List of sequenced bacterial genomes: Difference between revisions

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Line 23: Line 23:
|3,598,621
|3,598,621
|3,325
|3,325
|<ref>{{cite journal | journal=Nucleic Acids Res | volume=32 | pages=5766-79 | date=2004 | author=Barbe V et al. | title=Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium | url=http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=15514110 | pmid=15514110 | doi = 10.1093/nar/gkh910 }}</ref>
|<ref>Nucleic Acids Res. 2004 Oct 28, 32(19):5766-79. Print 2004</ref>
|-
|-
|Agrobacterium tumefaciens
|Agrobacterium tumefaciens
Line 30: Line 30:
|2,841,581
|2,841,581
|2,722
|2,722
|<ref>{{cite journal | journal=Science | volume=294 | pages=2323-8 | date=2001 | author=Goodner B et al. | title=Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58 | url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=11743194 | pmid=11743194 | doi = 10.1126/science.1066803 }}</ref>
|<ref>Science. 2001 Dec 14, 294(5550):2323-8</ref>
|-
|-
|Anabaena nostoc
|Anabaena nostoc
Line 58: Line 58:
|1,197,687
|1,197,687
|949
|949
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=102 | pages=844-9 | date=2005 | author=Brayton KA et al. | title=Complete genome sequencing of Anaplasma marginale reveals that the surface is skewed to two superfamilies of outer membrane proteins | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15618402 | pmid=15618402 | doi = 10.1073/pnas.0406656102 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2005 Jan 18, 102(3):844-9. Epub 2004 Dec 23</ref>
|-
|-
|Anaplasma phagocytophilum
|Anaplasma phagocytophilum
Line 65: Line 65:
|1,471,282
|1,471,282
|1,264
|1,264
|<ref>{{cite journal | journal=PLoS Genet | volume=2 | pages= | date=2006 | author=Hotopp JC et al. | title=Comparative genomics of emerging human ehrlichiosis agents | url=http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=16482227 | pmid=16482227 | doi = }}</ref>
|<ref>PLoS Genet. 2006 Feb 17, 2(2):e21</ref>
|-
|-
|Aquifex aeolicus
|Aquifex aeolicus
Line 72: Line 72:
|1,551,335
|1,551,335
|1,522
|1,522
|<ref>{{cite journal | journal=Nature | volume=392 | pages=353-8 | date=1998 | author=Deckert G et al. | title=The complete genome of the hyperthermophilic bacterium Aquifex aeolicus | url=http://dx.doi.org/10.1038/32831 | pmid=9537320 | doi = 10.1038/32831 }}</ref>
|<ref>Nature. 1998 Mar 26, 392(6674):353-8</ref>
|-
|-
|Azoarcusspecies
|Azoarcusspecies
Line 79: Line 79:
|4,296,230
|4,296,230
|4,128
|4,128
|<ref>{{cite journal | journal=Arch Microbiol | volume=178 | pages=506-16 | date=2002 | author=Rabus R et al. | title=Genes involved in the anaerobic degradation of ethylbenzene in a denitrifying bacterium, strain EbN1 | url=http://dx.doi.org/10.1007/s00203-002-0487-2 | pmid=12420173 | doi = 10.1007/s00203-002-0487-2 }}</ref>
|<ref>Arch Microbiol. 2002 Dec, 178(6):506-16. Epub 2002 Oct 3</ref>
|-
|-
|[[Bacillus anthracis]]
|[[Bacillus anthracis]]
Line 86: Line 86:
|5,227,293
|5,227,293
|5,311
|5,311
|<ref>{{cite journal | journal=Nature | volume=423 | pages=81-6 | date=2003 | author=Read TD et al. | title=The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria | url=http://dx.doi.org/10.1038/nature01586 | pmid=12721629 | doi = 10.1038/nature01586 }}</ref>
|<ref>Nature. 2003 May 1, 423(6935):81-6</ref>
|-
|-
|Bacillus anthracis
|Bacillus anthracis
Line 100: Line 100:
|5,224,283
|5,224,283
|5,603
|5,603
|<ref>{{cite journal | journal=Nucleic Acids Res | volume=32 | pages=977-88 | date=2004 | author=Rasko DA et al. | title=The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1 | url=http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=14960714 | pmid=14960714 | doi = 10.1093/nar/gkh258 }}</ref>
|<ref>Nucleic Acids Res. 2004 Feb 11, 32(3):977-88. Print 2004</ref>
|-
|-
|Bacillus cereus
|Bacillus cereus
Line 107: Line 107:
|5,411,809
|5,411,809
|5,234
|5,234
|<ref>{{cite journal | journal=Nature | volume=423 | pages=87-91 | date=2003 | author=Ivanova N et al. | title=Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis | url=http://dx.doi.org/10.1038/nature01582 | pmid=12721630 | doi = 10.1038/nature01582 }}</ref>
|<ref>Nature. 2003 May 1, 423(6935):87-91</ref>
|-
|-
|Bacillus cereus
|Bacillus cereus
Line 121: Line 121:
|4,303,871
|4,303,871
|4,108
|4,108
|<ref>{{cite journal | journal=Appl Microbiol Biotechnol | volume=43 | pages=473-81 | date=1995 | author=Kobayashi T et al. | title=Purification and properties of an alkaline protease from alkalophilic Bacillus sp. KSM-K16 | url=http://link.springer.de/link/service/journals/00253/bibs/5043003/50430473.htm | pmid=7632397 | doi = 10.1007/BF00218452 }}</ref>
|<ref>Appl Microbiol Biotechnol. 1995 Jul, 43(3):473-81</ref>
|-
|-
|Bacillus halodurans
|Bacillus halodurans
Line 128: Line 128:
|4,202,352
|4,202,352
|4,066
|4,066
|<ref>{{cite journal | journal=Extremophiles | volume=3 | pages=21-8 | date=1999 | author=Takami H et al. | title=An improved physical and genetic map of the genome of alkaliphilic Bacillus sp. C-125 | url= | pmid=10086841 | doi = 10.1007/s007920050095 }}</ref>
|<ref>Extremophiles. 1999 Jan, 3(1):21-8</ref>
|-
|-
|Bacillus licheniformis
|Bacillus licheniformis
Line 135: Line 135:
|4,222,334
|4,222,334
|4,152
|4,152
|<ref>{{cite journal | journal=Genome Biol | volume=5 | pages=R77 | date=2004 | author=Rey MW et al. | title=Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species | url=http://genomebiology.com/1465-6906/5/R77 | pmid=15461803 | doi = 10.1186/gb-2004-5-10-r77 }}</ref>
|<ref>Genome Biol. 2004, 5(10):R77. Epub 2004 Sep 13</ref>
|-
|-
|Bacillus licheniformis
|Bacillus licheniformis
Line 142: Line 142:
|4,222,645
|4,222,645
|4,196
|4,196
|<ref>{{cite journal | journal=J Mol Microbiol Biotechnol | volume=7 | pages=204-11 | date=2004 | author=Veith B et al. | title=The complete genome sequence of Bacillus licheniformis DSM13, an organism with great industrial potential | url=http://content.karger.com/produktedb/produkte.asp?doi=10.1159/000079829&typ=pdf | pmid=15383718 | doi = 10.1159/000079829 }}</ref>
|<ref>J Mol Microbiol Biotechnol. 2004, 7(4):204-11</ref>
|-
|-
|Bacillus licheniformis
|Bacillus licheniformis
Line 149: Line 149:
|4,222,645
|4,222,645
|4,196
|4,196
|<ref>{{cite journal | journal=J Mol Microbiol Biotechnol | volume=7 | pages=204-11 | date=2004 | author=Veith B et al. | title=The complete genome sequence of Bacillus licheniformis DSM13, an organism with great industrial potential | url=http://content.karger.com/produktedb/produkte.asp?doi=10.1159/000079829&typ=pdf | pmid=15383718 | doi = 10.1159/000079829 }}</ref>
|<ref>J Mol Microbiol Biotechnol. 2004, 7(4):204-11</ref>
|-
|-
|[[Bacillus subtilis]]
|[[Bacillus subtilis]]
Line 156: Line 156:
|4,214,630
|4,214,630
|4,106
|4,106
|<ref>{{cite journal | journal=Nature | volume=390 | pages=249-56 | date=1997 | author=Kunst F et al. | title=The complete genome sequence of the gram-positive bacterium Bacillus subtilis | url=http://dx.doi.org/10.1038/36786 | pmid=9384377 | doi = 10.1038/36786 }}</ref>
|<ref>Nature. 1997 Nov 20, 390(6657):249-56</ref>
|-
|-
|[[Bacillus thuringiensis]]
|[[Bacillus thuringiensis]]
Line 170: Line 170:
|5,205,140
|5,205,140
|4,260
|4,260
|<ref>{{cite journal | journal=Science | volume=307 | pages=1463-5 | date=2005 | author=Cerdeño-Tárraga AM et al. | title=Extensive DNA inversions in the B. fragilis genome control variable gene expression | url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=15746427 | pmid=15746427 | doi = 10.1126/science.1107008 }}</ref>
|<ref>Science. 2005 Mar 4, 307(5714):1463-5</ref>
|-
|-
|Bacteroides fragilis
|Bacteroides fragilis
Line 184: Line 184:
|6,260,361
|6,260,361
|4,778
|4,778
|<ref>{{cite journal | journal=Science | volume=299 | pages=2074-6 | date=2003 | author=Xu J et al. | title=A genomic view of the human-Bacteroides thetaiotaomicron symbiosis | url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=12663928 | pmid=12663928 | doi = 10.1126/science.1080029 }}</ref>
|<ref>Science. 2003 Mar 28, 299(5615):2074-6</ref>
|-
|-
|Bartonella henselae
|Bartonella henselae
Line 191: Line 191:
|1,931,047
|1,931,047
|1,612
|1,612
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=101 | pages=9716-21 | date=2004 | author=Alsmark CM et al. | title=The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15210978 | pmid=15210978 | doi = 10.1073/pnas.0305659101 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2004 Jun 29, 101(26):9716-21. Epub 2004 Jun 21</ref>
|-
|-
|Bartonella quintana
|Bartonella quintana
Line 198: Line 198:
|1,581,384
|1,581,384
|1,308
|1,308
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=101 | pages=9716-21 | date=2004 | author=Alsmark CM et al. | title=The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15210978 | pmid=15210978 | doi = 10.1073/pnas.0305659101 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2004 Jun 29, 101(26):9716-21. Epub 2004 Jun 21</ref>
|-
|-
|Baumannia cicadellinicola
|Baumannia cicadellinicola
Line 212: Line 212:
|3,782,950
|3,782,950
|3,583
|3,583
|<ref>{{cite journal | journal=Science | volume=303 | pages=689-92 | date=2004 | author=Rendulic S et al. | title=A predator unmasked: life cycle of Bdellovibrio bacteriovorus from a genomic perspective | url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=14752164 | pmid=14752164 | doi = 10.1126/science.1093027 }}</ref>
|<ref>Science. 2004 Jan 30, 303(5658):689-92</ref>
|-
|-
|Bifidobacterium longum
|Bifidobacterium longum
Line 219: Line 219:
|2,256,640
|2,256,640
|1,727
|1,727
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=99 | pages=14422-7 | date=2002 | author=Schell MA et al. | title=The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12381787 | pmid=12381787 | doi = 10.1073/pnas.212527599 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2002 Oct 29, 99(22):14422-7. Epub 2002 Oct 15</ref>
|-
|-
|Blochmannia floridanus
|Blochmannia floridanus
Line 226: Line 226:
|705,557
|705,557
|589
|589
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=100 | pages=9388-93 | date=2003 | author=Gil R et al. | title=The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12886019 | pmid=12886019 | doi = 10.1073/pnas.1533499100 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2003 Aug 5, 100(16):9388-93. Epub 2003 Jul 28</ref>
|-
|-
|Blochmannia pennsylvanicus
|Blochmannia pennsylvanicus
Line 233: Line 233:
|791,654
|791,654
|610
|610
|<ref>{{cite journal | journal=Genome Res | volume=15 | pages=1023-33 | date=2005 | author=Degnan PH et al. | title=Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects | url=http://www.genome.org/cgi/pmidlookup?view=long&pmid=16077009 | pmid=16077009 | doi = 10.1101/gr.3771305 }}</ref>
