Purple bacteria or purple photosynthetic bacteria are Gram-negative proteobacteria that are phototrophic, capable of producing their own food via photosynthesis. They are pigmented with bacteriochlorophyll a or b, together with various carotenoids, which give them colours ranging between purple, red, brown, and orange. They may be divided into two groups – purple sulfur bacteria (Chromatiales, in part) and purple non-sulfur bacteria (Rhodospirillaceae). Purple bacteria are anoxygenic phototrophs widely spread in nature, but especially in aquatic environments, where there are anoxic conditions that favor the synthesis of their pigments.
Purple bacteria belong to phylum of Proteobacteria. This phylum was established by Carl Woese in 1987 calling it “purple bacteria and their relatives” even if this is not appropriate because most of them are not purple or photosynthetic. Phylum Proteobacteria is divided into six classes:Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, Deltaproteobacteria, Epsilonproteobacteria and Zetaproteobcateria. Purple bacteria are distributed between 3 classes:Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria each characterized by a photosynthetic phenotype. Alpha subdivision contains different photosynthetic purple bacteria species (for instance: Rhodospirillum, Rhodopseudomonas and Rhodomicrobium) but include also some non-photosyntetic purple ones of genera with nitrogen metabolism ( Rhizobium , Nitrobacter) whereas in betaproteobacteria subdivision there are few photosynthetic species.
- Other families
Purple sulfur bacteria are included in the gamma subgroup. Gammaproteobacteria is divided into 3 subgroups: gamma-1, gamma-2, gamma-3. In gamma-1 subgroup there are the purple photosynthetic bacteria that produce molecular sulfur (Chromatiaceae group and Ectothiorhodospiraceae group) and also the non-photosyntetic species (as Nitrosococcus oceani). The similarity between the photosynthetic machinery in these different lines indicates that it had a common origin, either from some common ancestor or passed by lateral transfer. Purple sulfur bacteria and purple nunsulfur bacteria were distinguished on the basis of physiological factors of their tolerance and utilization of sulfide: was considered that purple sulfur bacteria tolerate millimolar levels of sulfide and oxidized sulfide to sulfur globules stored intracellulary while purple nonsulfur bacteria species did neither. This kind of classification was not absoluted. It was refuted with classic chemostat experiments by Hansen and Van Gemerden (1972) that demonstrate the growing of many purple nonsulfur bacteria species at low levels of sulfide (0.5mM) and in so doing, oxidize sulfide to S0, S4O62-, or SO42-. The important distinction that remains from these two different metabolisms is that: any S0 formed by purple nonsulfur bacteria is not stored intracellularly but is deposited outside the cell (even if there are exception for this as Ectothiorhodospiraceae). So if grown on sulfide it is easy to differentiate purple sulfur bacteria from purple non sulfur bacteria because the microscopically globules of S0 are formed.
Purple Bacteria are able to perform different metabolisms that allow them to adapt to different and even extreme environmental conditions. They are mainly photoautotrophs, but are also known to be chemoautotrophic and photoheterotrophic. Since pigments synthesis does not take place in presence of oxygen, phototrophic growth only occurs in anoxic and light conditions. Howerver purple bacteria can also grow in dark and oxic environments. In fact they can be mixotrophs, capable of anaerobic and aerobic respiration or fermentation basing on the concentration of oxygen and availability of light.
Photosynthetic unit Purple bacteria use bacteriochlorophyll and carotenoids to obtain the light energy for photosynthesis. Electron transfer and photosynthetic reactions occur at the cell membrane in the photosynthetic unit which is composed by the light-harvesting complexes LHI and LHII and the photosynthetic reaction centre where the charge separation reaction occurs. These structures are located in the intracytoplasmic membrane, areas of the cytoplasmic membrane invaginated to form vesicle sacs, tubules, or single-paired or stacked lamellar sheets which have increased surface to maximize light absorption. Light-harvesting complexes are involved in the energy transfer to the reaction centre. These are integral membrane protein complexes consisting of monomers of α- and β- apoproteins, each one binding molecules of bacteriochlorophyll and carotenoids non-covalently. LHI is directly associated with the reaction centre forming a polymeric ring-like structure around it. LHI has an absorption maximum at 870 nm and it contains most of the bacteriochlorophyll of the photosynthetic unit. LHII contains less bacteriochlorophylls, has lower absorption maximum (850 nm) and is not present in all purple bacteria. Moreover, the photosynthetic unit in Purple Bacteria shows great plasticity, being able to adapt to the constantly changing light conditions. In fact these microorganisms are able to rearrange the composition and the concentration of the pigments, and consequently the absorption spectrum, in response to light variation.
