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List of sequenced archaeal genomes

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This list of sequenced archaeal genomes contains all the archaea known to have publicly available complete genome sequences that have been assembled, annotated and deposited in public databases. Archea are of particular interest for biotechnology since they can exist under extreme conditions.

Sequenced Archaeal Genomes
Species Strain Base Pairs Genes Reference
Aeropyrum pernix K1 1,669,695 2,694 [1]
Archaeoglobus fulgidus DSM4304 2,178,400 2,407 [2]
Haloarcula marismortui ATCC43049 3,131,724 3,131 [3]
Halobacterium species NRC1 2,014,239 2,058 [4]
Methanobacterium thermoautotrophicum delta-H 1,751,377 1,869 [5]
Methanocaldococcus jannaschii DSM2661 1,664,970 1,715 [6]
Methanococcoides burtonii DSM6242 2,575,032 2,273 Unpublished
Methanococcus maripaludis S2 1,661,137 1,722 Unpublished
Methanopyrus kandleri AV19 1,694,969 1,691 [7]
Methanosarcina acetivorans C2A 5,751,492 4,540 [8]
Methanosarcina barkeri fusaro 4,837,408 3,607 Unpublished
Methanosarcina mazei Goe1 4,096,345 3,371 [9]
Methanosphaera stadtmanae DSM3091 1,767,403 1,534 [10]
Methanospirillum hungatei JF-1 3,544,738 3,139 Unpublished
Nanoarchaeum equitans Kin4M 490,885 536 [11]
Natronomonas pharaonis DSM2160 2,595,221 2,675 [12]
Picrophilus torridus DSM9790 1,545,895 1,535 Unpublished
Pyrobaculum aerophilum IM2 2,222,430 2,605 [13]
Pyrococcus abyssi GE5 1,765,118 1,784 [14]
Pyrococcus furiosus DSM3638 1,908,256 2,065 [15]
Pyrococcus horikoshii OT3 1,738,505 2,061 [16]
Sulfolobus acidocaldarius DSM639 2,225,959 2,223 [17]
Sulfolobus solfataricus P2 2,992,245 2,995 Unpublished
Sulfolobus tokodaii 7 2,694,765 2,826 [18]
Thermococcus kodakaraensis KOD1 2,088,737 2,306 Unpublished
Thermoplasma acidophilum DSM1728 1,564,906 1,478 [19]
Thermoplasma volcanium GSS1 1,584,804 1,526 [20]

See also

References

  1. ^ Kawarabayasi Y, Hino Y, Horikawa H; et al. (1999). "Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1". DNA Res. 6 (2): 83–101, 145–52. doi:10.1093/dnares/6.2.83. PMID 10382966. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  2. ^ Klenk HP, Clayton RA, Tomb JF; et al. (1997). "The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus". Nature. 390 (6658): 364–70. doi:10.1038/37052. PMID 9389475. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  3. ^ Baliga NS, Bonneau R, Facciotti MT; et al. (2004). "Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea". Genome Res. 14 (11): 2221–34. doi:10.1101/gr.2700304. PMC 525680. PMID 15520287. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  4. ^ Ng WV, Kennedy SP, Mahairas GG; et al. (2000). "Genome sequence of Halobacterium species NRC-1". Proc. Natl. Acad. Sci. U.S.A. 97 (22): 12176–81. doi:10.1073/pnas.190337797. PMC 17314. PMID 11016950. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  5. ^ Smith DR, Doucette-Stamm LA, Deloughery C; et al. (1997). "Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics". J. Bacteriol. 179 (22): 7135–55. PMC 179657. PMID 9371463. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  6. ^ Bult CJ, White O, Olsen GJ; et al. (1996). "Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii". Science (journal). 273 (5278): 1058–73. PMID 8688087. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  7. ^ Slesarev AI, Mezhevaya KV, Makarova KS; et al. (2002). "The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens". Proc. Natl. Acad. Sci. U.S.A. 99 (7): 4644–9. doi:10.1073/pnas.032671499. PMC 123701. PMID 11930014. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  8. ^ Galagan JE, Nusbaum C, Roy A; et al. (2002). "The genome of M. acetivorans reveals extensive metabolic and physiological diversity". Genome Res. 12 (4): 532–42. doi:10.1101/gr.223902. PMC 187521. PMID 11932238. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  9. ^ Deppenmeier U, Johann A, Hartsch T; et al. (2002). "The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea". J. Mol. Microbiol. Biotechnol. 4 (4): 453–61. PMID 12125824. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  10. ^ Fricke WF, Seedorf H, Henne A; et al. (2006). "The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis". J. Bacteriol. 188 (2): 642–58. doi:10.1128/JB.188.2.642-658.2006. PMC 1347301. PMID 16385054. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  11. ^ Waters E, Hohn MJ, Ahel I; et al. (2003). "The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism". Proc. Natl. Acad. Sci. U.S.A. 100 (22): 12984–8. doi:10.1073/pnas.1735403100. PMC 240731. PMID 14566062. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  12. ^ Falb M, Pfeiffer F, Palm P; et al. (2005). "Living with two extremes: conclusions from the genome sequence of Natronomonas pharaonis". Genome Res. 15 (10): 1336–43. doi:10.1101/gr.3952905. PMC 1240075. PMID 16169924. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  13. ^ Fitz-Gibbon ST, Ladner H, Kim UJ, Stetter KO, Simon MI, Miller JH (2002). "Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum". Proc. Natl. Acad. Sci. U.S.A. 99 (2): 984–9. doi:10.1073/pnas.241636498. PMC 117417. PMID 11792869. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  14. ^ Gaspin C, Cavaillé J, Erauso G, Bachellerie JP (2000). "Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes". J. Mol. Biol. 297 (4): 895–906. doi:10.1006/jmbi.2000.3593. PMID 10736225. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  15. ^ Maeder DL, Weiss RB, Dunn DM; et al. (1999). "Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequences". Genetics. 152 (4): 1299–305. PMC 1460691. PMID 10430560. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  16. ^ Kawarabayasi Y, Sawada M, Horikawa H; et al. (1998). "Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3". DNA Res. 5 (2): 55–76. doi:10.1093/dnares/5.2.55. PMID 9679194. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  17. ^ Chen L, Brügger K, Skovgaard M; et al. (2005). "The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota". J. Bacteriol. 187 (14): 4992–9. doi:10.1128/JB.187.14.4992-4999.2005. PMC 1169522. PMID 15995215. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  18. ^ Kawarabayasi Y, Hino Y, Horikawa H; et al. (2001). "Complete genome sequence of an aerobic thermoacidophilic crenarchaeon, Sulfolobus tokodaii strain7". DNA Res. 8 (4): 123–40. doi:10.1093/dnares/8.4.123. PMID 11572479. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  19. ^ Ruepp A, Graml W, Santos-Martinez ML; et al. (2000). "The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum". Nature. 407 (6803): 508–13. doi:10.1038/35035069. PMID 11029001. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  20. ^ Kawashima T, Amano N, Koike H; et al. (2000). "Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium". Proc. Natl. Acad. Sci. U.S.A. 97 (26): 14257–62. doi:10.1073/pnas.97.26.14257. PMC 18905. PMID 11121031. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
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