|<ref>Genome Res. 2005 Aug, 15(8):1023-33</ref>
|-
|-
|[[Bordetella]] bronchiseptica
|[[Bordetella]] bronchiseptica
Line 261: Line 261:
|910,724
|910,724
|850
|850
|<ref>{{cite journal | journal=Nature | volume=390 | pages=580-6 | date=1997 | author=Fraser CM et al. | title=Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi | url=http://dx.doi.org/10.1038/37551 | pmid=9403685 | doi = 10.1038/37551 }}</ref>
|<ref>Nature. 1997 Dec 11, 390(6660):580-6</ref>
|-
|-
|Borrelia garinii
|Borrelia garinii
Line 268: Line 268:
|904,246
|904,246
|832
|832
|<ref>{{cite journal | journal=Nucleic Acids Res | volume=32 | pages=6038-46 | date=2004 | author=Glöckner G et al. | title=Comparative analysis of the Borrelia garinii genome | url=http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=15547252 | pmid=15547252 | doi = 10.1093/nar/gkh953 }}</ref>
|<ref>Nucleic Acids Res. 2004 Nov 16, 32(20):6038-46. Print 2004</ref>
|-
|-
|Bradyrhizobium japonicum
|Bradyrhizobium japonicum
Line 275: Line 275:
|9,105,828
|9,105,828
|8,317
|8,317
|<ref>{{cite journal | journal=DNA Res | volume=9 | pages=189-97 | date=2002 | author=Kaneko T et al. | title=Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110 | url=http://dnaresearch.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=12597275 | pmid=12597275 | doi = 10.1093/dnares/9.6.189 }}</ref>
|<ref>DNA Res. 2002 Dec 31, 9(6):189-97</ref>
|-
|-
|[[Brucella]] abortus
|[[Brucella]] abortus
Line 282: Line 282:
|2,124,241
|2,124,241
|2,030
|2,030
|<ref>{{cite journal | journal=J Bacteriol | volume=187 | pages=2715-26 | date=2005 | author=Halling SM et al. | title=Completion of the genome sequence of Brucella abortus and comparison to the highly similar genomes of Brucella melitensis and Brucella suis | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=15805518 | pmid=15805518 | doi = 10.1128/JB.187.8.2715-2726.2005 }}</ref>
|<ref>J Bacteriol. 2005 Apr, 187(8):2715-26</ref>
|-
|-
|Unspecified
|Unspecified
Line 289: Line 289:
|1,162,204
|1,162,204
|1,055
|1,055
|<ref>{{cite journal | journal=J Bacteriol | volume=187 | pages=2715-26 | date=2005 | author=Halling SM et al. | title=Completion of the genome sequence of Brucella abortus and comparison to the highly similar genomes of Brucella melitensis and Brucella suis | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=15805518 | pmid=15805518 | doi = 10.1128/JB.187.8.2715-2726.2005 }}</ref>
|<ref>J Bacteriol. 2005 Apr, 187(8):2715-26</ref>
|-
|-
|Brucella melitensis
|Brucella melitensis
Line 296: Line 296:
|2,117,144
|2,117,144
|2,059
|2,059
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=99 | pages=443-8 | date=2002 | author=DelVecchio VG et al. | title=The genome sequence of the facultative intracellular pathogen Brucella melitensis | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=11756688 | pmid=11756688 | doi = 10.1073/pnas.221575398 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2002 Jan 8, 99(1):443-8. Epub 2001 Dec 26</ref>
|-
|-
|Unspecified
|Unspecified
Line 303: Line 303:
|1,177,787
|1,177,787
|1,139
|1,139
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=99 | pages=443-8 | date=2002 | author=DelVecchio VG et al. | title=The genome sequence of the facultative intracellular pathogen Brucella melitensis | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=11756688 | pmid=11756688 | doi = 10.1073/pnas.221575398 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2002 Jan 8, 99(1):443-8. Epub 2001 Dec 26</ref>
|-
|-
|Brucella melitensis
|Brucella melitensis
Line 310: Line 310:
|1,156,948
|1,156,948
|1,164
|1,164
|<ref>{{cite journal | journal=Infect Immun | volume=73 | pages=8353-61 | date=2005 | author=Chain PS et al. | title=Whole-genome analyses of speciation events in pathogenic Brucellae | url=http://iai.asm.org/cgi/pmidlookup?view=long&pmid=16299333 | pmid=16299333 | doi = 10.1128/IAI.73.12.8353-8361.2005 }}</ref>
|<ref>Infect Immun. 2005 Dec, 73(12):8353-61</ref>
|-
|-
|Brucella melitensis
|Brucella melitensis
Line 317: Line 317:
|2,121,359
|2,121,359
|2,186
|2,186
|<ref>{{cite journal | journal=Infect Immun | volume=73 | pages=8353-61 | date=2005 | author=Chain PS et al. | title=Whole-genome analyses of speciation events in pathogenic Brucellae | url=http://iai.asm.org/cgi/pmidlookup?view=long&pmid=16299333 | pmid=16299333 | doi = 10.1128/IAI.73.12.8353-8361.2005 }}</ref>
|<ref>Infect Immun. 2005 Dec, 73(12):8353-61</ref>
|-
|-
|Brucella Suis
|Brucella Suis
Line 324: Line 324:
|2,107,794
|2,107,794
|2,123
|2,123
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=99 | pages=13148-53 | date=2002 | author=Paulsen IT et al. | title=The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12271122 | pmid=12271122 | doi = 10.1073/pnas.192319099 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2002 Oct 1, 99(20):13148-53. Epub 2002 Sep 23</ref>
|-
|-
|Unspecified
|Unspecified
Line 331: Line 331:
|1,207,381
|1,207,381
|1,150
|1,150
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=99 | pages=13148-53 | date=2002 | author=Paulsen IT et al. | title=The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12271122 | pmid=12271122 | doi = 10.1073/pnas.192319099 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2002 Oct 1, 99(20):13148-53. Epub 2002 Sep 23</ref>
|-
|-
|Buchnera aphidicola
|Buchnera aphidicola
Line 338: Line 338:
|640,681
|640,681
|564
|564
|<ref>{{cite journal | journal=Nature | volume=407 | pages=81-6 | date=2000 | author=Shigenobu S et al. | title=Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS | url=http://dx.doi.org/10.1038/35024074 | pmid=10993077 | doi = 10.1038/35024074 }}</ref>
|<ref>Nature. 2000 Sep 7, 407(6800):81-6</ref>
|-
|-
|Buchnera aphidicola
|Buchnera aphidicola
Line 345: Line 345:
|615,980
|615,980
|504
|504
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=100 | pages=581-6 | date=2003 | author=van Ham RC et al. | title=Reductive genome evolution in Buchnera aphidicola | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12522265 | pmid=12522265 | doi = 10.1073/pnas.0235981100 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2003 Jan 21, 100(2):581-6. Epub 2003 Jan 9</ref>
|-
|-
|Buchnera aphidicola
|Buchnera aphidicola
Line 352: Line 352:
|641,454
|641,454
|545
|545
|<ref>{{cite journal | journal=Science | volume=296 | pages=2376-9 | date=2002 | author=Tamas I et al. | title=50 million years of genomic stasis in endosymbiotic bacteria | url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=12089438 | pmid=12089438 | doi = 10.1126/science.1071278 }}</ref>
|<ref>Science. 2002 Jun 28, 296(5577):2376-9</ref>
|-
|-
|[[Burkholderia]] cenocepacia
|[[Burkholderia]] cenocepacia
Line 387: Line 387:
|2,325,379
|2,325,379
|2,029
|2,029
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=101 | pages=14246-51 | date=2004 | author=Nierman WC et al. | title=Structural flexibility in the Burkholderia mallei genome | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15377793 | pmid=15377793 | doi = 10.1073/pnas.0403306101 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2004 Sep 28, 101(39):14246-51. Epub 2004 Sep 17</ref>
|-
|-
|Burkholderia pseudomallei
|Burkholderia pseudomallei
Line 408: Line 408:
|4,074,542
|4,074,542
|3,460
|3,460
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=101 | pages=14240-5 | date=2004 | author=Holden MT et al. | title=Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15377794 | pmid=15377794 | doi = 10.1073/pnas.0403302101 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2004 Sep 28, 101(39):14240-5. Epub 2004 Sep 17</ref>
|-
|-
|Unspecified
|Unspecified
Line 415: Line 415:
|3,173,005
|3,173,005
|2,395
|2,395
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=101 | pages=14240-5 | date=2004 | author=Holden MT et al. | title=Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15377794 | pmid=15377794 | doi = 10.1073/pnas.0403302101 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2004 Sep 28, 101(39):14240-5. Epub 2004 Sep 17</ref>
|-
|-
|Burkholderia species
|Burkholderia species
Line 478: Line 478:
|1,641,481
|1,641,481
|1,643
|1,643
|<ref>{{cite journal | journal=Nature | volume=403 | pages=665-8 | date=2000 | author=Parkhill J et al. | title=The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences | url=http://dx.doi.org/10.1038/35001088 | pmid=10688204 | doi = 10.1038/35001088 }}</ref>
|<ref>Nature. 2000 Feb 10, 403(6770):665-8</ref>
|-
|-
|Campylobacter jejuni
|Campylobacter jejuni
Line 485: Line 485:
|1,777,831
|1,777,831
|1,838
|1,838
|<ref>{{cite journal | journal=PLoS Biol | volume=3 | pages= | date=2005 | author=Fouts DE et al. | title=Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species | url=http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=15660156 | pmid=15660156 | doi = }}</ref>
|<ref>PLoS Biol. 2005 Jan, 3(1):e15. Epub 2005 Jan 4</ref>
|-
|-
|Carboxydothermus hydrogenoformans
|Carboxydothermus hydrogenoformans
Line 499: Line 499:
|159,662
|159,662
|182
|182
|<ref>{{cite journal | journal=Science | volume=314 | pages=267 | date=2006 | author=Nakabachi A et al. | title=The 160-kilobase genome of the bacterial endosymbiont Carsonella | url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=17038615 | pmid=17038615 | doi = 10.1126/science.1134196 }}</ref>
|<ref>Science. 2006 Oct 13, 314(5797):267</ref>
|-
|-
|Caulobactercresentus
|Caulobactercresentus
Line 506: Line 506:
|4,016,947
|4,016,947
|3,737
|3,737
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=98 | pages=4136-41 | date=2001 | author=Nierman WC et al. | title=Complete genome sequence of Caulobacter crescentus | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=11259647 | pmid=11259647 | doi = 10.1073/pnas.061029298 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2001 Mar 27, 98(7):4136-41. Epub 2001 Mar 20</ref>
|-
|-
|[[Chlamydia]] caviae
|[[Chlamydia]] caviae
Line 513: Line 513:
|1,173,390
|1,173,390
|998
|998
|<ref>{{cite journal | journal=Nucleic Acids Res | volume=31 | pages=2134-47 | date=2003 | author=Read TD et al. | title=Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae | url=http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=12682364 | pmid=12682364 | doi = 10.1093/nar/gkg321 }}</ref>
|<ref>Nucleic Acids Res. 2003 Apr 15, 31(8):2134-47</ref>
|-
|-
|Chlamydia muridarum
|Chlamydia muridarum
Line 520: Line 520:
|1,072,950
|1,072,950
|904
|904
