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Template:Phylogeny/APG IV/doc

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This template produces phylogenetic trees based on the Angiosperm Phylogeny Group IV (APG IV).[1] The whole system can be output as a large cladogram or sections can be selected for partial transclusion.

Partial transclusion is available for Magnolids, Monocots, Commelinids, Eudicots, Superrosids, Malvids, Fabids, Superasterids, Campulids, and Lamiids.

Full phylogenetic tree for APG IV system

[edit]

To output the full system, use a plain transclusion of the template. The code

{{Phylogeny/APG IV}}

produces:

Angiosperms

Amborellales Melikyan, Bobrov & Zaytzeva 1999

Nymphaeales Salisbury ex von Berchtold & Presl 1820

Austrobaileyales Takhtajan ex Reveal 1992

Mesangiosperms

Chloranthales Mart. 1835

Magnoliids

Canellales Cronquist 1957

Piperales von Berchtold & Presl 1820

Magnoliales de Jussieu ex von Berchtold & Presl 1820

Laurales de Jussieu ex von Berchtold & Presl 1820

Monocots

Acorales Link 1835

Alismatales Brown ex von Berchtold & Presl 1820

Petrosaviales Takhtajan 1997

Dioscoreales Brown 1835

Pandanales Brown ex von Berchtold & Presl 1820

Liliales Perleb 1826

Asparagales Link 1829

Commelinids

Arecales Bromhead 1840

Poales Small 1903

Zingiberales Grisebach 1854

Commelinales de Mirbel ex von Berchtold & Presl 1820

Ceratophyllales Link 1829

Eudicots

Ranunculales de Jussieu ex von Berchtold & Presl 1820

Proteales de Jussieu ex von Berchtold & Presl 1820

Trochodendrales Takhtajan ex Cronquist 1981

Buxales Takhtajan ex Reveal 1996

core

Gunnerales Takhtajan ex Reveal 1992

Dilleniales de Candolle ex von Berchtold & Presl 1820

Superrosids

Saxifragales von Berchtold & Presl 1820

Rosids

Vitales de Jussieu ex von Berchtold & Presl 1820

Fabids

Zygophyllales Link 1829

Celastrales Link 1829

Oxalidales von Berchtold & Presl 1820

Malpighiales de Jussieu ex von Berchtold & Presl 1820

Fabales Bromhead 1838

Rosales von Berchtold & Presl 1820

Cucurbitales de Jussieu ex von Berchtold & Presl 1820

Fagales Engler 1892

(eurosids I)
Malvids

Geraniales de Jussieu ex von Berchtold & Presl 1820

Myrtales de Jussieu ex von Berchtold & Presl 1820

Crossosomatales Takhtajan ex Reveal 1993

Picramniales Doweld 2001

Sapindales de Jussieu ex von Berchtold & Presl 1820

Huerteales Doweld 2001

Malvales de Jussieu ex von Berchtold & Presl 1820

Brassicales Bromhead 1838

(eurosids II)
Superasterids

Berberidopsidales Doweld 2001

Santalales Brown ex von Berchtold & Presl 1820

Caryophyllales

Asterids

Cornales Link 1829

Ericales von Berchtold & Presl 1820

Lamiids

Icacinales Van Tieghem 1900

Metteniusales Takhtajan 1997

Garryales Mart. 1835

Gentianales de Jussieu ex von Berchtold & Presl 1820

Solanales de Jussieu ex von Berchtold & Presl 1820

Boraginales de Jussieu ex von Berchtold & Presl 1820

Vahliales Doweld 2001

Lamiales Bromhead 1838

(euasterids I)
Campanulids

Aquifoliales Senft 1856

Escalloniales Mart. 1835

Asterales Link 1829

Bruniales Dumortier 1829

Apiales Nakai 1930

Paracryphiales Takhtajan ex Reveal 1992

Dipsacales de Jussieu ex von Berchtold & Presl 1820

(euasterids II)
eudicots

The same result can be achieved with:

{{Phylogeny/APG IV|Angiosperms}}

or

{{Clade transclude|page=Template:Phylogeny/APG IV|Angiosperms}}

Partial transclusion

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Partial transclusion using named sections

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Sections from the whole tree can be transcluded separately. For example, the following code extracts the monocot tree. The sections are marked in the template using <section begin=SECTION_NAME /> and <section end=SECTION_NAME />. In this example the SECTION_NAME is Monocots. The |wrap= causes the transcluded section to be wrapped with an outer clade element labelled with the section name (by default) or the value assigned to the parameter.