Purple bacteria use cyclic electron transport driven by a series of redox reactions. Light-harvesting complexes surrounding a reaction centre (RC) harvest photons in the form of resonance energy, exciting chlorophyll pigments P870 or P960 located in the RC. Excited electrons are cycled from P870 to quinones QA and QB, then passed to cytochrome bc1, cytochrome c2, and back to P870. The reduced quinone QB attracts two cytoplasmic protons and becomes QH2, eventually being oxidized and releasing the protons to be pumped into the periplasm by the cytochrome bc1 complex. The resulting charge separation between the cytoplasm and periplasm generates a proton motive force used by ATP synthase to produce ATP energy.
Electron donors for anabolism
Purple bacteria are anoxygenic because they do not use water as electron donor to produce oxygen. Purple sulfur bacteria (PSB), use sulfide, sulfur, thiosulfate or hydrogen as electron donors. In addition, some species use ferrous iron as electron donor and one strain of Thiocapsa can use nitrite. Finally, even if the purple sulfur bacteria are typically photoautotroph, some of them are photoheterotroph and use different carbon sources and electron donor such as organic acids and fatty acids. On the other hand, purple non-sulfur bacteria, typically use hydrogen as an electron donor, but can also use sulfide at lower concentrations compared to PSB and some species can use thiosulfate or ferrous iron as electron donor. In contrast to the purple sulfur bacteria, the purple non sulfur bacteria are mostly photoheterotrophic and can use as electron donor and carbon sources such as sugars, amino acids, organic acids, and aromatic compounds like toluene or benzoate.
Purple bacteria lack external electron carriers to spontaneously reduce NAD(P)+ to NAD(P)H, so they must use their reduced quinones to endergonically reduce NAD(P)+. This process is driven by the proton motive force and is called reverse electron flow.
Purple bacteria inhabit illuminated anoxic aquatic and terrestrial environments. Even if sometimes the two major groups of purple bacteria, purple sulfur bacteria and purple nonsulfur bacteria, coexist in the same habitat, they occupy different niches. Purple sulfur bacteria are strongly photoautotrophs and are not adapted to an efficient metabolism and growth in the dark. A different speech applies to purple nonsulfur bacteria that are strongly photoheterotrophs, even if they are capable of photoautotrophy, and are equipped for living in dark environments. Purple sulfur bacteria can be found in different ecosystems with enough sulfate and light, some examples are shallow lagoons polluted by sewage or deep waters of lakes, in which they could even bloom. Blooms can both involve a single or a mixture of species. They can also be found in microbial mats where the lower layer decomposes and sulfate-reduction occurs.
Purple non sulfur bacteria can be found in both illuminated and dark environments with lack of sulfide. However, they hardly form blooms with sufficiently high concentration to be visible without enrichment techniques.
Purple bacteria have evolved effective strategies for photosynthesis in extreme environments, in fact they are quite successful in harsh habitats. In the 1960s the first halophiles and acidophiles of the genus Ectothiorhodospira were discovered. In the 1980s Thermochromatium tepidum, a thermophilic purple bacterium that can be found in North American hot springs, was isolated for the first time.
Purple bacteria are involved in the biogeochemical cycles of different nutrients. In fact they are able to photoautotrophically fix carbon, or to consume it photoheterotrophically; in both cases in anoxic conditions. However the most important role is played by consuming hydrogen sulphide: a highly toxic substance for plants, animals and other bacteria. In fact, the oxidation of hydrogen sulphide by purple bacteria produces non-toxic forms of sulfur, such as elemental sulfur and sulphate.