|<ref>{{cite journal | journal=Nucleic Acids Res | volume=28 | pages=1397-406 | date=2000 | author=Read TD et al. | title=Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39 | url=http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=10684935 | pmid=10684935 | doi = 10.1093/nar/28.6.1397 }}</ref>
|<ref>Nucleic Acids Res. 2000 Mar 15, 28(6):1397-406</ref>
|-
|-
|Chlamydia trachomatis
|Chlamydia trachomatis
Line 527: Line 527:
|1,044,459
|1,044,459
|911
|911
|<ref>{{cite journal | journal=Infect Immun | volume=73 | pages=6407-18 | date=2005 | author=Carlson JH et al. | title=Comparative genomic analysis of Chlamydia trachomatis oculotropic and genitotropic strains | url=http://iai.asm.org/cgi/pmidlookup?view=long&pmid=16177312 | pmid=16177312 | doi = 10.1128/IAI.73.10.6407-6418.2005 }}</ref>
|<ref>Infect Immun. 2005 Oct, 73(10):6407-18</ref>
|-
|-
|Chlamydia trachomatis
|Chlamydia trachomatis
Line 534: Line 534:
|1,042,519
|1,042,519
|894
|894
|<ref>{{cite journal | journal=Science | volume=282 | pages=754-9 | date=1998 | author=Stephens RS et al. | title=Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis | url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=9784136 | pmid=9784136 | doi = 10.1126/science.282.5389.754 }}</ref>
|<ref>Science. 1998 Oct 23, 282(5389):754-9</ref>
|-
|-
|Chlamydophila abortus
|Chlamydophila abortus
Line 541: Line 541:
|1,144,377
|1,144,377
|961
|961
|<ref>{{cite journal | journal=Genome Res | volume=15 | pages=629-40 | date=2005 | author=Thomson NR et al. | title=The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation | url=http://www.genome.org/cgi/pmidlookup?view=long&pmid=15837807 | pmid=15837807 | doi = 10.1101/gr.3684805 }}</ref>
|<ref>Genome Res. 2005 May, 15(5):629-40. Epub 2005 Apr 18</ref>
|-
|-
|Chlamydophila felis
|Chlamydophila felis
Line 555: Line 555:
|1,229,853
|1,229,853
|1,110
|1,110
|<ref>{{cite journal | journal=Nucleic Acids Res | volume=28 | pages=1397-406 | date=2000 | author=Read TD et al. | title=Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39 | url=http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=10684935 | pmid=10684935 | doi = 10.1093/nar/28.6.1397 }}</ref>
|<ref>Nucleic Acids Res. 2000 Mar 15, 28(6):1397-406</ref>
|-
|-
|Chlamydophila pneumoniae
|Chlamydophila pneumoniae
Line 562: Line 562:
|1,230,230
|1,230,230
|1,052
|1,052
|<ref>{{cite journal | journal=Nat Genet | volume=21 | pages=385-9 | date=1999 | author=Kalman S et al. | title=Comparative genomes of Chlamydia pneumoniae and C. trachomatis | url=http://dx.doi.org/10.1038/7716 | pmid=10192388 | doi = 10.1038/7716 }}</ref>
|<ref>Nat Genet. 1999 Apr, 21(4):385-9</ref>
|-
|-
|Chlamydophila pneumoniae
|Chlamydophila pneumoniae
Line 590: Line 590:
|2,154,946
|2,154,946
|2,255
|2,255
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=99 | pages=9509-14 | date=2002 | author=Eisen JA et al. | title=The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12093901 | pmid=12093901 | doi = 10.1073/pnas.132181499 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2002 Jul 9, 99(14):9509-14. Epub 2002 Jul 1</ref>
|-
|-
|Chromobacterium violaceum
|Chromobacterium violaceum
Line 597: Line 597:
|4,751,080
|4,751,080
|4,407
|4,407
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=100 | pages=11660-5 | date=2003 | author=Brazilian National Genome Project Consortium. et al. | title=The complete genome sequence of Chromobacterium violaceum reveals remarkable and exploitable bacterial adaptability | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=14500782 | pmid=14500782 | doi = 10.1073/pnas.1832124100 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2003 Sep 30, 100(20):11660-5. Epub 2003 Sep 18</ref>
|-
|-
|Chromohalobacter salexigens
|Chromohalobacter salexigens
Line 611: Line 611:
|3,940,880
|3,940,880
|3,672
|3,672
|<ref>{{cite journal | journal=J Bacteriol | volume=183 | pages=4823-38 | date=2001 | author=Nölling J et al. | title=Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=11466286 | pmid=11466286 | doi = 10.1128/JB.183.16.4823-4838.2001 }}</ref>
|<ref>J Bacteriol. 2001 Aug, 183(16):4823-38</ref>
|-
|-
|Clostridium difficile
|Clostridium difficile
Line 625: Line 625:
|3,031,430
|3,031,430
|2,660
|2,660
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=99 | pages=996-1001 | date=2002 | author=Shimizu T et al. | title=Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=11792842 | pmid=11792842 | doi = 10.1073/pnas.022493799 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2002 Jan 22, 99(2):996-1001. Epub 2002 Jan 15</ref>
|-
|-
|[[Clostridium tetani]]
|[[Clostridium tetani]]
Line 632: Line 632:
|2,799,251
|2,799,251
|2,373
|2,373
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=100 | pages=1316-21 | date=2003 | author=Bruggemann H et al. | title=The genome sequence of Clostridium tetani, the causative agent of tetanus disease | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12552129 | pmid=12552129 | doi = 10.1073/pnas.0335853100 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2003 Feb 4, 100(3):1316-21. Epub 2003 Jan 27</ref>
|-
|-
|Colwellia psychrerythraea
|Colwellia psychrerythraea
Line 646: Line 646:
|2,488,635
|2,488,635
|2,320
|2,320
|<ref>{{cite journal | journal=Nucleic Acids Res | volume=31 | pages=6516-23 | date=2003 | author=Cerdeño-Tárraga AM et al. | title=The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129 | url=http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=14602910 | pmid=14602910 | doi = 10.1093/nar/gkg874 }}</ref>
|<ref>Nucleic Acids Res. 2003 Nov 15, 31(22):6516-23</ref>
|-
|-
|Corynebacterium efficiens
|Corynebacterium efficiens
Line 653: Line 653:
|3,147,090
|3,147,090
|2,942
|2,942
|<ref>{{cite journal | journal=Genome Res | volume=13 | pages=1572-9 | date=2003 | author=Nishio Y et al. | title=Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens | url=http://www.genome.org/cgi/pmidlookup?view=long&pmid=12840036 | pmid=12840036 | doi = 10.1101/gr.1285603 }}</ref>
|<ref>Genome Res. 2003 Jul, 13(7):1572-9</ref>
|-
|-
|Corynebacterium glutamicum
|Corynebacterium glutamicum
Line 667: Line 667:
|3,282,708
|3,282,708
|3,058
|3,058
|<ref>{{cite journal | journal=J Biotechnol | volume=104 | pages=5-25 | date=2003 | author=Kalinowski J et al. | title=The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins | url=http://linkinghub.elsevier.com/retrieve/pii/S0168165603001548 | pmid=12948626 | doi = 10.1016/S0168-1656(03)00154-8 }}</ref>
|<ref>J Biotechnol. 2003 Sep 4, 104(1-3):5-25</ref>
|-
|-
|Corynebacterium jeikeium
|Corynebacterium jeikeium
Line 674: Line 674:
|2,462,499
|2,462,499
|2,104
|2,104
|<ref>{{cite journal | journal=J Bacteriol | volume=187 | pages=4671-82 | date=2005 | author=Tauch A et al. | title=Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=15968079 | pmid=15968079 | doi = 10.1128/JB.187.13.4671-4682.2005 }}</ref>
|<ref>J Bacteriol. 2005 Jul, 187(13):4671-82</ref>
|-
|-
|Coxiella burnetii
|Coxiella burnetii
Line 681: Line 681:
|1,995,281
|1,995,281
|2,016
|2,016
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=100 | pages=5455-60 | date=2003 | author=Seshadri R et al. | title=Complete genome sequence of the Q-fever pathogen Coxiella burnetii | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12704232 | pmid=12704232 | doi = 10.1073/pnas.0931379100 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2003 Apr 29, 100(9):5455-60. Epub 2003 Apr 18</ref>
|-
|-
|[[Cyanobacteria bacterium]]
|[[Cyanobacteria bacterium]]
Line 688: Line 688:
|2,932,766
|2,932,766
|2,760
|2,760
|<ref>{{cite journal | journal=Appl Environ Microbiol | volume=72 | pages=544-50 | date=2006 | author=Allewalt JP et al. | title=Effect of temperature and light on growth of and photosynthesis by Synechococcus isolates typical of those predominating in the octopus spring microbial mat community of Yellowstone National Park | url=http://aem.asm.org/cgi/pmidlookup?view=long&pmid=16391090 | pmid=16391090 | doi = 10.1128/AEM.72.1.544-550.2006 }}</ref>
|<ref>Appl Environ Microbiol. 2006 Jan, 72(1):544-50</ref>
|-
|-
|Cyanobacteria bacterium
|Cyanobacteria bacterium
Line 695: Line 695:
|3,046,682
|3,046,682
|2,862
|2,862
|<ref>{{cite journal | journal=Appl Environ Microbiol | volume=72 | pages=544-50 | date=2006 | author=Allewalt JP et al. | title=Effect of temperature and light on growth of and photosynthesis by Synechococcus isolates typical of those predominating in the octopus spring microbial mat community of Yellowstone National Park | url=http://aem.asm.org/cgi/pmidlookup?view=long&pmid=16391090 | pmid=16391090 | doi = 10.1128/AEM.72.1.544-550.2006 }}</ref>
|<ref>Appl Environ Microbiol. 2006 Jan, 72(1):544-50</ref>
|-
|-
|Cytophaga hutchinsonii
|Cytophaga hutchinsonii
Line 716: Line 716:
|1,469,720
|1,469,720
|1,580
|1,580
|<ref>{{cite journal | journal=Science | volume=307 | pages=105-8 | date=2005 | author=Seshadri R et al. | title=Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes | url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=15637277 | pmid=15637277 | doi = 10.1126/science.1102226 }}</ref>
|<ref>Science. 2005 Jan 7, 307(5706):105-8</ref>
|-
|-
|Dehalococcoides species
|Dehalococcoides species
Line 723: Line 723:
|1,395,502
|1,395,502
|1,458
|1,458
|<ref>{{cite journal | journal=Nat Biotechnol | volume=23 | pages=1269-73 | date=2005 | author=Kube M et al. | title=Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1 | url=http://dx.doi.org/10.1038/nbt1131 | pmid=16116419 | doi = 10.1038/nbt1131 }}</ref>
|<ref>Nat Biotechnol. 2005 Oct, 23(10):1269-73. Epub 2005 Aug 21</ref>
|-
|-
|[[Deinococcus]] geothermalis
|[[Deinococcus]] geothermalis
|DSM11300
|DSM11300
|Deinococcus-Thermus [[Deinococci]]
|Deinococcus-Thermus [[Deinococci]]
|~3,270,000
|2,467,205
|3,132
|2,335
|Unpublished
|<ref> PLoS ONE. 2007 Sep 26;2(9):e955</ref>
|-
|-
|Deinococcus radiodurans
|Deinococcus radiodurans
|R1
|R1 (ATCC BAA-816)
|Deinococcus-Thermus Deinococci
|Deinococcus-Thermus Deinococci
|3,284,156
|2,648,638
|3,256
|2,579
|<ref>{{cite journal | journal=Science | volume=286 | pages=1571-7 | date=1999 | author=White O et al. | title=Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1 | url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=10567266 | pmid=10567266 | doi = 10.1126/science.286.5444.1571 }}</ref>
|<ref>Science. 1999 Nov 19, 286(5444):1571-7</ref>
|-
|-
|Unspecified
|Unspecified
Line 744: Line 744:
|412,348
|412,348
|357
|357
|<ref>{{cite journal | journal=Science | volume=286 | pages=1571-7 | date=1999 | author=White O et al. | title=Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1 | url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=10567266 | pmid=10567266 | doi = 10.1126/science.286.5444.1571 }}</ref>