{{Phylogeny/APG IV|section=Monocots |wrap=}}
Monocots

Acorales Link 1835

Alismatales Brown ex von Berchtold & Presl 1820

Petrosaviales Takhtajan 1997

Dioscoreales Brown 1835

Pandanales Brown ex von Berchtold & Presl 1820

Liliales Perleb 1826

Asparagales Link 1829

Commelinids

Arecales Bromhead 1840

Poales Small 1903

Zingiberales Grisebach 1854

Commelinales de Mirbel ex von Berchtold & Presl 1820


Sections available

[edit]

The following sections are currently available:

  • Angiosperms (full APG IV system)
    • Magnoliids
    • Monocots
      • Commelinids
    • Eudicots
      • Superrosids
        • Malvids
        • Fabids
      • Superasterids
        • Campulids
        • Lamiids

Partial transclusion using clade label parameters

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Selective transclusion can also use the |label= parameters in the {{clade}} template. This method can be used with any clade with a label with no special encoding (sections or subtrees).

{{Phylogeny/APG IV|label=Commelinids|wrap=}}
Commelinids

Arecales Bromhead 1840

Poales Small 1903

Zingiberales Grisebach 1854

Commelinales de Mirbel ex von Berchtold & Presl 1820

{{Phylogeny/APG IV|label=Rosids}}
Rosids

Vitales de Jussieu ex von Berchtold & Presl 1820

Fabids

Zygophyllales Link 1829

Celastrales Link 1829

Oxalidales von Berchtold & Presl 1820

Malpighiales de Jussieu ex von Berchtold & Presl 1820

Fabales Bromhead 1838

Rosales von Berchtold & Presl 1820

Cucurbitales de Jussieu ex von Berchtold & Presl 1820

Fagales Engler 1892

(eurosids I)
Malvids

Geraniales de Jussieu ex von Berchtold & Presl 1820

Myrtales de Jussieu ex von Berchtold & Presl 1820

Crossosomatales Takhtajan ex Reveal 1993

Picramniales Doweld 2001

Sapindales de Jussieu ex von Berchtold & Presl 1820

Huerteales Doweld 2001

Malvales de Jussieu ex von Berchtold & Presl 1820

Brassicales Bromhead 1838

(eurosids II)

Note that the rosids tree includes the Fabids and Malvids, even though they are encoded using the subtrees FABIDS and MALVIDS.

Partial transclusion using clade subtrees

[edit]

The subtrees attached to |subtreeX= can also be transcluded separately. This relies on the convention that subtrees have an uppercase target.

{{Phylogeny/APG IV|subtree=MALVIDS}}

Geraniales de Jussieu ex von Berchtold & Presl 1820

Myrtales de Jussieu ex von Berchtold & Presl 1820

Crossosomatales Takhtajan ex Reveal 1993

Picramniales Doweld 2001

Sapindales de Jussieu ex von Berchtold & Presl 1820

Huerteales Doweld 2001

Malvales de Jussieu ex von Berchtold & Presl 1820

Brassicales Bromhead 1838

Note that this just retrieves the clade containing the malvids, without a labelled root. The following example uses |wrap= to wrap the recovered subtree within a clade with a label.

{{Phylogeny/APG IV|subtree=EUDICOTS|wrap=}}
Eudicots

Ranunculales de Jussieu ex von Berchtold & Presl 1820

Proteales de Jussieu ex von Berchtold & Presl 1820

Trochodendrales Takhtajan ex Cronquist 1981

Buxales Takhtajan ex Reveal 1996

core

Gunnerales Takhtajan ex Reveal 1992

Dilleniales de Candolle ex von Berchtold & Presl 1820

Superrosids

Saxifragales von Berchtold & Presl 1820

Rosids

Vitales de Jussieu ex von Berchtold & Presl 1820

Fabids

Zygophyllales Link 1829

Celastrales Link 1829

Oxalidales von Berchtold & Presl 1820

Malpighiales de Jussieu ex von Berchtold & Presl 1820

Fabales Bromhead 1838

Rosales von Berchtold & Presl 1820

Cucurbitales de Jussieu ex von Berchtold & Presl 1820

Fagales Engler 1892

(eurosids I)
Malvids

Geraniales de Jussieu ex von Berchtold & Presl 1820

Myrtales de Jussieu ex von Berchtold & Presl 1820

Crossosomatales Takhtajan ex Reveal 1993

Picramniales Doweld 2001

Sapindales de Jussieu ex von Berchtold & Presl 1820

Huerteales Doweld 2001

Malvales de Jussieu ex von Berchtold & Presl 1820

Brassicales Bromhead 1838

(eurosids II)
Superasterids

Berberidopsidales Doweld 2001

Santalales Brown ex von Berchtold & Presl 1820

Caryophyllales

Asterids

Cornales Link 1829

Ericales von Berchtold & Presl 1820

Lamiids

Icacinales Van Tieghem 1900

Metteniusales Takhtajan 1997

Garryales Mart. 1835

Gentianales de Jussieu ex von Berchtold & Presl 1820

Solanales de Jussieu ex von Berchtold & Presl 1820

Boraginales de Jussieu ex von Berchtold & Presl 1820

Vahliales Doweld 2001

Lamiales Bromhead 1838

(euasterids I)
Campanulids

Aquifoliales Senft 1856

Escalloniales Mart. 1835

Asterales Link 1829

Bruniales Dumortier 1829

Apiales Nakai 1930

Paracryphiales Takhtajan ex Reveal 1992

Dipsacales de Jussieu ex von Berchtold & Presl 1820

(euasterids II)
eudicots

Partial tranclusion with pruning

[edit]

Using label

[edit]

The following example extracts the rosid clade using the |label= parameter and then prunes the malvid clade using the |exclude= and substitutes with the content in the |replace= parameter.