In addition, almost all non-sulfur purple bacteria are able to fix nitrogen (N2+8H+--->2NH3+H2), and Rba Sphaeroides, an alpha proteobacter, is capable of reducing nitrate to molecular nitrogen by denitrification.
Quantity and quality of light
Several studies have shown that a strong accumulation of phototrophic sulfur bacteria has been observed between 2 and 20 meters deep (in some cases even 30 m) of pelagic environments. This is due to the fact that in some environments the light transmission for various populations of phototrophic sulfur bacteria varies with a density from 0.015 to 10% Furthermore, Chromatiaceae have been found in chemocline environments over 20 m depths. The correlation between anoxygenic photosynthesis and the availability of solar radiation suggests that light is the main factor controlling all the activities of phototrophic sulfur bacteria. The density of pelagic communities of phototrophic sulfur bacteria extends beyond a depth range of 10 cm, while the less dense population (found in the Black Sea (0.068–0.94 μg BChle/dm−3), scattered over an interval of 30 m. Communities of phototrophic sulfur bacteria located in the coastal sediments of sandy, saline or muddy beaches live in an environment with a higher light gradient, limiting growth to the highest value between 1.5–5 mm of the sediments. At the same time, biomass densities of 900 mg bacteriochlorophyll/dm−3 can be attained in these latter systems.
Temperature and salinity
Purple sulfur bacteria (like green sulfur bacteria) typically form blooms in non-thermal aquatic ecosystems, some members have been found in hot springs. For example Chlorobaculum tepidum can only be found in some hot springs in New Zealand at a ph value between 4.3 and 6.2 and at a temperature above 56 °C. Another example are Thermochromatium tepidum, has been found in several hot springs in western North America at temperatures above 58 °C and may represent the most thermophilic proteobacteria existent. Of the purple sulfur bacteria, many members of the Chromatiaceae family are often found in fresh water and marine environments. About 10 species of Chromatiaceae are halophilic.
Syntrophy and symbioses
Like green sulfur bacteria, purple sulfur bacteria are also capable of symbiosis and can rapidly create stable associations between other purple sulfur bacteria and sulfur- or sulfate-reducing bacteria. These associations are based on a cycle of sulfur but not carbon compounds. Thus, a simultaneous growth of two bacteria partners takes place, which are fed by the oxidation of organic carbon and light substrates. Experiments with Chromatiaceae have pointed out that cell aggregates consisting of sulfate-reducing Proteobacterium Desulfocapsa Thiozymogenes and small cells of Chromatiaceae have been observed in the chemocline of an alpine mermocitic lake.
Purple bacteria were the first bacteria discovered[when?] to photosynthesize without having an oxygen byproduct. Instead, their byproduct is sulfur. This was demonstrated by first establishing the bacteria's reactions to different concentrations of oxygen. It was found that the bacteria moved quickly away from even the slightest trace of oxygen. Then a dish of the bacteria was taken, and a light was focused on one part of the dish, leaving the rest dark. As the bacteria cannot survive without light, all the bacteria moved into the circle of light, becoming very crowded. If the bacteria's byproduct was oxygen, the distances between individuals would become larger and larger as more oxygen was produced. But because of the bacteria's behavior in the focused light, it was concluded that the bacteria's photosynthetic byproduct could not be oxygen.
Researchers have theorized that some purple bacteria are related to the mitochondria, symbiotic bacteria in plant and animal cells today that act as organelles. Comparisons of their protein structure suggests that there is a common ancestor.
- Bryant DA, Frigaard NU (November 2006). "Prokaryotic photosynthesis and phototrophy illuminated". Trends in Microbiology. 14 (11): 488–96. doi:10.1016/j.tim.2006.09.001. PMID 16997562.
- Cohen-Bazire G, Sistrom WR, Stanier RY (February 1957). "Kinetic studies of pigment synthesis by non-sulfur purple bacteria". Journal of Cellular and Comparative Physiology. 49 (1): 25–68. doi:10.1002/jcp.1030490104. PMID 13416343.