|<ref>Science. 1999 Nov 19, 286(5444):1571-7</ref>
|-
|-
|Desulfitobacterium hafniense
|Desulfitobacterium hafniense
Line 751: Line 751:
|5,727,534
|5,727,534
|5,060
|5,060
|<ref>{{cite journal | journal=J Bacteriol | volume=188 | pages=2262-74 | date=2006 | author=Nonaka H et al. | title=Complete genome sequence of the dehalorespiring bacterium Desulfitobacterium hafniense Y51 and comparison with Dehalococcoides ethenogenes 195 | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=16513756 | pmid=16513756 | doi = 10.1128/JB.188.6.2262-2274.2006 }}</ref>
|<ref>J Bacteriol. 2006 Mar, 188(6):2262-74</ref>
|-
|-
|Desulfotalea psychrophila
|Desulfotalea psychrophila
Line 772: Line 772:
|3,570,858
|3,570,858
|3,379
|3,379
|<ref>{{cite journal | journal=Nat Biotechnol | volume=22 | pages=554-9 | date=2004 | author=Heidelberg JF et al. | title=The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough | url=http://dx.doi.org/10.1038/nbt959 | pmid=15077118 | doi = 10.1038/nbt959 }}</ref>
|<ref>Nat Biotechnol. 2004 May, 22(5):554-9. Epub 2004 Apr 11</ref>
|-
|-
|Ehrlichia canis
|Ehrlichia canis
Line 786: Line 786:
|1,176,248
|1,176,248
|1,105
|1,105
|<ref>{{cite journal | journal=PLoS Genet | volume=2 | pages= | date=2006 | author=Hotopp JC et al. | title=Comparative genomics of emerging human ehrlichiosis agents | url=http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=16482227 | pmid=16482227 | doi = }}</ref>
|<ref>PLoS Genet. 2006 Feb 17, 2(2):e21</ref>
|-
|-
|Ehrlichia ruminantium
|Ehrlichia ruminantium
Line 807: Line 807:
|1,516,355
|1,516,355
|920
|920
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=102 | pages=838-43 | date=2005 | author=Collins NE et al. | title=The genome of the heartwater agent Ehrlichia ruminantium contains multiple tandem repeats of actively variable copy number | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15637156 | pmid=15637156 | doi = 10.1073/pnas.0406633102 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2005 Jan 18, 102(3):838-43. Epub 2005 Jan 6</ref>
|-
|-
|Enterococcus faecalis
|Enterococcus faecalis
Line 814: Line 814:
|3,218,031
|3,218,031
|3,113
|3,113
|<ref>{{cite journal | journal=Science | volume=299 | pages=2071-4 | date=2003 | author=Paulsen IT et al. | title=Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis | url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=12663927 | pmid=12663927 | doi = 10.1126/science.1080613 }}</ref>
|<ref>Science. 2003 Mar 28, 299(5615):2071-4</ref>
|-
|-
|Erwinia carotovora
|Erwinia carotovora
Line 842: Line 842:
|5,231,428
|5,231,428
|5,379
|5,379
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=99 | pages=17020-4 | date=2002 | author=Welch RA et al. | title=Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12471157 | pmid=12471157 | doi = 10.1073/pnas.252529799 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2002 Dec 24, 99(26):17020-4. Epub 2002 Dec 5</ref>
|-
|-
|Escherichia coli
|Escherichia coli
Line 849: Line 849:
|4,639,675
|4,639,675
|4,331
|4,331
|<ref>{{cite journal | journal=Science | volume=277 | pages=1453-74 | date=1997 | author=Blattner FR et al. | title=The complete genome sequence of Escherichia coli K-12 | url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=9278503 | pmid=9278503 | doi = 10.1126/science.277.5331.1453 }}</ref>
|<ref>Science. 1997 Sep 5, 277(5331):1453-74</ref>
|-
|-
|Unspecified
|Unspecified
Line 856: Line 856:
|4,646,332
|4,646,332
|4,337
|4,337
|<ref>{{cite journal | journal=Nucleic Acids Res | volume=34 | pages=1-9 | date=2006 | author=Riley M et al. | title=Escherichia coli K-12: a cooperatively developed annotation snapshot--2005 | url=http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=16397293 | pmid=16397293 | doi = 10.1093/nar/gkj405 }}</ref>
|<ref>Nucleic Acids Res. 2006 Jan 5, 34(1):1-9. Print 2006</ref>
|-
|-
|Escherichia coli
|Escherichia coli
Line 863: Line 863:
|5,528,445
|5,528,445
|5,349
|5,349
|<ref>{{cite journal | journal=Nature | volume=409 | pages=529-33 | date=2001 | author=Perna NT et al. | title=Genome sequence of enterohaemorrhagic Escherichia coli O157:H7 | url=http://dx.doi.org/10.1038/35054089 | pmid=11206551 | doi = 10.1038/35054089 }}</ref>
|<ref>Nature. 2001 Jan 25, 409(6819):529-33</ref>
|-
|-
|Unspecified
|Unspecified
Line 870: Line 870:
|5,498,450
|5,498,450
|5,361
|5,361
|<ref>Genet Syst. 1999 Oct, 74(5):227-39</ref>
|<ref>{{cite journal | journal=Genet Syst. | volume=74 | pages=227-39 | date=1999 | author=, | title=Related Resources | url= | pmid= | doi = }}</ref>
|-
|-
|Escherichia coli
|Escherichia coli
Line 891: Line 891:
|1,892,819
|1,892,819
|1,804
|1,804
|<ref>{{cite journal | journal=Nat Genet | volume=37 | pages=153-9 | date=2005 | author=Larsson P et al. | title=The complete genome sequence of Francisella tularensis, the causative agent of tularemia | url=http://dx.doi.org/10.1038/ng1499 | pmid=15640799 | doi = 10.1038/ng1499 }}</ref>
|<ref>Nat Genet. 2005 Feb, 37(2):153-9. Epub 2005 Jan 9</ref>
|-
|-
|Frankia species
|Frankia species
Line 905: Line 905:
|2,174,500
|2,174,500
|2,067
|2,067
|<ref>{{cite journal | journal=J Bacteriol | volume=184 | pages=2005-18 | date=2002 | author=Kapatral V et al. | title=Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586 | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=11889109 | pmid=11889109 | doi = 10.1128/JB.184.7.2005-2018.2002 }}</ref>
|<ref>J Bacteriol. 2002 Apr, 184(7):2005-18</ref>
|-
|-
|Geobacillus kaustophilus
|Geobacillus kaustophilus
Line 912: Line 912:
|3,544,776
|3,544,776
|3,498
|3,498
|<ref>{{cite journal | journal=Nucleic Acids Res | volume=32 | pages=6292-303 | date=2004 | author=Takami H et al. | title=Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus | url=http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=15576355 | pmid=15576355 | doi = 10.1093/nar/gkh970 }}</ref>
|<ref>Nucleic Acids Res. 2004 Dec 1, 32(21):6292-303. Print 2004</ref>
|-
|-
|Geobacter metallireducens
|Geobacter metallireducens
Line 926: Line 926:
|3,814,139
|3,814,139
|3,447
|3,447
|<ref>{{cite journal | journal=Science | volume=302 | pages=1967-9 | date=2003 | author=Methé BA et al. | title=Genome of Geobacter sulfurreducens: metal reduction in subsurface environments | url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=14671304 | pmid=14671304 | doi = 10.1126/science.1088727 }}</ref>
|<ref>Science. 2003 Dec 12, 302(5652):1967-9</ref>
|-
|-
|[[Gloeobacter violaceus]]
|[[Gloeobacter violaceus]]
Line 933: Line 933:
|4,659,019
|4,659,019
|4,430
|4,430
|<ref>{{cite journal | journal=DNA Res | volume=10 | pages=137-45 | date=2003 | author=Nakamura Y et al. | title=Complete genome structure of Gloeobacter violaceus PCC 7421, a cyanobacterium that lacks thylakoids | url=http://dnaresearch.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=14621292 | pmid=14621292 | doi = 10.1093/dnares/10.4.137 }}</ref>
|<ref>DNA Res. 2003 Aug 31, 10(4):137-45</ref>
|-
|-
|Gluconobacter oxydans
|Gluconobacter oxydans
Line 940: Line 940:
|2,702,173
|2,702,173
|2,432
|2,432
|<ref>{{cite journal | journal=Nat Biotechnol | volume=23 | pages=195-200 | date=2005 | author=Prust C et al. | title=Complete genome sequence of the acetic acid bacterium Gluconobacter oxydans | url=http://dx.doi.org/10.1038/nbt1062 | pmid=15665824 | doi = 10.1038/nbt1062 }}</ref>
|<ref>Nat Biotechnol. 2005 Feb, 23(2):195-200. Epub 2005 Jan 23</ref>
|-
|-
|[[Haemophilus]]ducreyi
|[[Haemophilus]]ducreyi
Line 954: Line 954:
|1,913,428
|1,913,428
|1,792
|1,792
|<ref>{{cite journal | journal=J Bacteriol | volume=187 | pages=4627-36 | date=2005 | author=Harrison A et al. | title=Genomic sequence of an otitis media isolate of nontypeable Haemophilus influenzae: comparative study with H. influenzae serotype d, strain KW20 | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=15968074 | pmid=15968074 | doi = 10.1128/JB.187.13.4627-4636.2005 }}</ref>
|<ref>J Bacteriol. 2005 Jul, 187(13):4627-36</ref>
|-
|-
|Haemophilus influenzae
|Haemophilus influenzae
Line 961: Line 961:
|1,830,138
|1,830,138
|1,709
|1,709
|<ref>{{cite journal | journal=Science | volume=269 | pages=496-512 | date=1995 | author=Fleischmann RD et al. | title=Whole-genome random sequencing and assembly of Haemophilus influenzae Rd | url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=7542800 | pmid=7542800 | doi = 10.1126/science.7542800 }}</ref>
|<ref>Science. 1995 Jul 28, 269(5223):496-512</ref>
|-
|-
|Hahella chejuensis
|Hahella chejuensis
Line 968: Line 968:
|7,215,267
|7,215,267
|6,782
|6,782
|<ref>{{cite journal | journal=Nucleic Acids Res | volume=33 | pages=7066-73 | date=2005 | author=Jeong H et al. | title=Genomic blueprint of Hahella chejuensis, a marine microbe producing an algicidal agent | url=http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=16352867 | pmid=16352867 | doi = 10.1093/nar/gki1016 }}</ref>
|<ref>Nucleic Acids Res. 2005 Dec 13, 33(22):7066-73. Print 2005</ref>
|-
|-
|[[Helicobacter]] hepaticus
|[[Helicobacter]] hepaticus
Line 975: Line 975:
|1,799,146
|1,799,146
|1,875
|1,875
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=100 | pages=7901-6 | date=2003 | author=Suerbaum S et al. | title=The complete genome sequence of the carcinogenic bacterium Helicobacter hepaticus | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12810954 | pmid=12810954 | doi = 10.1073/pnas.1332093100 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2003 Jun 24, 100(13):7901-6. Epub 2003 Jun 16</ref>
|-
|-
|[[Helicobacter pylori]]
|[[Helicobacter pylori]]
Line 982: Line 982:
|1,667,867
|1,667,867
|1,566
|1,566
|<ref>{{cite journal | journal=Nature | volume=388 | pages=539-47 | date=1997 | author=Tomb JF et al. | title=The complete genome sequence of the gastric pathogen Helicobacter pylori | url=http://dx.doi.org/10.1038/41483 | pmid=9252185 | doi = 10.1038/41483 }}</ref>
|<ref>Nature. 1997 Aug 7, 388(6642):539-47</ref>
|-
|-
|Helicobacter pylori
|Helicobacter pylori
Line 996: Line 996:
|1,643,831
|1,643,831
|1,491
|1,491
|<ref>{{cite journal | journal=Nature | volume=397 | pages=176-80 | date=1999 | author=Alm RA et al. | title=Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori | url=http://dx.doi.org/10.1038/16495 | pmid=9923682 | doi = 10.1038/16495 }}</ref>
|<ref>Nature. 1999 Jan 14, 397(6715):176-80</ref>
|-
|-
|Idiomarina loihiensis
|Idiomarina loihiensis
Line 1,003: Line 1,003:
|2,839,318
|2,839,318
|2,628
|2,628
