee NH, Muskavitch MA, Raikhel AS, Atkinson PW | display-authors = 6 | title = Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics | journal = Science | volume = 330 | issue = 6000 | pages = 86–8 | date = October 2010 | pmid = 20929810 | pmc = 3740384 | doi = 10.1126/science.1191864 | bibcode = 2010Sci...330...86A }}</ref>)
**''[[Drosophila albomicans]]'', fruit fly (2012<ref name="pmid22439699">{{cite journal | vauthors = Zhou Q, Zhu HM, Huang QF, Zhao L, Zhang GJ, Roy SW, Vicoso B, Xuan ZL, Ruan J, Zhang Y, Zhao RP, Ye C, Zhang XQ, Wang J, Wang W, Bachtrog D | display-authors = 6 | title = Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans | journal = BMC Genomics | volume = 13 | issue = | pages = 109 | date = March 2012 | pmid = 22439699 | pmc = 3353239 | doi = 10.1186/1471-2164-13-109 | url = }}</ref>)
**''[[Drosophila albomicans]]'', fruit fly (2012<ref>[http://www.biomedcentral.com/1471-2164/13/109]</ref>)
**''[[Drosophila ananassae]]'', fruit fly (2007<ref name="D12GC">{{cite journal | vauthors = Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artieri CG, Barbash DA, Barker D, Barsanti P, Batterham P, Batzoglou S, Begun D, Bhutkar A, Blanco E, Bosak SA, Bradley RK, Brand AD, Brent MR, Brooks AN, Brown RH, Butlin RK, Caggese C, Calvi BR, Bernardo de Carvalho A, Caspi A, Castrezana S, Celniker SE, Chang JL, Chapple C, Chatterji S, Chinwalla A, Civetta A, Clifton SW, Comeron JM, Costello JC, Coyne JA, Daub J, David RG, Delcher AL, Delehaunty K, Do CB, Ebling H, Edwards K, Eickbush T, Evans JD, Filipski A, Findeiss S, Freyhult E, Fulton L, Fulton R, Garcia AC, Gardiner A, Garfield DA, Garvin BE, Gibson G, Gilbert D, Gnerre S, Godfrey J, Good R, Gotea V, Gravely B, Greenberg AJ, Griffiths-Jones S, Gross S, Guigo R, Gustafson EA, Haerty W, Hahn MW, Halligan DL, Halpern AL, Halter GM, Han MV, Heger A, Hillier L, Hinrichs AS, Holmes I, Hoskins RA, Hubisz MJ, Hultmark D, Huntley MA, Jaffe DB, Jagadeeshan S, Jeck WR, Johnson J, Jones CD, Jordan WC, Karpen GH, Kataoka E, Keightley PD, Kheradpour P, Kirkness EF, Koerich LB, Kristiansen K, Kudrna D, Kulathinal RJ, Kumar S, Kwok R, Lander E, Langley CH, Lapoint R, Lazzaro BP, Lee SJ, Levesque L, Li R, Lin CF, Lin MF, Lindblad-Toh K, Llopart A, Long M, Low L, Lozovsky E, Lu J, Luo M, Machado CA, Makalowski W, Marzo M, Matsuda M, Matzkin L, McAllister B, McBride CS, McKernan B, McKernan K, Mendez-Lago M, Minx P, Mollenhauer MU, Montooth K, Mount SM, Mu X, Myers E, Negre B, Newfeld S, Nielsen R, Noor MA, O'Grady P, Pachter L, Papaceit M, Parisi MJ, Parisi M, Parts L, Pedersen JS, Pesole G, Phillippy AM, Ponting CP, Pop M, Porcelli D, Powell JR, Prohaska S, Pruitt K, Puig M, Quesneville H, Ram KR, Rand D, Rasmussen MD, Reed LK, Reenan R, Reily A, Remington KA, Rieger TT, Ritchie MG, Robin C, Rogers YH, Rohde C, Rozas J, Rubenfield MJ, Ruiz A, Russo S, Salzberg SL, Sanchez-Gracia A, Saranga DJ, Sato H, Schaeffer SW, Schatz MC, Schlenke T, Schwartz R, Segarra C, Singh RS, Sirot L, Sirota M, Sisneros NB, Smith CD, Smith TF, Spieth J, Stage DE, Stark A, Stephan W, Strausberg RL, Strempel S, Sturgill D, Sutton G, Sutton GG, Tao W, Teichmann S, Tobari YN, Tomimura Y, Tsolas JM, Valente VL, Venter E, Venter JC, Vicario S, Vieira FG, Vilella AJ, Villasante A, Walenz B, Wang J, Wasserman M, Watts T, Wilson D, Wilson RK, Wing RA, Wolfner MF, Wong A, Wong GK, Wu CI, Wu G, Yamamoto D, Yang HP, Yang SP, Yorke