User:Ppgardne/Hfq binding sRNA
A Hfq binding sRNA is a sRNA that binds the bacterial RNA binding protein called Hfq. A number of bacterial small RNAs which have been shown to bind to Hfq have been characterised (see table). Many of these RNAs share a similar structure composed of three stem-loops. [1] Recent studies have expanded this list and experimentally validated a total of 64 Hfq binding sRNA in S. typhimurium.[2] [3][4]
| Bacterial Hfq binding sRNAs | |
|---|---|
| Family | Family |
| RydC RNA | Qrr RNA |
| OxyS RNA | Spot 42 RNA |
| RyeB RNA | CyaR RNA |
| RyhB RNA | DicF RNA |
| GcvB RNA | MicF RNA |
| MicC RNA | RprA RNA |
| DsrA RNA | MicA RNA / SraD RNA |
| SraE RNA / OmrB RNA / RygB RNA | SraJ RNA |
| SraH RNA | GadY RNA |
| SgrS RNA | SroC RNA |
| RybB RNA | RybB |
| RyeF | MicA |
| OmrA RNA / RygA RNA | |
References
[edit]- ^ Zhang A, Wassarman KM, Rosenow C, Tjaden BC, Storz G, Gottesman S (2003). "Global analysis of small RNA and mRNA targets of Hfq". Mol. Microbiol. 50 (4): 1111–24. doi:10.1046/j.1365-2958.2003.03734.x. PMID 14622403.
{{cite journal}}: CS1 maint: multiple names: authors list (link) - ^ Pfeiffer V, Sittka A, Tomer R, Tedin K, Brinkmann V, Vogel J (December 2007). "A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome". Molecular Microbiology. 66 (5): 1174–91. doi:10.1111/j.1365-2958.2007.05991.x. PMID 17971080.
{{cite journal}}: CS1 maint: date and year (link) CS1 maint: multiple names: authors list (link) - ^ Sittka A, Lucchini S, Papenfort K; et al. (2008). "Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq". PLOS Genetics. 4 (8): e1000163. doi:10.1371/journal.pgen.1000163. PMC 2515195. PMID 18725932.
{{cite journal}}: Explicit use of et al. in:|author=(help)CS1 maint: multiple names: authors list (link) CS1 maint: unflagged free DOI (link) - ^ Padalon-Brauch G, Hershberg R, Elgrably-Weiss M; et al. (April 2008). "Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence". Nucleic Acids Research. 36 (6): 1913–27. doi:10.1093/nar/gkn050. PMC 2330248. PMID 18267966.
{{cite journal}}: Explicit use of et al. in:|author=(help)CS1 maint: date and year (link) CS1 maint: multiple names: authors list (link)
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