{{Phylogeny/APG IV|label=Rosids|wrap=
                       |exclude=Malvids  |replace=Malvid clade pruned }}
Rosids

Vitales de Jussieu ex von Berchtold & Presl 1820

Fabids

Zygophyllales Link 1829

Celastrales Link 1829

Oxalidales von Berchtold & Presl 1820

Malpighiales de Jussieu ex von Berchtold & Presl 1820

Fabales Bromhead 1838

Rosales von Berchtold & Presl 1820

Cucurbitales de Jussieu ex von Berchtold & Presl 1820

Fagales Engler 1892

(eurosids I)
Malvids

Malvid clade pruned

(eurosids II)

Using subtree

[edit]

The following example extracts the eudicot clade using the |subtree= parameter and then prunes the superrosid and superasterid clades using the |exclude= parameters and substitutes with the content in the |replace= parameters.

{{Phylogeny/APG IV|subtree=EUDICOTS|wrap=
                  |exclude1=SUPERROSIDS   |replace1=Superrosid clade pruned
                  |exclude2=SUPERASTERIDS |replace2=Superasterid clade pruned }}
Eudicots

Ranunculales de Jussieu ex von Berchtold & Presl 1820

Proteales de Jussieu ex von Berchtold & Presl 1820

Trochodendrales Takhtajan ex Cronquist 1981

Buxales Takhtajan ex Reveal 1996

core

Gunnerales Takhtajan ex Reveal 1992

Dilleniales de Candolle ex von Berchtold & Presl 1820

Superrosids

Superrosid clade pruned

Superasterids

Superasterid clade pruned

eudicots

Using mixed labels and subtree

[edit]

The following example extracts the eudicot clade using the |subtree= parameter and then prunes the rosid and lamiid clades using the |exclude= parameters and substitutes with the content in the |replace= parameters.

{{Phylogeny/APG IV|subtree=EUDICOTS|wrap=
                  |exclude1=Rosids  |replace1=Rosid clade pruned
                  |exclude2=LAMIIDS |replace2=Lamiid clade pruned }}
Eudicots

Ranunculales de Jussieu ex von Berchtold & Presl 1820

Proteales de Jussieu ex von Berchtold & Presl 1820

Trochodendrales Takhtajan ex Cronquist 1981

Buxales Takhtajan ex Reveal 1996

core

Gunnerales Takhtajan ex Reveal 1992

Dilleniales de Candolle ex von Berchtold & Presl 1820

Superrosids

Saxifragales von Berchtold & Presl 1820

Rosids

Rosid clade pruned

Superasterids

Berberidopsidales Doweld 2001

Santalales Brown ex von Berchtold & Presl 1820

Caryophyllales

Asterids

Cornales Link 1829

Ericales von Berchtold & Presl 1820

Lamiids

Lamiid clade pruned

(euasterids I)
Campanulids

Aquifoliales Senft 1856

Escalloniales Mart. 1835

Asterales Link 1829

Bruniales Dumortier 1829

Apiales Nakai 1930

Paracryphiales Takhtajan ex Reveal 1992

Dipsacales de Jussieu ex von Berchtold & Presl 1820

(euasterids II)
eudicots

The final example extracts the whole angiosperm tree and prunes the magnoliid, monocot and eudicot clades to show the basal groups and main clades.

{{Phylogeny/APG IV|subtree=Angiosperms|wrap=
                  |exclude1=Magnoliids |replace1=MAGNOLIIDS
                  |exclude2=Monocots   |replace2=MONOCOTS 
                  |exclude3=Eudicots   |replace3=EUDICOTS }}
Angiosperms

Amborellales Melikyan, Bobrov & Zaytzeva 1999

Nymphaeales Salisbury ex von Berchtold & Presl 1820

Austrobaileyales Takhtajan ex Reveal 1992

Mesangiosperms

Chloranthales Mart. 1835

Magnoliids

MAGNOLIIDS

Monocots

MONOCOTS

Ceratophyllales Link 1829

Eudicots

EUDICOTS

References

[edit]
  1. ^ Angiosperm Phylogeny Group (2016). "An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV". Botanical Journal of the Linnean Society. 181 (1): 1–20. doi:10.1111/boj.12385.