JA, Yoshida K, Zdobnov E, Zhang P, Zhang Y, Zimin AV, Baldwin J, Abdouelleil A, Abdulkadir J, Abebe A, Abera B, Abreu J, Acer SC, Aftuck L, Alexander A, An P, Anderson E, Anderson S, Arachi H, Azer M, Bachantsang P, Barry A, Bayul T, Berlin A, Bessette D, Bloom T, Blye J, Boguslavskiy L, Bonnet C, Boukhgalter B, Bourzgui I, Brown A, Cahill P, Channer S, Cheshatsang Y, Chuda L, Citroen M, Collymore A, Cooke P, Costello M, D'Aco K, Daza R, De Haan G, DeGray S, DeMaso C, Dhargay N, Dooley K, Dooley E, Doricent M, Dorje P, Dorjee K, Dupes A, Elong R, Falk J, Farina A, Faro S, Ferguson D, Fisher S, Foley CD, Franke A, Friedrich D, Gadbois L, Gearin G, Gearin CR, Giannoukos G, Goode T, Graham J, Grandbois E, Grewal S, Gyaltsen K, Hafez N, Hagos B, Hall J, Henson C, Hollinger A, Honan T, Huard MD, Hughes L, Hurhula B, Husby ME, Kamat A, Kanga B, Kashin S, Khazanovich D, Kisner P, Lance K, Lara M, Lee W, Lennon N, Letendre F, LeVine R, Lipovsky A, Liu X, Liu J, Liu S, Lokyitsang T, Lokyitsang Y, Lubonja R, Lui A, MacDonald P, Magnisalis V, Maru K, Matthews C, McCusker W, McDonough S, Mehta T, Meldrim J, Meneus L, Mihai O, Mihalev A, Mihova T, Mittelman R, Mlenga V, Montmayeur A, Mulrain L, Navidi A, Naylor J, Negash T, Nguyen T, Nguyen N, Nicol R, Norbu C, Norbu N, Novod N, O'Neill B, Osman S, Markiewicz E, Oyono OL, Patti C, Phunkhang P, Pierre F, Priest M, Raghuraman S, Rege F, Reyes R, Rise C, Rogov P, Ross K, Ryan E, Settipalli S, Shea T, Sherpa N, Shi L, Shih D, Sparrow T, Spaulding J, Stalker J, Stange-Thomann N, Stavropoulos S, Stone C, Strader C, Tesfaye S, Thomson T, Thoulutsang Y, Thoulutsang D, Topham K, Topping I, Tsamla T, Vassiliev H, Vo A, Wangchuk T, Wangdi T, Weiand M, Wilkinson J, Wilson A, Yadav S, Young G, Yu Q, Zembek L, Zhong D, Zimmer A, Zwirko Z, Jaffe DB, Alvarez P, Brockman W, Butler J, Chin C, Gnerre S, Grabherr M, Kleber M, Mauceli E, MacCallum I | display-authors = 6 | title = Evolution of genes and genomes on the Drosophila phylogeny | journal = Nature | volume = 450 | issue = 7167 | pages = 203–18 | date = November 2007 | pmid = 17994087 | doi = 10.1038/nature06341 | bibcode = 2007Natur.450..203C }}</ref>)
**''[[Drosophila ananassae]]'', fruit fly (2007<ref name="D12GC">{{cite journal | vauthors = Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artieri CG, Barbash DA, Barker D, Barsanti P, Batterham P, Batzoglou S, Begun D, Bhutkar A, Blanco E, Bosak SA, Bradley RK, Brand AD, Brent MR, Brooks AN, Brown RH, Butlin RK, Caggese C, Calvi BR, Bernardo de Carvalho A, Caspi A, Castrezana S, Celniker SE, Chang JL, Chapple C, Chatterji S, Chinwalla A, Civetta A, Clifton SW, Comeron JM, Costello JC, Coyne JA, Daub J, David RG, Delcher AL, Delehaunty K, Do CB, Ebling H, Edwards K, Eickbush T, Evans JD, Filipski A, Findeiss S, Freyhult E, Fulton L, Fulton R, Garcia AC, Gardiner A, Garfield DA, Garvin BE, Gibson G, Gilbert D, Gnerre S, Godfrey J, Good R, Gotea V, Gravely B, Greenberg AJ, Griffiths-Jones S, Gross S, Guigo R, Gustafson EA, Haerty W, Hahn MW, Halligan DL, Halpern AL, Halter GM, Han MV, Heger A, Hillier L, Hinrichs AS, Holmes I, Hoskins RA, Hubisz MJ, Hultmark D, Huntley MA, Jaffe DB, Jagadeeshan S, Jeck WR, Johnson J, Jones CD, Jordan WC, Karpen GH, Kataoka E, Keightley PD, Kheradpour P, Kirkness EF, Koerich LB, Kristiansen K, Kudrna D, Kulathinal RJ, Kumar S, Kwok R, Lander E, Langley CH, Lapoint R, Lazzaro BP, Lee SJ, Levesque