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=101 | pages=18036-41 | date=2004 | author=Hou S et al. | title=Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15596722 | pmid=15596722 | doi = 10.1073/pnas.0407638102 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2004 Dec 28, 101(52):18036-41. Epub 2004 Dec 13</ref>
|-
|-
|Jannaschia species
|Jannaschia species
Line 1,017: Line 1,017:
|1,993,564
|1,993,564
|1,864
|1,864
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=102 | pages=3906-12 | date=2005 | author=Altermann E et al. | title=Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15671160 | pmid=15671160 | doi = 10.1073/pnas.0409188102 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2005 Mar 15, 102(11):3906-12. Epub 2005 Jan 25</ref>
|-
|-
|[[Lactobacillus]] delbrueckii
|[[Lactobacillus]] delbrueckii
Line 1,031: Line 1,031:
|1,992,676
|1,992,676
|1,821
|1,821
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=101 | pages=2512-7 | date=2004 | author=Pridmore RD et al. | title=The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533 | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=14983040 | pmid=14983040 | doi = 10.1073/pnas.0307327101 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2004 Feb 24, 101(8):2512-7</ref>
|-
|-
|Lactobacillus plantarum
|Lactobacillus plantarum
Line 1,038: Line 1,038:
|3,308,274
|3,308,274
|3,051
|3,051
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=100 | pages=1990-5 | date=2003 | author=Kleerebezem M et al. | title=Complete genome sequence of Lactobacillus plantarum WCFS1 | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12566566 | pmid=12566566 | doi = 10.1073/pnas.0337704100 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2003 Feb 18, 100(4):1990-5. Epub 2003 Feb 3</ref>
|-
|-
|Lactobacillus sakei
|Lactobacillus sakei
Line 1,066: Line 1,066:
|2,365,589
|2,365,589
|2,266
|2,266
|<ref>{{cite journal | journal=Genome Res | volume=11 | pages=731-53 | date=2001 | author=Bolotin A et al. | title=The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403 | url=http://www.genome.org/cgi/pmidlookup?view=long&pmid=11337471 | pmid=11337471 | doi = 10.1101/gr.GR-1697R }}</ref>
|<ref>Genome Res. 2001 May, 11(5):731-53</ref>
|-
|-
|Lawsonia intracellularis
|Lawsonia intracellularis
Line 1,101: Line 1,101:
|3,345,687
|3,345,687
|2,947
|2,947
|<ref>{{cite journal | journal=Nat Genet | volume=36 | pages=1165-73 | date=2004 | author=Cazalet C et al. | title=Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity | url=http://dx.doi.org/10.1038/ng1447 | pmid=15467720 | doi = 10.1038/ng1447 }}</ref>
|<ref>Nat Genet. 2004 Nov, 36(11):1165-73. Epub 2004 Oct 3</ref>
|-
|-
|Legionella pneumophila
|Legionella pneumophila
Line 1,108: Line 1,108:
|3,503,610
|3,503,610
|3,082
|3,082
|<ref>{{cite journal | journal=Nat Genet | volume=36 | pages=1165-73 | date=2004 | author=Cazalet C et al. | title=Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity | url=http://dx.doi.org/10.1038/ng1447 | pmid=15467720 | doi = 10.1038/ng1447 }}</ref>
|<ref>Nat Genet. 2004 Nov, 36(11):1165-73. Epub 2004 Oct 3</ref>
|-
|-
|Legionella pneumophila
|Legionella pneumophila
Line 1,129: Line 1,129:
|4,332,241
|4,332,241
|4,358
|4,358
|<ref>{{cite journal | journal=Nature | volume=422 | pages=888-93 | date=2003 | author=Ren SX et al. | title=Unique physiological and pathogenic features of Leptospira interrogans revealed by whole-genome sequencing | url=http://dx.doi.org/10.1038/nature01597 | pmid=12712204 | doi = 10.1038/nature01597 }}</ref>
|<ref>Nature. 2003 Apr 24, 422(6934):888-93</ref>
|-
|-
|Unspecified
|Unspecified
Line 1,136: Line 1,136:
|358,943
|358,943
|367
|367
|<ref>{{cite journal | journal=Nature | volume=422 | pages=888-93 | date=2003 | author=Ren SX et al. | title=Unique physiological and pathogenic features of Leptospira interrogans revealed by whole-genome sequencing | url=http://dx.doi.org/10.1038/nature01597 | pmid=12712204 | doi = 10.1038/nature01597 }}</ref>
|<ref>Nature. 2003 Apr 24, 422(6934):888-93</ref>
|-
|-
|Leptospira interrogans
|Leptospira interrogans
Line 1,143: Line 1,143:
|4,277,185
|4,277,185
|3,394
|3,394
|<ref>{{cite journal | journal=J Bacteriol | volume=186 | pages=2164-72 | date=2004 | author=Nascimento AL et al. | title=Comparative genomics of two Leptospira interrogans serovars reveals novel insights into physiology and pathogenesis | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=15028702 | pmid=15028702 | doi = 10.1128/JB.186.7.2164-2172.2004 }}</ref>
|<ref>J Bacteriol. 2004 Apr, 186(7):2164-72</ref>
|-
|-
|Unspecified
|Unspecified
Line 1,150: Line 1,150:
|350,181
|350,181
|264
|264
|<ref>{{cite journal | journal=J Bacteriol | volume=186 | pages=2164-72 | date=2004 | author=Nascimento AL et al. | title=Comparative genomics of two Leptospira interrogans serovars reveals novel insights into physiology and pathogenesis | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=15028702 | pmid=15028702 | doi = 10.1128/JB.186.7.2164-2172.2004 }}</ref>
|<ref>J Bacteriol. 2004 Apr, 186(7):2164-72</ref>
|-
|-
|[[Listeria]] innocua
|[[Listeria]] innocua
Line 1,157: Line 1,157:
|3,011,208
|3,011,208
|2,981
|2,981
|<ref>{{cite journal | journal=Science | volume=294 | pages=849-52 | date=2001 | author=Glaser P et al. | title=Comparative genomics of Listeria species | url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=11679669 | pmid=11679669 | doi = }}</ref>
|<ref>Science. 2001 Oct 26, 294(5543):849-52</ref>
|-
|-
|Listeria monocyto
|Listeria monocyto
Line 1,164: Line 1,164:
|2,905,187
|2,905,187
|2,821
|2,821
|<ref>{{cite journal | journal=Nucleic Acids Res | volume=32 | pages=2386-95 | date=2004 | author=Nelson KE et al. | title=Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species | url=http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=15115801 | pmid=15115801 | doi = 10.1093/nar/gkh562 }}</ref>
|<ref>Nucleic Acids Res. 2004 Apr 28, 32(8):2386-95. Print 2004</ref>
|-
|-
|Listeria monocyto
|Listeria monocyto
Line 1,171: Line 1,171:
|2,944,528
|2,944,528
|2,855
|2,855
|<ref>{{cite journal | journal=Science | volume=294 | pages=849-52 | date=2001 | author=Glaser P et al. | title=Comparative genomics of Listeria species | url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=11679669 | pmid=11679669 | doi = }}</ref>
|<ref>Science. 2001 Oct 26, 294(5543):849-52</ref>
|-
|-
|[[Magnetospirillum]] magneticum
|[[Magnetospirillum]] magneticum
Line 1,178: Line 1,178:
|4,967,148
|4,967,148
|4,559
|4,559
|<ref>{{cite journal | journal=DNA Res | volume=12 | pages=157-66 | date=2005 | author=Matsunaga T et al. | title=Complete genome sequence of the facultative anaerobic magnetotactic bacterium Magnetospirillum sp. strain AMB-1 | url=http://dnaresearch.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=16303747 | pmid=16303747 | doi = 10.1093/dnares/dsi002 }}</ref>
|<ref>DNA Res. 2005, 12(3):157-66</ref>
|-
|-
|Mannheimia succiniciproducens
|Mannheimia succiniciproducens
Line 1,199: Line 1,199:
|7,036,071
|7,036,071
|6,752
|6,752
|<ref>{{cite journal | journal=DNA Res | volume=7 | pages=331-8 | date=2000 | author=Kaneko T et al. | title=Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti | url=http://dnaresearch.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=11214968 | pmid=11214968 | doi = 10.1093/dnares/7.6.331 }}</ref>
|<ref>DNA Res. 2000 Dec 31, 7(6):331-8</ref>
|-
|-
|Methylobacillus flagellatus
|Methylobacillus flagellatus
Line 1,213: Line 1,213:
|3,304,561
|3,304,561
|2,960
|2,960
|<ref>{{cite journal | journal=PLoS Biol | volume=2 | pages= | date=2004 | author=Ward N et al. | title=Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath) | url=http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=15383840 | pmid=15383840 | doi = }}</ref>
|<ref>PLoS Biol. 2004 Oct, 2(10):e303. Epub 2004 Sep 21</ref>
|-
|-
|Moorella thermoacetica
|Moorella thermoacetica
Line 1,227: Line 1,227:
|4,829,781
|4,829,781
|4,350
|4,350
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=102 | pages=12344-9 | date=2005 | author=Li L et al. | title=The complete genome sequence of Mycobacterium avium subspecies paratuberculosis | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=16116077 | pmid=16116077 | doi = 10.1073/pnas.0505662102 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2005 Aug 30, 102(35):12344-9. Epub 2005 Aug 22</ref>
|-
|-
|Mycobacterium bovis
|Mycobacterium bovis
Line 1,234: Line 1,234:
|4,345,492
|4,345,492
|3,953
|3,953
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=100 | pages=7877-82 | date=2003 | author=Garnier T et al. | title=The complete genome sequence of Mycobacterium bovis | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12788972 | pmid=12788972 | doi = 10.1073/pnas.1130426100 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2003 Jun 24, 100(13):7877-82. Epub 2003 Jun 3</ref>
|-
|-
|Mycobacterium leprae
|Mycobacterium leprae
Line 1,241: Line 1,241:
|3,268,203
|3,268,203
|2,720
|2,720
|<ref>{{cite journal | journal=Nature | volume=409 | pages=1007-11 | date=2001 | author=Cole ST et al. | title=Massive gene decay in the leprosy bacillus | url=http://dx.doi.org/10.1038/35059006 | pmid=11234002 | doi = 10.1038/35059006 }}</ref>
|<ref>Nature. 2001 Feb 22, 409(6823):1007-11</ref>
|-
|-
|Mycobacterium tuberculosis
|Mycobacterium tuberculosis
Line 1,255: Line 1,255:
|4,411,532
|4,411,532
|3,999
|3,999
|<ref>{{cite journal | journal=Nature | volume=393 | pages=537-44 | date=1998 | author=Cole ST et al. | title=Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence | url=http://dx.doi.org/10.1038/31159 | pmid=9634230 | doi = 10.1038/31159 }}</ref>
|<ref>Nature. 1998 Jun 11, 393(6685):537-44</ref>
|-
|-
|[[Mycoplasma]] capricolum
|[[Mycoplasma]] capricolum
Line 1,269: Line 1,269:
|996,422
|996,422
|726
|726
|<ref>{{cite journal | journal=Microbiology | volume=149 | pages=2307-16 | date=2003 | author=Papazisi L et al. | title=The complete genome sequence of the avian pathogen Mycoplasma gallisepticum strain R(low) | url=http://mic.sgmjournals.org/cgi/pmidlookup?view=long&pmid=12949158 | pmid=12949158 | doi = 10.1099/mic.0.26427-0 }}</ref>
|<ref>Microbiology. 2003 Sep, 149(Pt 9):2307-16</ref>
|-
|-
|[[Mycoplasma genitalium]]
|[[Mycoplasma genitalium]]
Line 1,276: Line 1,276:
|580,076
|580,076
|476
|476
|<ref>{{cite journal | journal=Science | volume=270 | pages=397-403 | date=1995 | author=Fraser CM et al. | title=The minimal gene complement of Mycoplasma genitalium | url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=7569993 | pmid=7569993 | doi = 10.1126/science.270.5235.397 }}</ref>
|<ref>Science. 1995 Oct 20, 270(5235):397-403</ref>
|-
|-
|Mycoplasma hyopneumoniae
|Mycoplasma hyopneumoniae