- Stackebrandt E, Murray RG, Trüper HG (1988). "Proteobacteria classis nov., a Name for the Phylogenetic Taxon That Includes the "Purple Bacteria and Their Relatives"". International Journal of Systematic and Evolutionary Microbiology. 38 (3): 321–325. doi:10.1099/00207713-38-3-321. ISSN 1466-5026.
- Takaichi S, Daldal F, Thurnauer MC, Beatty JT (2009). "Distribution and Biosynthesis of Carotenoids". In Hunter CN (ed.). The Purple Phototrophic Bacteria. Advances in Photosynthesis and Respiration. 28. Dordrecht: Springer Netherlands. pp. 97–117. doi:10.1007/978-1-4020-8815-5_6. ISBN 978-1-4020-8814-8.
- Woese CR, Weisburg WG, Hahn CM, Paster BJ, Zablen LB, Lewis BJ, et al. (1985-06-01). "The Phylogeny of Purple Bacteria: The Gamma Subdivision". Systematic and Applied Microbiology. 6 (1): 25–33. doi:10.1016/S0723-2020(85)80007-2. ISSN 0723-2020.
- van Niel CB (1932-01-01). "On the morphology and physiology of the purple and green sulphur bacteria". Archiv für Mikrobiologie. 3 (1): 1–112. doi:10.1007/BF00454965. ISSN 1432-072X. S2CID 19597530.
- Hansen TA, van Gemerden H (1972-03-01). "Sulfide utilization by purple nonsulfur bacteria". Archiv für Mikrobiologie. 86 (1): 49–56. doi:10.1007/BF00412399. PMID 4628180. S2CID 7410927.
- Madigan MT, Jung DO, Daldal F, Fevzi T, Thurnauer MC, Beatty JT (2009). "An Overview of Purple Bacteria: Systematics, Physiology, and Habitats". In Hunter CN (ed.). The Purple Phototrophic Bacteria. Advances in Photosynthesis and Respiration. 28. Dordrecht: Springer Netherlands. pp. 1–15. doi:10.1007/978-1-4020-8815-5_1. ISBN 978-1-4020-8815-5.
- Keppen OI, Krasil'nikova EN, Lebedeva NV, Ivanovskiĭ RN (2013). "[Comparative study of metabolism of the purple photosynthetic bacteria grown in the light and in the dark under anaerobic and aerobic conditions]". Mikrobiologiia (in Russian). 82 (5): 534–41. PMID 25509391.
- Tsygankov AA, Khusnutdinova AN (2015-01-01). "Hydrogen in metabolism of purple bacteria and prospects of practical application". Microbiology. 84 (1): 1–22. doi:10.1134/S0026261715010154. ISSN 1608-3237. S2CID 14240332.
- Hädicke O, Grammel H, Klamt S (September 2011). "Metabolic network modeling of redox balancing and biohydrogen production in purple nonsulfur bacteria". BMC Systems Biology. 5 (1): 150. doi:10.1186/1752-0509-5-150. PMC 3203349. PMID 21943387.
- Ritz T, Damjanović A, Schulten K (March 2002). "The quantum physics of photosynthesis". ChemPhysChem. 3 (3): 243–8. doi:10.1002/1439-7641(20020315)3:3<243::AID-CPHC243>3.0.CO;2-Y. PMID 12503169.
- Niederman RA (2006). "Structure, Function and Formation of Bacterial Intracytoplasmic Membranes". In Shively JM (ed.). Complex Intracellular Structures in Prokaryotes. Microbiology Monographs. 2. Berlin, Heidelberg: Springer Berlin Heidelberg. pp. 193–227. doi:10.1007/7171_025. ISBN 978-3-540-32524-6.
- Francke C, Amesz J (November 1995). "The size of the photosynthetic unit in purple bacteria". Photosynthesis Research. 46 (1–2): 347–52. doi:10.1007/BF00020450. PMID 24301602. S2CID 23254767.