L, Li R, Lin CF, Lin MF, Lindblad-Toh K, Llopart A, Long M, Low L, Lozovsky E, Lu J, Luo M, Machado CA, Makalowski W, Marzo M, Matsuda M, Matzkin L, McAllister B, McBride CS, McKernan B, McKernan K, Mendez-Lago M, Minx P, Mollenhauer MU, Montooth K, Mount SM, Mu X, Myers E, Negre B, Newfeld S, Nielsen R, Noor MA, O'Grady P, Pachter L, Papaceit M, Parisi MJ, Parisi M, Parts L, Pedersen JS, Pesole G, Phillippy AM, Ponting CP, Pop M, Porcelli D, Powell JR, Prohaska S, Pruitt K, Puig M, Quesneville H, Ram KR, Rand D, Rasmussen MD, Reed LK, Reenan R, Reily A, Remington KA, Rieger TT, Ritchie MG, Robin C, Rogers YH, Rohde C, Rozas J, Rubenfield MJ, Ruiz A, Russo S, Salzberg SL, Sanchez-Gracia A, Saranga DJ, Sato H, Schaeffer SW, Schatz MC, Schlenke T, Schwartz R, Segarra C, Singh RS, Sirot L, Sirota M, Sisneros NB, Smith CD, Smith TF, Spieth J, Stage DE, Stark A, Stephan W, Strausberg RL, Strempel S, Sturgill D, Sutton G, Sutton GG, Tao W, Teichmann S, Tobari YN, Tomimura Y, Tsolas JM, Valente VL, Venter E, Venter JC, Vicario S, Vieira FG, Vilella AJ, Villasante A, Walenz B, Wang J, Wasserman M, Watts T, Wilson D, Wilson RK, Wing RA, Wolfner MF, Wong A, Wong GK, Wu CI, Wu G, Yamamoto D, Yang HP, Yang SP, Yorke JA, Yoshida K, Zdobnov E, Zhang P, Zhang Y, Zimin AV, Baldwin J, Abdouelleil A, Abdulkadir J, Abebe A, Abera B, Abreu J, Acer SC, Aftuck L, Alexander A, An P, Anderson E, Anderson S, Arachi H, Azer M, Bachantsang P, Barry A, Bayul T, Berlin A, Bessette D, Bloom T, Blye J, Boguslavskiy L, Bonnet C, Boukhgalter B, Bourzgui I, Brown A, Cahill P, Channer S, Cheshatsang Y, Chuda L, Citroen M, Collymore A, Cooke P, Costello M, D'Aco K, Daza R, De Haan G, DeGray S, DeMaso C, Dhargay N, Dooley K, Dooley E, Doricent M, Dorje P, Dorjee K, Dupes A, Elong R, Falk J, Farina A, Faro S, Ferguson D, Fisher S, Foley CD, Franke A, Friedrich D, Gadbois L, Gearin G, Gearin CR, Giannoukos G, Goode T, Graham J, Grandbois E, Grewal S, Gyaltsen K, Hafez N, Hagos B, Hall J, Henson C, Hollinger A, Honan T, Huard MD, Hughes L, Hurhula B, Husby ME, Kamat A, Kanga B, Kashin S, Khazanovich D, Kisner P, Lance K, Lara M, Lee W, Lennon N, Letendre F, LeVine R, Lipovsky A, Liu X, Liu J, Liu S, Lokyitsang T, Lokyitsang Y, Lubonja R, Lui A, MacDonald P, Magnisalis V, Maru K, Matthews C, McCusker W, McDonough S, Mehta T, Meldrim J, Meneus L, Mihai O, Mihalev A, Mihova T, Mittelman R, Mlenga V, Montmayeur A, Mulrain L, Navidi A, Naylor J, Negash T, Nguyen T, Nguyen N, Nicol R, Norbu C, Norbu N, Novod N, O'Neill B, Osman S, Markiewicz E, Oyono OL, Patti C, Phunkhang P, Pierre F, Priest M, Raghuraman S, Rege F, Reyes R, Rise C, Rogov P, Ross K, Ryan E, Settipalli S, Shea T, Sherpa N, Shi L, Shih D, Sparrow T, Spaulding J, Stalker J, Stange-Thomann N, Stavropoulos S, Stone C, Strader C, Tesfaye S, Thomson T, Thoulutsang Y, Thoulutsang D, Topham K, Topping I, Tsamla T, Vassiliev H, Vo A, Wangchuk T, Wangdi T, Weiand M, Wilkinson J, Wilson A, Yadav S, Young G, Yu Q, Zembek L, Zhong D, Zimmer A, Zwirko Z, Jaffe DB, Alvarez P, Brockman W, Butler J, Chin C, Gnerre S, Grabherr M, Kleber M, Mauceli E, MacCallum I | display-authors = 6 | title = Evolution of genes and genomes on the Drosophila phylogeny | journal = Nature | volume = 450 | issue = 7167 | pages = 203–18 | date = November 2007 | pmid = 17994087 | doi = 10.1038/nature06341 | bibcode = 2007Natur.450..203C }}</ref>)
**''[[Drosophila