Line 1,283: Line 1,283:
|892,758
|892,758
|691
|691
|<ref>{{cite journal | journal=J Bacteriol | volume=186 | pages=7123-33 | date=2004 | author=Minion FC et al. | title=The genome sequence of Mycoplasma hyopneumoniae strain 232, the agent of swine mycoplasmosis | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=15489423 | pmid=15489423 | doi = 10.1128/JB.186.21.7123-7133.2004 }}</ref>
|<ref>J Bacteriol. 2004 Nov, 186(21):7123-33</ref>
|-
|-
|Mycoplasma hyopneumoniae
|Mycoplasma hyopneumoniae
Line 1,290: Line 1,290:
|920,079
|920,079
|663
|663
|<ref>{{cite journal | journal=J Bacteriol | volume=187 | pages=5568-77 | date=2005 | author=Vasconcelos AT et al. | title=Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=16077101 | pmid=16077101 | doi = 10.1128/JB.187.16.5568-5577.2005 }}</ref>
|<ref>J Bacteriol. 2005 Aug, 187(16):5568-77</ref>
|-
|-
|Mycoplasma hyopneumoniae
|Mycoplasma hyopneumoniae
Line 1,297: Line 1,297:
|897,405
|897,405
|665
|665
|<ref>{{cite journal | journal=J Bacteriol | volume=187 | pages=5568-77 | date=2005 | author=Vasconcelos AT et al. | title=Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=16077101 | pmid=16077101 | doi = 10.1128/JB.187.16.5568-5577.2005 }}</ref>
|<ref>J Bacteriol. 2005 Aug, 187(16):5568-77</ref>
|-
|-
|Mycoplasma mobile
|Mycoplasma mobile
Line 1,304: Line 1,304:
|777,079
|777,079
|635
|635
|<ref>{{cite journal | journal=Genome Res | volume=14 | pages=1447-61 | date=2004 | author=Jaffe JD et al. | title=The complete genome and proteome of Mycoplasma mobile | url=http://www.genome.org/cgi/pmidlookup?view=long&pmid=15289470 | pmid=15289470 | doi = 10.1101/gr.2674004 }}</ref>
|<ref>Genome Res. 2004 Aug, 14(8):1447-61</ref>
|-
|-
|Mycoplasma mycoides
|Mycoplasma mycoides
Line 1,311: Line 1,311:
|1,211,703
|1,211,703
|1,016
|1,016
|<ref>{{cite journal | journal=Genome Res | volume=14 | pages=221-7 | date=2004 | author=Westberg J et al. | title=The genome sequence of Mycoplasma mycoides subsp. mycoides SC type strain PG1T, the causative agent of contagious bovine pleuropneumonia (CBPP) | url=http://www.genome.org/cgi/pmidlookup?view=long&pmid=14762060 | pmid=14762060 | doi = 10.1101/gr.1673304 }}</ref>
|<ref>Genome Res. 2004 Feb, 14(2):221-7</ref>
|-
|-
|Mycoplasma penetrans
|Mycoplasma penetrans
Line 1,318: Line 1,318:
|1,358,633
|1,358,633
|1,037
|1,037
|<ref>{{cite journal | journal=Nucleic Acids Res | volume=30 | pages=5293-300 | date=2002 | author=Sasaki Y et al. | title=The complete genomic sequence of Mycoplasma penetrans, an intracellular bacterial pathogen in humans | url=http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=12466555 | pmid=12466555 | doi = 10.1093/nar/gkf667 }}</ref>
|<ref>Nucleic Acids Res. 2002 Dec 1, 30(23):5293-300</ref>
|-
|-
|Mycoplasma pneumoniae
|Mycoplasma pneumoniae
Line 1,325: Line 1,325:
|816,394
|816,394
|688
|688
|<ref>{{cite journal | journal=Nucleic Acids Res | volume=24 | pages=4420-49 | date=1996 | author=Himmelreich R et al. | title=Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae | url=http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=8948633 | pmid=8948633 | doi = 10.1093/nar/24.22.4420 }}</ref>
|<ref>Nucleic Acids Res. 1996 Nov 15, 24(22):4420-49</ref>
|-
|-
|Mycoplasma pulmonis
|Mycoplasma pulmonis
Line 1,332: Line 1,332:
|963,879
|963,879
|782
|782
|<ref>{{cite journal | journal=Nucleic Acids Res | volume=29 | pages=2145-53 | date=2001 | author=Chambaud I et al. | title=The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis | url=http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=11353084 | pmid=11353084 | doi = 10.1093/nar/29.10.2145 }}</ref>
|<ref>Nucleic Acids Res. 2001 May 15, 29(10):2145-53</ref>
|-
|-
|Mycoplasma synoviae
|Mycoplasma synoviae
Line 1,339: Line 1,339:
|799,476
|799,476
|672
|672
|<ref>{{cite journal | journal=J Bacteriol | volume=187 | pages=5568-77 | date=2005 | author=Vasconcelos AT et al. | title=Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=16077101 | pmid=16077101 | doi = 10.1128/JB.187.16.5568-5577.2005 }}</ref>
|<ref>J Bacteriol. 2005 Aug, 187(16):5568-77</ref>
|-
|-
|Myxococcus xanthus
|Myxococcus xanthus
Line 1,360: Line 1,360:
|2,184,406
|2,184,406
|2,121
|2,121
|<ref>{{cite journal | journal=Nature | volume=404 | pages=502-6 | date=2000 | author=Parkhill J et al. | title=Complete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491 | url=http://dx.doi.org/10.1038/35006655 | pmid=10761919 | doi = 10.1038/35006655 }}</ref>
|<ref>Nature. 2000 Mar 30, 404(6777):502-6</ref>
|-
|-
|Neisseria meningitidis
|Neisseria meningitidis
Line 1,367: Line 1,367:
|2,272,360
|2,272,360
|2,063
|2,063
|<ref>{{cite journal | journal=Science | volume=287 | pages=1809-15 | date=2000 | author=Tettelin H et al. | title=Complete genome sequence of Neisseria meningitidis serogroup B strain MC58 | url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=10710307 | pmid=10710307 | doi = 10.1126/science.287.5459.1809 }}</ref>
|<ref>Science. 2000 Mar 10, 287(5459):1809-15</ref>
|-
|-
|Neorickettsia sennetsu
|Neorickettsia sennetsu
Line 1,374: Line 1,374:
|859,006
|859,006
|932
|932
|<ref>{{cite journal | journal=PLoS Genet | volume=2 | pages= | date=2006 | author=Hotopp JC et al. | title=Comparative genomics of emerging human ehrlichiosis agents | url=http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=16482227 | pmid=16482227 | doi = }}</ref>
|<ref>PLoS Genet. 2006 Feb 17, 2(2):e21</ref>
|-
|-
|[[Nitrobacter]] hamburgensis
|[[Nitrobacter]] hamburgensis
Line 1,402: Line 1,402:
|2,812,094
|2,812,094
|2,574
|2,574
|<ref>{{cite journal | journal=J Bacteriol | volume=185 | pages=2759-73 | date=2003 | author=Chain P et al. | title=Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=12700255 | pmid=12700255 | doi = 10.1128/JB.185.9.2759-2773.2003 }}</ref>
|<ref>J Bacteriol. 2003 May, 185(9):2759-73</ref>
|-
|-
|Nitrosospira multiformis
|Nitrosospira multiformis
Line 1,416: Line 1,416:
|6,021,225
|6,021,225
|5,683
|5,683
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=101 | pages=14925-30 | date=2004 | author=Ishikawa J et al. | title=The complete genomic sequence of Nocardia farcinica IFM 10152 | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15466710 | pmid=15466710 | doi = 10.1073/pnas.0406410101 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2004 Oct 12, 101(41):14925-30. Epub 2004 Oct 4</ref>
|-
|-
|Novosphingobium aromaticivorans
|Novosphingobium aromaticivorans
Line 1,430: Line 1,430:
|3,630,528
|3,630,528
|3,496
|3,496
|<ref>{{cite journal | journal=FEMS Microbiol Lett | volume=205 | pages=291-7 | date=2001 | author=Lu J, Nogi Y, Takami H. | title=Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge | url=http://linkinghub.elsevier.com/retrieve/pii/S0378109701004931 | pmid=11750818 | doi = 10.1111/j.1574-6968.2001.tb10963.x }}</ref>
|<ref>FEMS Microbiol Lett. 2001 Dec 18, 205(2):291-7</ref>
|-
|-
|Parachlamy diaspecies
|Parachlamy diaspecies
Line 1,437: Line 1,437:
|2,414,465
|2,414,465
|2,031
|2,031
|<ref>{{cite journal | journal=Science | volume=304 | pages=728-30 | date=2004 | author=Horn M et al. | title=Illuminating the evolutionary history of chlamydiae | url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=15073324 | pmid=15073324 | doi = 10.1126/science.1096330 }}</ref>
|<ref>Science. 2004 Apr 30, 304(5671):728-30. Epub 2004 Apr 8</ref>
|-
|-
|Pasteurella multocida
|Pasteurella multocida
Line 1,444: Line 1,444:
|2,257,487
|2,257,487
|2,014
|2,014
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=98 | pages=3460-5 | date=2001 | author=May BJ et al. | title=Complete genomic sequence of Pasteurella multocida, Pm70 | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=11248100 | pmid=11248100 | doi = 10.1073/pnas.051634598 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2001 Mar 13, 98(6):3460-5. Epub 2001 Mar 6</ref>
|-
|-
|Pelagibacter ubique
|Pelagibacter ubique
Line 1,451: Line 1,451:
|1,308,759
|1,308,759
|1,354
|1,354
|<ref>{{cite journal | journal=Science | volume=309 | pages=1242-5 | date=2005 | author=Giovannoni SJ et al. | title=Genome streamlining in a cosmopolitan oceanic bacterium | url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=16109880 | pmid=16109880 | doi = 10.1126/science.1114057 }}</ref>
|<ref>Science. 2005 Aug 19, 309(5738):1242-5</ref>
|-
|-
|Pelobacter carbinolicus
|Pelobacter carbinolicus
Line 1,500: Line 1,500:
|860,631
|860,631
|754
|754
|<ref>{{cite journal | journal=Nat Genet | volume=36 | pages=27-9 | date=2004 | author=Oshima K et al. | title=Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma | url=http://dx.doi.org/10.1038/ng1277 | pmid=14661021 | doi = 10.1038/ng1277 }}</ref>
|<ref>Nat Genet. 2004 Jan, 36(1):27-9. Epub 2003 Dec 7</ref>
|-
|-
|Polaromonas species
|Polaromonas species
Line 1,514: Line 1,514:
|2,343,476
|2,343,476
|1,909
|1,909
|<ref>{{cite journal | journal=J Bacteriol | volume=185 | pages=5591-601 | date=2003 | author=Nelson KE et al. | title=Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83 | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=12949112 | pmid=12949112 | doi = 10.1128/JB.185.18.5591-5601.2003 }}</ref>
|<ref>J Bacteriol. 2003 Sep, 185(18):5591-601</ref>
|-
|-
|Prochlorococcus marinus
|Prochlorococcus marinus
Line 1,521: Line 1,521:
|1,657,990
|1,657,990
|1,716
|1,716
|<ref>{{cite journal | journal=Nature | volume=424 | pages=1042-7 | date=2003 | author=Rocap G et al. | title=Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation | url=http://dx.doi.org/10.1038/nature01947 | pmid=12917642 | doi = 10.1038/nature01947 }}</ref>
|<ref>Nature. 2003 Aug 28, 424(6952):1042-7. Epub 2003 Aug 13</ref>
|-
|-
|Prochlorococcus marinus
|Prochlorococcus marinus
Line 1,535: Line 1,535:
|2,410,873
|2,410,873
|2,273
|2,273
|<ref>{{cite journal | journal=Nature | volume=424 | pages=1042-7 | date=2003 | author=Rocap G et al. | title=Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation | url=http://dx.doi.org/10.1038/nature01947 | pmid=12917642 | doi = 10.1038/nature01947 }}</ref>
|<ref>Nature. 2003 Aug 28, 424(6952):1042-7. Epub 2003 Aug 13</ref>
|-
|-
|Prochlorococcus marinus
|Prochlorococcus marinus
Line 1,549: Line 1,549:
|1,751,080
|1,751,080
|1,882
|1,882
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=100 | pages=10020-5 | date=2003 | author=Dufresne A et al. | title=Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12917486 | pmid=12917486 | doi = 10.1073/pnas.1733211100 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2003 Aug 19, 100(17):10020-5. Epub 2003 Aug 13</ref>
|-
|-
|Propionibacterium acnes
|Propionibacterium acnes
