Chimpanzee–human last common ancestor
|Chimpanzee–human last common ancestor
Temporal range: 5.4–0Ma
The chimpanzee–human last common ancestor (CHLCA, CLCA, or C/H LCA) is the last species that the genera Homo and Pan (i.e. humans on one hand and bonobos and common chimpanzees on the other) share as a common ancestor. It is estimated to have lived during the late Miocene.
Speciation appears to have been unusually drawn-out, with an original divergence as much as , but with ongoing hybridization during several millions of years, with the final separation dating to as late as 5 to 6 million years ago.
The species to which the CHLCA belonged is sometimes given the taxonomic name Pan prior, based on a suggestion by Richard Wrangham (2001). Wrangham argued that the CHLCA was so similar to chimpanzee (Pan troglodytes), that it should be classified as a member of the Pan genus. No fossil has directly been identified as representing Pan prior to date. The fossil finds of Sahelanthropus are closest in age and expected morphology to the CHLCA.
In human genetic studies, the CHLCA is useful as an anchor point for calculating single-nucleotide polymorphism (SNP) rates in human populations where chimpanzees are used as an outgroup, as the extant species most genetically similar to Homo sapiens.
The earliest studies[year needed] of apes suggested the CHLCA may have been as old as 25 million years; however, protein studies in the 1970s suggested the CHLCA was less than 8 million years in age. Genetic methods based on orangutan–human and gibbon–human LCA times were then used to estimate a chimpanzee–human LCA of 5 to 7 million years.
|“||One no longer has the option of considering a fossil older than about eight million years as a hominid no matter what it looks like.||”|
—V. Sarich, Background for man
Some researchers tried to estimate the age of the CHLCA (TCHLCA) using biopolymer structures that differ slightly between closely related animals. Among these researchers, Allan C. Wilson and Vincent Sarich were pioneers in the development of the molecular clock for humans. Working on protein sequences they eventually (1971) determined that apes were closer to humans than some paleontologists perceived based on the fossil record.  Later,[year needed] Vincent Sarich concluded that the TCHLCA was no greater than 8 million years in age, with a favored range between 4 and 6 million years before present.
This paradigmatic age has stuck with molecular anthropology until the late 1990s. Since the 1990s, the estimate has again been pushed towards more-remote times, because studies have found evidence for a slowing of the molecular clock as apes evolved from a common monkey-like ancestor with monkeys and humans evolved from a common ape-like ancestor with non-human apes.
Since the 1990s, the estimation of the TCHLCA has become less certain, and there is genetic as well as paleontological support for increasing TCHLCA beyond the 5 to 7 million years range accepted during the 1970s and 1980s. An estimate of TCHLCA at 10 to 13 million years was proposed in 1998, and a range of 7 to 10 million years ago is assumed by White et a. (2009):
In effect, there is now no a priori reason to presume that human-chimpanzee split times are especially recent, and the fossil evidence is now fully compatible with older chimpanzee–human divergence dates [7 to 10 Ma...—White et al. (2009), 
A source of confusion in determining the exact age of the Pan–Homo split is evidence of a more complex speciation process rather than a clean split between the two lineages. Different chromosomes appear to have split at different times, possibly over as much as a 4-million-year period, indicating a long and drawn out speciation process with large-scale hybridization events between the two emerging lineages as late as 6.3 to 5.4 million years ago according to Patterson et al. (2006). The assumption of late hybridization was in particular based on the similarity of the X chromosome in humans and chimpanzees, suggesting a divergence as late as some 4 million years ago. This conclusion was rejected as unwarranted by Wakeley (2008), who suggested alternative explanations, including selection pressure on the X chromosome in the populations ancestral to the CHLCA.
Complex speciation and incomplete lineage sorting of genetic sequences seem to also have happened in the split between the human lineage and that of the gorilla, indicating "messy" speciation is the rule rather than the exception in large primates. Such a scenario would explain why the divergence age between the Homo and Pan has varied with the chosen method and why a single point has so far been hard to track down.
The species to which the CHLCA belonged is sometimes given the taxonomic name Pan prior, based on a suggestion by Richard Wrangham (2001). Wrangham argued that the CHLCA was so similar to chimpanzees (Pan troglodytes), that it should be classified as a member of the Pan genus. No fossil has been directly identified as representing Pan prior to date. The fossil finds of Sahelanthropus are closest in age and expected morphology to the CHLCA, suggesting an age older than 7 million years, whereas the period of ongoing hybridization may include the temporal ranges of Orrorin and Ardipithecus.
The descendants of the CHLCA are the Hominini, defined as the descendants of the CHLCA to the inclusion of the genus Homo and exclusion of the genus Pan, i.e. representing "the human clade", and the Panini, the "chimpanzee clade". The taxon Hominini was proposed on the basis of the idea that the least similar species of a trichotomy should be separated from the other two. Some earlier classification schemes include the genus Pan (chimpanzees) within the Hominini, but this classification is now rarely followed. Sahelanthropus tchadensis is an extinct hominid species that lived 7 million years ago, very close to the time of the chimpanzee–human divergence; it is hence unclear whether it should be considered a member of the Hominini tribe, or as a member of CHLCA.