- Brotosudarmo TH, Limantara L, Prihastyanti MN (2015). "Adaptation of the Photosynthetic Unit of Purple Bacteria to Changes of Light Illumination Intensities". Procedia Chemistry. 14: 414–421. doi:10.1016/j.proche.2015.03.056.
- Klamt S, Grammel H, Straube R, Ghosh R, Gilles ED (2008-01-15). "Modeling the electron transport chain of purple non-sulfur bacteria". Molecular Systems Biology. 4: 156. doi:10.1038/msb4100191. PMC 2238716. PMID 18197174.
- Cogdell RJ, Gall A, Köhler J (August 2006). "The architecture and function of the light-harvesting apparatus of purple bacteria: from single molecules to in vivo membranes". Quarterly Reviews of Biophysics. 39 (3): 227–324. doi:10.1017/S0033583506004434. PMID 17038210.
- Blankenship RE (2002). Molecular mechanisms of photosynthesis. Oxford: Blackwell Science. ISBN 9780632043217. OCLC 49273347.
- Hu X, Damjanović A, Ritz T, Schulten K (May 1998). "Architecture and mechanism of the light-harvesting apparatus of purple bacteria". Proceedings of the National Academy of Sciences of the United States of America. 95 (11): 5935–41. Bibcode:1998PNAS...95.5935H. doi:10.1073/pnas.95.11.5935. PMC 34498. PMID 9600895.
- Basak N, Das D (2007-01-01). "The Prospect of Purple Non-Sulfur (PNS) Photosynthetic Bacteria for Hydrogen Production: The Present State of the Art". World Journal of Microbiology and Biotechnology. 23 (1): 31–42. doi:10.1007/s11274-006-9190-9. ISSN 0959-3993. S2CID 84224465.
- Ehrenreich A, Widdel F (December 1994). "Anaerobic oxidation of ferrous iron by purple bacteria, a new type of phototrophic metabolism". Applied and Environmental Microbiology. 60 (12): 4517–26. doi:10.1128/AEM.60.12.4517-4526.1994. PMC 202013. PMID 7811087.
- Brune DC (1995). "Sulfur Compounds as Photosynthetic Electron Donors". In Blankenship RE, Madigan MT, Bauer CE (eds.). Anoxygenic Photosynthetic Bacteria. Advances in Photosynthesis and Respiration. 2. Dordrecht: Springer Netherlands. pp. 847–870. doi:10.1007/0-306-47954-0_39. ISBN 978-0-306-47954-0.
- "The architecture and function of the light-harvesting apparatus of purple bacteria: from single molecules to in vivo membranes". ProQuest.
- Siefert E, Irgens RL, Pfennig N (1 January 1978). "Phototrophic purple and green bacteria in a sewage treatment plant". Applied and Environmental Microbiology. 35 (1): 38–44. doi:10.1128/AEM.35.1.38-44.1978. ISSN 0099-2240. PMC 242774. PMID 623470.
- Imhoff JF (2017). "Anoxygenic Phototrophic Bacteria from Extreme Environments". Modern Topics in the Phototrophic Prokaryotes: Environmental and Applied Aspects. Springer International Publishing. pp. 427–480. doi:10.1007/978-3-319-46261-5_13. ISBN 978-3-319-46259-2.
- Madigan MT (1995). "Microbiology of Nitrogen Fixation by Anoxygenic Photosynthetic Bacteria". In Blankenship RE, Madigan MT, Bauer CE (eds.). Anoxygenic Photosynthetic Bacteria. Advances in Photosynthesis and Respiration. 2. Dordrecht: Springer Netherlands. pp. 915–928. doi:10.1007/0-306-47954-0_42. ISBN 978-0-306-47954-0.
- Satoh T, Hoshino Y, Kitamura H (July 1976). "Rhodopseudomonas sphaeroides forma sp. denitrificans, a denitrifying strain as a subspecies of Rhodopseudomonas sphaeroides". Archives of Microbiology. 108 (3): 265–9. doi:10.1007/BF00454851. PMID 1085137. S2CID 20375188.