Line 1,563: Line 1,563:
|3,214,944
|3,214,944
|2,941
|2,941
|<ref>{{cite journal | journal=Genome Res | volume=15 | pages=1325-35 | date=2005 | author=Médigue C et al. | title=Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125 | url=http://www.genome.org/cgi/pmidlookup?view=long&pmid=16169927 | pmid=16169927 | doi = 10.1101/gr.4126905 }}</ref>
|<ref>Genome Res. 2005 Oct, 15(10):1325-35. Epub 2005 Sep 16</ref>
|-
|-
|Unspecified
|Unspecified
Line 1,570: Line 1,570:
|635,328
|635,328
|546
|546
|<ref>{{cite journal | journal=Genome Res | volume=15 | pages=1325-35 | date=2005 | author=Médigue C et al. | title=Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125 | url=http://www.genome.org/cgi/pmidlookup?view=long&pmid=16169927 | pmid=16169927 | doi = 10.1101/gr.4126905 }}</ref>
|<ref>Genome Res. 2005 Oct, 15(10):1325-35. Epub 2005 Sep 16</ref>
|-
|-
|[[Pseudomonas aeruginosa]]
|[[Pseudomonas aeruginosa]]
Line 1,577: Line 1,577:
|6,264,403
|6,264,403
|5,566
|5,566
|<ref>{{cite journal | journal=Nature | volume=406 | pages=959-64 | date=2000 | author=Stover CK et al. | title=Complete genome sequence of Pseudomonas aeruginosa PA01, an opportunistic pathogen | url=http://dx.doi.org/10.1038/35023079 | pmid=10984043 | doi = 10.1038/35023079 }}</ref>
|<ref>Nature. 2000 Aug 31, 406(6799):959-64</ref>
|-
|-
|[[Pseudomonas]] entomophila
|[[Pseudomonas]] entomophila
Line 1,591: Line 1,591:
|7,074,893
|7,074,893
|6,137
|6,137
|<ref>{{cite journal | journal=Nat Biotechnol | volume=23 | pages=873-8 | date=2005 | author=Paulsen IT et al. | title=Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5 | url=http://dx.doi.org/10.1038/nbt1110 | pmid=15980861 | doi = 10.1038/nbt1110 }}</ref>
|<ref>Nat Biotechnol. 2005 Jul, 23(7):873-8. Epub 2005 Jun 26</ref>
|-
|-
|Pseudomonas fluorescens
|Pseudomonas fluorescens
Line 1,605: Line 1,605:
|6,181,863
|6,181,863
|5,350
|5,350
|<ref>{{cite journal | journal=Environ Microbiol | volume=4 | pages=799-808 | date=2002 | author=Nelson KE et al. | title=Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440 | url=http://www.blackwell-synergy.com/openurl?genre=article&sid=nlm:pubmed&issn=1462-2912&date=2002&volume=4&issue=12&spage=799 | pmid=12534463 | doi = 10.1046/j.1462-2920.2002.00366.x }}</ref>
|<ref>Environ Microbiol. 2002 Dec, 4(12):799-808</ref>
|-
|-
|Pseudomonas syringae
|Pseudomonas syringae
Line 1,612: Line 1,612:
|6,093,698
|6,093,698
|5,136
|5,136
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=102 | pages=11064-9 | date=2005 | author=Feil H et al. | title=Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000 | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=16043691 | pmid=16043691 | doi = 10.1073/pnas.0504930102 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2005 Aug 2, 102(31):11064-9. Epub 2005 Jul 25</ref>
|-
|-
|Pseudomonas syringae
|Pseudomonas syringae
Line 1,619: Line 1,619:
|6,397,126
|6,397,126
|5,470
|5,470
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=100 | pages=10181-6 | date=2003 | author=Buell CR et al. | title=The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000 | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12928499 | pmid=12928499 | doi = 10.1073/pnas.1731982100 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2003 Sep 2, 100(18):10181-6. Epub 2003 Aug 19</ref>
|-
|-
|Pseudomonas syringae
|Pseudomonas syringae
Line 1,682: Line 1,682:
|3,716,413
|3,716,413
|3,441
|3,441
|<ref>{{cite journal | journal=Nature | volume=415 | pages=497-502 | date=2002 | author=Salanoubat M et al. | title=Genome sequence of the plant pathogen Ralstonia solanacearum | url=http://dx.doi.org/10.1038/415497a | pmid=11823852 | doi = 10.1038/415497a }}</ref>
|<ref>Nature. 2002 Jan 31, 415(6871):497-502</ref>
|-
|-
|Unspecified
|Unspecified
Line 1,689: Line 1,689:
|2,094,509
|2,094,509
|1,679
|1,679
|<ref>{{cite journal | journal=Nature | volume=415 | pages=497-502 | date=2002 | author=Salanoubat M et al. | title=Genome sequence of the plant pathogen Ralstonia solanacearum | url=http://dx.doi.org/10.1038/415497a | pmid=11823852 | doi = 10.1038/415497a }}</ref>
|<ref>Nature. 2002 Jan 31, 415(6871):497-502</ref>
|-
|-
|[[Rhizobium]] etli
|[[Rhizobium]] etli
Line 1,696: Line 1,696:
|4,381,608
|4,381,608
|4,067
|4,067
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=103 | pages=3834-9 | date=2006 | author=González V et al. | title=The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=16505379 | pmid=16505379 | doi = 10.1073/pnas.0508502103 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2006 Mar 7, 103(10):3834-9. Epub 2006 Feb 27</ref>
|-
|-
|[[Rhizobium leguminosarum]]
|[[Rhizobium leguminosarum]]
Line 1,752: Line 1,752:
|5,459,213
|5,459,213
|4,833
|4,833
|<ref>{{cite journal | journal=Nat Biotechnol | volume=22 | pages=55-61 | date=2004 | author=Larimer FW et al. | title=Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris | url=http://dx.doi.org/10.1038/nbt923 | pmid=14704707 | doi = 10.1038/nbt923 }}</ref>
|<ref>Nat Biotechnol. 2004 Jan, 22(1):55-61. Epub 2003 Dec 14</ref>
|-
|-
|Rhodopseudomonas palustris
|Rhodopseudomonas palustris
Line 1,780: Line 1,780:
|1,268,755
|1,268,755
|1,374
|1,374
|<ref>{{cite journal | journal=Science | volume=290 | pages=347-50 | date=2000 | author=Ogata H et al. | title=Selfish DNA in protein-coding genes of Rickettsia | url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=11030655 | pmid=11030655 | doi = 10.1126/science.290.5490.347 }}</ref>
|<ref>Science. 2000 Oct 13, 290(5490):347-50</ref>
|-
|-
|Rickettsia felis
|Rickettsia felis
Line 1,787: Line 1,787:
|1,485,148
|1,485,148
|1,400
|1,400
|<ref>{{cite journal | journal=PLoS Biol | volume=3 | pages= | date=2005 | author=Ogata H et al. | title=The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite | url=http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=15984913 | pmid=15984913 | doi = }}</ref>
|<ref>PLoS Biol. 2005 Aug, 3(8):e248. Epub 2005 Jul 5</ref>
|-
|-
|Rickettsia prowazekii
|Rickettsia prowazekii
Line 1,794: Line 1,794:
|1,111,523
|1,111,523
|834
|834
|<ref>{{cite journal | journal=Nature | volume=396 | pages=133-40 | date=1998 | author=Andersson SG et al. | title=The genome sequence of Rickettsia prowazekii and the origin of mitochondria | url=http://dx.doi.org/10.1038/24094 | pmid=9823893 | doi = 10.1038/24094 }}</ref>
|<ref>Nature. 1998 Nov 12, 396(6707):133-40</ref>
|-
|-
|[[Rickettsia typhi]]
|[[Rickettsia typhi]]
Line 1,801: Line 1,801:
|1,111,496
|1,111,496
|838
|838
|<ref>{{cite journal | journal=J Bacteriol | volume=186 | pages=5842-55 | date=2004 | author=McLeod MP et al. | title=Complete genome sequence of Rickettsia typhi and comparison with sequences of other rickettsiae | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=15317790 | pmid=15317790 | doi = 10.1128/JB.186.17.5842-5855.2004 }}</ref>
|<ref>J Bacteriol. 2004 Sep, 186(17):5842-55</ref>
|-
|-
|Rubrobacter xylanophilus
|Rubrobacter xylanophilus
Line 1,822: Line 1,822:
|3,551,823
|3,551,823
|2,801
|2,801
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=102 | pages=18147-52 | date=2005 | author=Mongodin EF et al. | title=The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=16330755 | pmid=16330755 | doi = 10.1073/pnas.0509073102 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2005 Dec 13, 102(50):18147-52. Epub 2005 Dec 5</ref>
|-
|-
|[[Salmonella enterica]]
|[[Salmonella enterica]]
Line 1,829: Line 1,829:
|4,585,229
|4,585,229
|4,093
|4,093
|<ref>{{cite journal | journal=Nat Genet | volume=36 | pages=1268-74 | date=2004 | author=McClelland M et al. | title=Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid | url=http://dx.doi.org/10.1038/ng1470 | pmid=15531882 | doi = 10.1038/ng1470 }}</ref>
|<ref>Nat Genet. 2004 Dec, 36(12):1268-74. Epub 2004 Nov 7</ref>
|-
|-
|[[Salmonella]] enterica
|[[Salmonella]] enterica
Line 1,836: Line 1,836:
|4,755,700
|4,755,700
|4,445
|4,445
|<ref>{{cite journal | journal=Nucleic Acids Res | volume=33 | pages=1690-8 | date=2005 | author=Chiu CH et al. | title=The genome sequence of Salmonella enterica serovar Choleraesuis, a highly invasive and resistant zoonotic pathogen | url=http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=15781495 | pmid=15781495 | doi = 10.1093/nar/gki297 }}</ref>
|<ref>Nucleic Acids Res. 2005 Mar 21, 33(5):1690-8. Print 2005</ref>
|-
|-
|Salmonella enterica
|Salmonella enterica
Line 1,843: Line 1,843:
|4,791,961
|4,791,961
|4,323
|4,323
|<ref>{{cite journal | journal=J Bacteriol | volume=185 | pages=2330-7 | date=2003 | author=Deng W et al. | title=Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18 | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=12644504 | pmid=12644504 | doi = 10.1128/JB.185.7.2330-2337.2003 }}</ref>
|<ref>J Bacteriol. 2003 Apr, 185(7):2330-7</ref>
|-
|-
|Salmonella enterica
|Salmonella enterica
Line 1,850: Line 1,850:
|4,809,037
|4,809,037
|4,600
|4,600
|<ref>{{cite journal | journal=Nature | volume=413 | pages=848-52 | date=2001 | author=Parkhill J et al. | title=Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18 | url=http://dx.doi.org/10.1038/35101607 | pmid=11677608 | doi = 10.1038/35101607 }}</ref>
|<ref>Nature. 2001 Oct 25, 413(6858):848-52</ref>
|-
|-
|[[Salmonella typhimurium]]
|[[Salmonella typhimurium]]
Line 1,857: Line 1,857:
|4,857,432
|4,857,432
|4,452
|4,452
|<ref>{{cite journal | journal=Nature | volume=413 | pages=852-6 | date=2001 | author=McClelland M et al. | title=Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 | url=http://dx.doi.org/10.1038/35101614 | pmid=11677609 | doi = 10.1038/35101614 }}</ref>
|<ref>Nature. 2001 Oct 25, 413(6858):852-6</ref>
|-
|-
|Shewanella denitrificans
|Shewanella denitrificans
Line 1,871: Line 1,871:
|4,969,803
|4,969,803
|4,630
|4,630
|<ref>{{cite journal | journal=Nat Biotechnol | volume=20 | pages=1118-23 | date=2002 | author=Heidelberg JF et al. | title=Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis | url=http://dx.doi.org/10.1038/nbt749 | pmid=12368813 | doi = 10.1038/nbt749 }}</ref>
|<ref>Nat Biotechnol. 2002 Nov, 20(11):1118-23. Epub 2002 Oct 7</ref>
|-
|-
|[[Shigella]] boydii
|[[Shigella]] boydii
Line 1,878: Line 1,878:
|4,519,823
|4,519,823
|4,142
|4,142
|<ref>{{cite journal | journal=Nucleic Acids Res | volume=33 | pages=6445-58 | date=2005 | author=Yang F et al. | title=Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery | url=http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=16275786 | pmid=16275786 | doi = 10.1093/nar/gki954 }}</ref>
|<ref>Nucleic Acids Res. 2005 Nov 7, 33(19):6445-58. Print 2005</ref>
|-
|-