Few fossil specimens on the Pan side of the split have been found, the first fossil chimpanzee discovery being published in 2005, dating to between 545 ± 3 kyr (thousand years) and 284 ± 12 kyr via argon–argon dating, from Kenya's East African Rift Valley. All of the extinct genera listed in the table to the right are ancestral to Homo, or are offshoots of such. However, both Orrorin and Sahelanthropus existed around the time of the split, and so may be ancestral to all three extant species.
In the proposal of Mann and Weiss (1996), the tribe Hominini includes Pan as well as Homo, but within separate subtribes. Homo (and, by inference, all bipedal apes) is in the subtribe Hominina, while Pan is in the subtribe Panina. Wood (2010) discusses the different views of this taxonomy.
- Patterson N, Richter DJ, Gnerre S, Lander ES, Reich D (June 2006). "Genetic evidence for complex speciation of humans and chimpanzees". Nature 441 (7097): 1103–8. doi:10.1038/nature04789. PMID 16710306.
- "Out of the Pan, Into the Fire" in: Frans B. M. De Waal, ed. (2001). Tree of Origin: What Primate Behavior Can Tell Us About Human Social Evolution. pp. 124–126. ISBN 9780674010048.
- Background for man: readings in physical anthropology, 1971
- "If man and old world monkeys last shared a common ancestor 30 million years ago, then man and African apes shared a common ancestor 5 million years ago..." Sarich & Wilson (1971)
- Venn, Oliver; Turner, Isaac; Mathieson, Iain; de Groot, Natasja; Bontrop, Ronald; McVean, Gil (June 2014). "Strong male bias drives germline mutation in chimpanzees". Science 33 (6189): 1272–1275. doi:10.1126/science.344.6189.1272.
- Based on a revision of the divergence of Hominoidea from Cercopithecoidea at more than 50 Mya (previously set at 30 Mya). "Consistent with the marked shift in the dating of the Cercopithecoidea/Hominoidea split, all hominoid divergences receive a much earlier dating. Thus the estimated date of the divergence between Pan (chimpanzee) and Homo is 10–13 MYBP and that between Gorilla and the Pan/Homo linage ≈17 MYBP." Arnason U, Gullberg A, Janke A (December 1998). "Molecular timing of primate divergences as estimated by two nonprimate calibration points". J. Mol. Evol. 47 (6): 718–27. doi:10.1007/PL00006431. PMID 9847414.
- White TD, Asfaw B, Beyene Y et al. (October 2009). "Ardipithecus ramidus and the paleobiology of early hominids". Science 326 (5949): 75–86. doi:10.1126/science.1175802. PMID 19810190.
- Wakeley J (March 2008). "Complex speciation of humans and chimpanzees". Nature 452 (7184): E3–4; discussion E4. doi:10.1038/nature06805. PMID 18337768. "Patterson et al. suggest that the apparently short divergence time between humans and chimpanzees on the X chromosome is explained by a massive interspecific hybridization event in the ancestry of these two species. However, Patterson et al. do not statistically test their own null model of simple speciation before concluding that speciation was complex, and—even if the null model could be rejected—they do not consider other explanations of a short divergence time on the X chromosome. These include natural selection on the X chromosome in the common ancestor of humans and chimpanzees, changes in the ratio of male-to-female mutation rates over time, and less extreme versions of divergence with gene flow. I therefore believe that their claim of hybridization is unwarranted."
- Scally A, Dutheil JY, Hillier LW et al. (March 2012). "Insights into hominid evolution from the gorilla genome sequence". Nature 483 (7388): 169–75. doi:10.1038/nature10842. PMC 3303130. PMID 22398555.
- Van Arsdale, A.P. "Go, go, Gorilla genome". The Pleistocene Scene – A.P. Van Arsdale Blog. Retrieved 16 November 2012.
- Bradley, B. J. (2006). "Reconstructing Phylogenies and Phenotypes: A Molecular View of Human Evolution". Journal of Anatomy 212 (4): 337–353. doi:10.1111/j.1469-7580.2007.00840.x. PMC 2409108. PMID 18380860.
- Wood and Richmond.; Richmond, BG (2000). "Human evolution: taxonomy and paleobiology". Journal of Anatomy 197 (Pt 1): 19–60. doi:10.1046/j.1469-7580.2000.19710019.x. PMC 1468107. PMID 10999270.
- McBrearty, Sally and Nina G. Jablonski (2005). "First fossil chimpanzee". Nature 437 (7055): 105–108. Bibcode:2005Natur.437..105M. doi:10.1038/nature04008. PMID 16136135.
- Mann, Alan and Mark Weiss (1996). "Hominoid Phylogeny and Taxonomy: a consideration of the molecular and Fossil Evidence in an Historical Perspective". Molecular Phylogenetics and Evolution 5 (1): 169–181. doi:10.1006/mpev.1996.0011. PMID 8673284.
- B. Wood (2010). "Reconstructing human evolution: Achievements, challenges, and opportunities". Proceedings of the National Academy of Sciences 107: 8902–8909. Bibcode:2010PNAS..107.8902W. doi:10.1073/pnas.1001649107.
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