biarmipes]]'', fruit fly (2011<ref name="modEncode">http://www.hgsc.bcm.tmc.edu/project-species-i-Drosophila_modENCODE.hgsc</ref>)
**''[[Drosophila biarmipes]]'', fruit fly (2011<ref name="modEncode">{{cite web | title = Drosophila modENCODE Project BCM-HGSC | url = http://www.hgsc.bcm.tmc.edu/project-species-i-Drosophila_modENCODE.hgsc | work = Baylor College of Medicine, Human Genome Sequencing Center }}</ref>)
**''[[Drosophila bipectinata]]'', fruit fly (2011<ref name="modEncode"/>)
**''[[Drosophila bipectinata]]'', fruit fly (2011<ref name="modEncode"/>)
**''[[Drosophila erecta]]'', fruit fly (2007<ref name="D12GC"/>)
**''[[Drosophila erecta]]'', fruit fly (2007<ref name="D12GC"/>)
Line 402: Line 402:
**''[[Drosophila pseudoobscura]]'', fruit fly (2005<ref>{{cite journal | vauthors = Richards S, Liu Y, Bettencourt BR, Hradecky P, Letovsky S, Nielsen R, Thornton K, Hubisz MJ, Chen R, Meisel RP, Couronne O, Hua S, Smith MA, Zhang P, Liu J, Bussemaker HJ, van Batenburg MF, Howells SL, Scherer SE, Sodergren E, Matthews BB, Crosby MA, Schroeder AJ, Ortiz-Barrientos D, Rives CM, Metzker ML, Muzny DM, Scott G, Steffen D, Wheeler DA, Worley KC, Havlak P, Durbin KJ, Egan A, Gill R, Hume J, Morgan MB, Miner G, Hamilton C, Huang Y, Waldron L, Verduzco D, Clerc-Blankenburg KP, Dubchak I, Noor MA, Anderson W, White KP, Clark AG, Schaeffer SW, Gelbart W, Weinstock GM, Gibbs RA | display-authors = 6 | title = Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution | journal = Genome Research | volume = 15 | issue = 1 | pages = 1–18 | date = January 2005 | pmid = 15632085 | pmc = 540289 | doi = 10.1101/gr.3059305 }}</ref>)
**''[[Drosophila pseudoobscura]]'', fruit fly (2005<ref>{{cite journal | vauthors = Richards S, Liu Y, Bettencourt BR, Hradecky P, Letovsky S, Nielsen R, Thornton K, Hubisz MJ, Chen R, Meisel RP, Couronne O, Hua S, Smith MA, Zhang P, Liu J, Bussemaker HJ, van Batenburg MF, Howells SL, Scherer SE, Sodergren E, Matthews BB, Crosby MA, Schroeder AJ, Ortiz-Barrientos D, Rives CM, Metzker ML, Muzny DM, Scott G, Steffen D, Wheeler DA, Worley KC, Havlak P, Durbin KJ, Egan A, Gill R, Hume J, Morgan MB, Miner G, Hamilton C, Huang Y, Waldron L, Verduzco D, Clerc-Blankenburg KP, Dubchak I, Noor MA, Anderson W, White KP, Clark AG, Schaeffer SW, Gelbart W, Weinstock GM, Gibbs RA | display-authors = 6 | title = Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution | journal = Genome Research | volume = 15 | issue = 1 | pages = 1–18 | date = January 2005 | pmid = 15632085 | pmc = 540289 | doi = 10.1101/gr.3059305 }}</ref>)
**''[[Drosophila rhopaloa]]'', fruit fly (2011<ref name="modEncode"/>)
**''[[Drosophila rhopaloa]]'', fruit fly (2011<ref name="modEncode"/>)
**''[[Drosophila santomea]]'', fruit fly (<ref>http://genomics.princeton.edu/AndolfattoLab/Dsantomea_genome.html</ref>)
**''[[Drosophila santomea]]'', fruit fly (<ref>{{cite web | title = The Drosophila santomea genome - release 1.0 | url = http://genomics.princeton.edu/AndolfattoLab/Dsantomea_genome.html | work = Andolfatto Lab | publisher = Princeton University }}</ref>)
**''[[Drosophila sechellia]]'', fruit fly (2007<ref name="D12GC"/>)
**''[[Drosophila sechellia]]'', fruit fly (2007<ref name="D12GC"/>)
**''[[Drosophila simulans]]'', fruit fly (2007<ref name="D12GC"/>)
**''[[Drosophila simulans]]'', fruit fly (2007<ref name="D12GC"/>)
Line 438: Line 438:
===Crustaceans===
===Crustaceans===