- Herbert RA, Ranchou-Peyruse A, Duran R, Guyoneaud R, Schwabe S (August 2005). "Characterization of purple sulfur bacteria from the South Andros Black Hole cave system: highlights taxonomic problems for ecological studies among the genera Allochromatium and Thiocapsa". Environmental Microbiology. 7 (8): 1260–8. doi:10.1111/j.1462-2920.2005.00815.x. PMID 16011763.
- Overmann J (2008). "Ecology of Phototrophic Sulfur Bacteria". In Hell R, Dahl C, Knaff D, Leustek T (eds.). Sulfur Metabolism in Phototrophic Organisms. Advances in Photosynthesis and Respiration. 27. Dordrecht: Springer Netherlands. pp. 375–396. doi:10.1007/978-1-4020-6863-8_19. ISBN 978-1-4020-6862-1.
- Manske AK, Glaeser J, Kuypers MM, Overmann J (December 2005). "Physiology and phylogeny of green sulfur bacteria forming a monospecific phototrophic assemblage at a depth of 100 meters in the Black Sea". Applied and Environmental Microbiology. 71 (12): 8049–60. doi:10.1128/aem.71.12.8049-8060.2005. PMC 1317439. PMID 16332785.
- Van Gemerden H, Mas J (1995). "Ecology of Phototrophic Sulfur Bacteria". Anoxygenic Photosynthetic Bacteria. Advances in Photosynthesis and Respiration. 2. Dordrecht: Springer Netherlands. pp. 49–85. doi:10.1007/0-306-47954-0_4. ISBN 978-0-7923-3681-5.
- Van Gemerden H, Tughan CS, De Wit R, Herbert RA (1989-02-01). "Laminated microbial ecosystems on sheltered beaches in Scapa Flow, Orkney Islands". FEMS Microbiology Ecology. 5 (2): 87–101. doi:10.1111/j.1574-6968.1989.tb03661.x. ISSN 0168-6496.
- Castenholz RW, Bauld J, Jørgenson BB (1990-12-01). "Anoxygenic microbial mats of hot springs: thermophilic Chlorobium sp". FEMS Microbiology Letters. 74 (4): 325–336. doi:10.1111/j.1574-6968.1990.tb04079.x. ISSN 0378-1097.
- Imhoff JF (2005). "Rhodoblastus Imhoff 2001, 1865VP". Bergey's Manual® of Systematic Bacteriology. New York: Springer-Verlag. pp. 471–473. doi:10.1007/0-387-29298-5_114. ISBN 0-387-24145-0.
- Warthmann R, Cypionka H, Pfennig N (1992-04-01). "Photoproduction of H2 from acetate by syntrophic cocultures of green sulfur bacteria and sulfur-reducing bacteria". Archives of Microbiology. 157 (4): 343–348. doi:10.1007/BF00248679. ISSN 1432-072X. S2CID 25411079.
- Tonolla M, Demarta A, Peduzzi S, Hahn D, Peduzzi R (February 2000). "In situ analysis of sulfate-reducing bacteria related to Desulfocapsa thiozymogenes in the chemocline of meromictic Lake Cadagno (Switzerland)". Applied and Environmental Microbiology. 66 (2): 820–4. doi:10.1128/AEM.66.2.820-824.2000. PMC 91902. PMID 10653757.
- "Purple bacteria 'batteries' turn sewage into clean energy". Science Daily. November 13, 2018. Retrieved November 14, 2018.
- Ioanna A. Vasiliadou et al. (13 November 2018). "Biological and Bioelectrochemical Systems for Hydrogen Production and Carbon Fixation Using Purple Phototrophic Bacteria". Frontiers in Energy Research. 6. doi:10.3389/fenrg.2018.00107.CS1 maint: uses authors parameter (link)
- Bui ET, Bradley PJ, Johnson PJ (September 1996). "A common evolutionary origin for mitochondria and hydrogenosomes". Proceedings of the National Academy of Sciences of the United States of America. 93 (18): 9651–6. Bibcode:1996PNAS...93.9651B. doi:10.1073/pnas.93.18.9651. PMC 38483. PMID 8790385.