*''[[Daphnia pulex]]'', [[water flea]] (2007<ref>http://daphnia.cgb.indiana.edu/{{dead link|date=January 2018 |bot=InternetArchiveBot |fix-attempted=yes }}</ref><ref>{{cite web |url=http://genome.jgi-psf.org/Dappu1/Dappu1.home.html |title=''Daphnia pulex'' v1.0 |publisher=[[DOE Joint Genome Institute]] |access-date=2009-11-29}}</ref><ref>{{cite journal | vauthors = Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, Detter JC, Dong Q, Dusheyko S, Eads BD, Fröhlich T, Geiler-Samerotte KA, Gerlach D, Hatcher P, Jogdeo S, Krijgsveld J, Kriventseva EV, Kültz D, Laforsch C, Lindquist E, Lopez J, Manak JR, Muller J, Pangilinan J, Patwardhan RP, Pitluck S, Pritham EJ, Rechtsteiner A, Rho M, Rogozin IB, Sakarya O, Salamov A, Schaack S, Shapiro H, Shiga Y, Skalitzky C, Smith Z, Souvorov A, Sung W, Tang Z, Tsuchiya D, Tu H, Vos H, Wang M, Wolf YI, Yamagata H, Yamada T, Ye Y, Shaw JR, Andrews J, Crease TJ, Tang H, Lucas SM, Robertson HM, Bork P, Koonin EV, Zdobnov EM, Grigoriev IV, Lynch M, Boore JL | display-authors = 6 | title = The ecoresponsive genome of Daphnia pulex | journal = Science | volume = 331 | issue = 6017 | pages = 555–61 | date = February 2011 | pmid = 21292972 | pmc = 3529199 | doi = 10.1126/science.1197761 | bibcode = 2011Sci...331..555C }}</ref>)
*''[[Daphnia pulex]]'', [[water flea]] (2007<ref>{{cite web | title = The Daphnia Genomics Consortium | url = http://daphnia.cgb.indiana.edu/ | archive-url = https://web.archive.org/web/20100109090259/http://daphnia.cgb.indiana.edu | archive-date = 9 January 2010 }}</ref><ref>{{cite web |url=http://genome.jgi-psf.org/Dappu1/Dappu1.home.html |title=''Daphnia pulex'' v1.0 |publisher=[[DOE Joint Genome Institute]] |access-date=2009-11-29}}</ref><ref>{{cite journal | vauthors = Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, Detter JC, Dong Q, Dusheyko S, Eads BD, Fröhlich T, Geiler-Samerotte KA, Gerlach D, Hatcher P, Jogdeo S, Krijgsveld J, Kriventseva EV, Kültz D, Laforsch C, Lindquist E, Lopez J, Manak JR, Muller J, Pangilinan J, Patwardhan RP, Pitluck S, Pritham EJ, Rechtsteiner A, Rho M, Rogozin IB, Sakarya O, Salamov A, Schaack S, Shapiro H, Shiga Y, Skalitzky C, Smith Z, Souvorov A, Sung W, Tang Z, Tsuchiya D, Tu H, Vos H, Wang M, Wolf YI, Yamagata H, Yamada T, Ye Y, Shaw JR, Andrews J, Crease TJ, Tang H, Lucas SM, Robertson HM, Bork P, Koonin EV, Zdobnov EM, Grigoriev IV, Lynch M, Boore JL | display-authors = 6 | title = The ecoresponsive genome of Daphnia pulex | journal = Science | volume = 331 | issue = 6017 | pages = 555–61 | date = February 2011 | pmid = 21292972 | pmc = 3529199 | doi = 10.1126/science.1197761 | bibcode = 2011Sci...331..555C }}</ref>)
* ''[[Neocaridina denticulata]]'', [[shrimp]] (2014<ref>{{cite journal | vauthors = Kenny NJ, Sin YW, Shen X, Zhe Q, Wang W, Chan TF, Tobe SS, Shimeld SM, Chu KH, Hui JH | display-authors = 6 | title = Genomic sequence and experimental tractability of a new decapod shrimp model, Neocaridina denticulata | journal = Marine Drugs | volume = 12 | issue = 3 | pages = 1419–37 | date = March 2014 | pmid = 24619275 | pmc = 3967219 | doi = 10.3390/md12031419 }}</ref>)
* ''[[Neocaridina denticulata]]'', [[shrimp]] (2014<ref>{{cite journal | vauthors = Kenny NJ, Sin YW, Shen X, Zhe Q, Wang W, Chan TF, Tobe SS, Shimeld SM, Chu KH, Hui JH | display-authors = 6 | title = Genomic sequence and experimental tractability of a new decapod shrimp model, Neocaridina denticulata | journal = Marine Drugs | volume = 12 | issue = 3 | pages = 1419–37 | date = March 2014 | pmid = 24619275 | pmc = 3967219 | doi = 10.3390/md12031419 }}</ref>)
* ''[[Parhyale hawaiensis]]'', [[amphipod]] (2016<ref>{{cite journal | vauthors = Kao D, Lai AG, Stamataki E, Rosic S, Konstantinides N, Jarvis E, Di Donfrancesco A, Pouchkina-Stancheva N, Sémon M, Grillo M, Bruce H, Kumar S, Siwanowicz I, Le A, Lemire A, Eisen MB, Extavour C, Browne WE, Wolff C, Averof M, Patel NH, Sarkies P, Pavlopoulos A, Aboobaker A | display-authors = 6 | title = Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion | journal = eLife | volume = 5 | pages = e20062 | date = November 2016 | pmid = 27849518 | doi = 10.7554/eLife.20062 }}</ref>)
* ''[[Parhyale hawaiensis]]'', [[amphipod]] (2016<ref>{{cite journal | vauthors = Kao D, Lai AG, Stamataki E, Rosic S, Konstantinides N, Jarvis E, Di Donfrancesco A, Pouchkina-Stancheva N, Sémon M, Grillo M, Bruce H, Kumar S, Siwanowicz I, Le A, Lemire A, Eisen MB, Extavour C, Browne WE, Wolff C, Averof M, Patel NH, Sarkies P, Pavlopoulos A, Aboobaker A | display-authors = 6 | title = Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion | journal = eLife | volume = 5 | pages = e20062 | date = November 2016 | pmid = 27849518 | doi = 10.7554/eLife.20062 }}</ref>)

Revision as of 12:29, 23 August 2018

This list of sequenced animal genomes contains animal species for which complete genome sequences have been assembled, annotated and published. Substantially complete draft genomes are included, but not partial genome sequences or organelle-only sequences.

Porifera

Ctenophora

Placozoa

Cnidaria

Deuterostomia

Hemichordates

Echinoderms

Urochordates

Cephalochordates

Cyclostomes

Cartilaginous fish

Bony fish

Amphibians

Reptiles

Birds

Mammals

Protostomia

Insects

Crustaceans

Chelicerates

Myriapoda

Tardigrades

Molluscs

Platyhelminthes

Nematodes

Annelids

Brachiopoda

Rotifera

See also

References

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