|Shigella dysenteriae
|Shigella dysenteriae
Line 1,885: Line 1,885:
|4,369,232
|4,369,232
|4,277
|4,277
|<ref>{{cite journal | journal=Nucleic Acids Res | volume=33 | pages=6445-58 | date=2005 | author=Yang F et al. | title=Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery | url=http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=16275786 | pmid=16275786 | doi = 10.1093/nar/gki954 }}</ref>
|<ref>Nucleic Acids Res. 2005 Nov 7, 33(19):6445-58. Print 2005</ref>
|-
|-
|Shigella flexneri
|Shigella flexneri
Line 1,892: Line 1,892:
|4,599,354
|4,599,354
|4,073
|4,073
|<ref>{{cite journal | journal=Infect Immun | volume=71 | pages=2775-86 | date=2003 | author=Wei J et al. | title=Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T | url=http://iai.asm.org/cgi/pmidlookup?view=long&pmid=12704152 | pmid=12704152 | doi = 10.1128/IAI.71.5.2775-2786.2003 }}</ref>
|<ref>Infect Immun. 2003 May, 71(5):2775-86</ref>
|-
|-
|Shigella flexneri
|Shigella flexneri
Line 1,899: Line 1,899:
|4,607,203
|4,607,203
|4,436
|4,436
|<ref>{{cite journal | journal=Nucleic Acids Res | volume=30 | pages=4432-41 | date=2002 | author=Jin Q et al. | title=Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157 | url=http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=12384590 | pmid=12384590 | doi = 10.1093/nar/gkf566 }}</ref>
|<ref>Nucleic Acids Res. 2002 Oct 15, 30(20):4432-41</ref>
|-
|-
|Shigella sonnei
|Shigella sonnei
Line 1,906: Line 1,906:
|4,825,265
|4,825,265
|4,224
|4,224
|<ref>{{cite journal | journal=Nucleic Acids Res | volume=33 | pages=6445-58 | date=2005 | author=Yang F et al. | title=Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery | url=http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=16275786 | pmid=16275786 | doi = 10.1093/nar/gki954 }}</ref>
|<ref>Nucleic Acids Res. 2005 Nov 7, 33(19):6445-58. Print 2005</ref>
|-
|-
|Silicibacter pomeroyi
|Silicibacter pomeroyi
Line 1,913: Line 1,913:
|4,109,442
|4,109,442
|3,810
|3,810
|<ref>{{cite journal | journal=Nature | volume=432 | pages=910-3 | date=2004 | author=Moran MA et al. | title=Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment | url=http://dx.doi.org/10.1038/nature03170 | pmid=15602564 | doi = 10.1038/nature03170 }}</ref>
|<ref>Nature. 2004 Dec 16, 432(7019):910-3</ref>
|-
|-
|Silicibacter species
|Silicibacter species
Line 1,927: Line 1,927:
|3,654,135
|3,654,135
|3,341
|3,341
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=98 | pages=9877-82 | date=2001 | author=Capela D et al. | title=Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021 | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=11481430 | pmid=11481430 | doi = 10.1073/pnas.161294398 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2001 Aug 14, 98(17):9877-82. Epub 2001 Jul 31</ref>
|-
|-
|Sodalis glossinidius
|Sodalis glossinidius
Line 1,934: Line 1,934:
|4,171,146
|4,171,146
|2,432
|2,432
|<ref>{{cite journal | journal=Genome Res | volume=16 | pages=149-56 | date=2006 | author=Toh H et al. | title=Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host | url=http://www.genome.org/cgi/pmidlookup?view=long&pmid=16365377 | pmid=16365377 | doi = 10.1101/gr.4106106 }}</ref>
|<ref>Genome Res. 2006 Feb, 16(2):149-56. Epub 2005 Dec 19</ref>
|-
|-
|Sphingopyxis alaskensis
|Sphingopyxis alaskensis
Line 1,948: Line 1,948:
|2,809,422
|2,809,422
|2,673
|2,673
|<ref>{{cite journal | journal=J Bacteriol | volume=187 | pages=2426-38 | date=2005 | author=Gill SR et al. | title=Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=15774886 | pmid=15774886 | doi = 10.1128/JB.187.7.2426-2438.2005 }}</ref>
|<ref>J Bacteriol. 2005 Apr, 187(7):2426-38</ref>
|-
|-
|[[Staphylococcus]] aureus
|[[Staphylococcus]] aureus
Line 1,955: Line 1,955:
|2,902,619
|2,902,619
|2,744
|2,744
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=101 | pages=9786-91 | date=2004 | author=Holden MT et al. | title=Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15213324 | pmid=15213324 | doi = 10.1073/pnas.0402521101 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2004 Jun 29, 101(26):9786-91. Epub 2004 Jun 22</ref>
|-
|-
|Staphylococcus aureus
|Staphylococcus aureus
Line 1,962: Line 1,962:
|2,799,802
|2,799,802
|2,619
|2,619
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=101 | pages=9786-91 | date=2004 | author=Holden MT et al. | title=Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15213324 | pmid=15213324 | doi = 10.1073/pnas.0402521101 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2004 Jun 29, 101(26):9786-91. Epub 2004 Jun 22</ref>
|-
|-
|Staphylococcus aureus
|Staphylococcus aureus
Line 1,969: Line 1,969:
|2,878,529
|2,878,529
|2,699
|2,699
|<ref>{{cite journal | journal=Lancet | volume=357 | pages=1225-40 | date=2001 | author=Kuroda M et al. | title=Whole genome sequencing of meticillin-resistant Staphylococcus aureus | url=http://linkinghub.elsevier.com/retrieve/pii/S0140673600044032 | pmid=11418146 | doi = 10.1016/S0140-6736(00)04403-2 }}</ref>
|<ref>Lancet. 2001 Apr 21, 357(9264):1225-40</ref>
|-
|-
|Staphylococcus aureus
|Staphylococcus aureus
Line 1,976: Line 1,976:
|2,820,462
|2,820,462
|2,632
|2,632
|<ref>{{cite journal | journal=Lancet | volume=359 | pages=1819-27 | date=2002 | author=Baba T et al. | title=Genome and virulence determinants of high virulence community-acquired MRSA | url=http://linkinghub.elsevier.com/retrieve/pii/S0140673602087135 | pmid=12044378 | doi = 10.1016/S0140-6736(02)08713-5 }}</ref>
|<ref>Lancet. 2002 May 25, 359(9320):1819-27</ref>
|-
|-
|Staphylococcus aureus
|Staphylococcus aureus
Line 1,983: Line 1,983:
|2,814,816
|2,814,816
|2,593
|2,593
|<ref>{{cite journal | journal=Lancet | volume=357 | pages=1225-40 | date=2001 | author=Kuroda M et al. | title=Whole genome sequencing of meticillin-resistant Staphylococcus aureus | url=http://linkinghub.elsevier.com/retrieve/pii/S0140673600044032 | pmid=11418146 | doi = 10.1016/S0140-6736(00)04403-2 }}</ref>
|<ref>Lancet. 2001 Apr 21, 357(9264):1225-40</ref>
|-
|-
|Staphylococcus aureus
|Staphylococcus aureus
Line 2,004: Line 2,004:
|2,872,769
|2,872,769
|2,560
|2,560
|<ref>{{cite journal | journal=Lancet | volume=367 | pages=731-9 | date=2006 | author=Diep BA et al. | title=Complete genome sequence of USA300, an epidemic clone of community-acquired meticillin-resistant Staphylococcus aureus | url=http://linkinghub.elsevier.com/retrieve/pii/S0140-6736(06)68231-7 | pmid=16517273 | doi = 10.1016/S0140-6736(06)68231-7 }}</ref>
|<ref>Lancet. 2006 Mar 4, 367(9512):731-9</ref>
|-
|-
|Staphylococcus epidermidis
|Staphylococcus epidermidis
Line 2,018: Line 2,018:
|2,616,530
|2,616,530
|2,494
|2,494
|<ref>{{cite journal | journal=J Bacteriol | volume=187 | pages=2426-38 | date=2005 | author=Gill SR et al. | title=Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=15774886 | pmid=15774886 | doi = 10.1128/JB.187.7.2426-2438.2005 }}</ref>
|<ref>J Bacteriol. 2005 Apr, 187(7):2426-38</ref>
|-
|-
|Staphylococcus haemolyticus
|Staphylococcus haemolyticus
Line 2,025: Line 2,025:
|2,685,015
|2,685,015
|2,678
|2,678
|<ref>{{cite journal | journal=J Bacteriol | volume=187 | pages=7292-308 | date=2005 | author=Takeuchi F et al. | title=Whole-genome sequencing of staphylococcus haemolyticus uncovers the extreme plasticity of its genome and the evolution of human-colonizing staphylococcal species | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=16237012 | pmid=16237012 | doi = 10.1128/JB.187.21.7292-7308.2005 }}</ref>
|<ref>J Bacteriol. 2005 Nov, 187(21):7292-308</ref>
|-
|-
|Staphylococcus saprophyticus
|Staphylococcus saprophyticus
Line 2,032: Line 2,032:
|2,516,575
|2,516,575
|2,446
|2,446
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=102 | pages=13272-7 | date=2005 | author=Kuroda M et al. | title=Whole genome sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urinary tract infection | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=16135568 | pmid=16135568 | doi = 10.1073/pnas.0502950102 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2005 Sep 13, 102(37):13272-7. Epub 2005 Aug 31</ref>
|-
|-
|Streptococcus agalactiae
|Streptococcus agalactiae
Line 2,039: Line 2,039:
|2,127,839
|2,127,839
|1,996
|1,996
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=102 | pages=13950-5 | date=2005 | author=Tettelin H et al. | title=Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome" | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=16172379 | pmid=16172379 | doi = 10.1073/pnas.0506758102 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2005 Sep 27, 102(39):13950-5. Epub 2005 Sep 19</ref>
|-
|-
|Streptococcus agalactiae
|Streptococcus agalactiae
Line 2,046: Line 2,046:
|2,211,485
|2,211,485
|2,134
|2,134
|<ref>{{cite journal | journal=Mol Microbiol | volume=45 | pages=1499-513 | date=2002 | author=Glaser P et al. | title=Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease | url=http://www.blackwell-synergy.com/openurl?genre=article&sid=nlm:pubmed&issn=0950-382X&date=2002&volume=45&issue=6&spage=1499 | pmid=12354221 | doi = 10.1046/j.1365-2958.2002.03126.x }}</ref>
|<ref>Mol Microbiol. 2002 Sep, 45(6):1499-513</ref>
|-
|-
|Streptococcus agalactiae
|Streptococcus agalactiae
Line 2,053: Line 2,053:
|2,160,267
|2,160,267
|2,124
|2,124
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=99 | pages=12391-6 | date=2002 | author=Tettelin H et al. | title=Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12200547 | pmid=12200547 | doi = 10.1073/pnas.182380799 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2002 Sep 17, 99(19):12391-6. Epub 2002 Aug 28</ref>
|-
|-
|Streptococcus mutans
|Streptococcus mutans
Line 2,060: Line 2,060:
|2,030,921
|2,030,921
|1,960
|1,960
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=99 | pages=14434-9 | date=2002 | author=Ajdić D et al. | title=Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12397186 | pmid=12397186 | doi = 10.1073/pnas.172501299 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2002 Oct 29, 99(22):14434-9. Epub 2002 Oct 23</ref>
|-
|-
|Streptococcus pneumoniae
|Streptococcus pneumoniae
Line 2,067: Line 2,067:
|2,038,615
|2,038,615
|2,043
|2,043
|<ref>{{cite journal | journal=J Bacteriol | volume=183 | pages=5709-17 | date=2001 | author=Hoskins J et al. | title=Genome of the bacterium Streptococcus pneumoniae strain R6 | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=11544234 | pmid=11544234 | doi = 10.1128/JB.183.19.5709-5717.2001 }}</ref>
|<ref>J Bacteriol. 2001 Oct, 183(19):5709-17</ref>
|-
|-
|Streptococcus pneumoniae
|Streptococcus pneumoniae
Line 2,074: Line 2,074:
|2,160,842
|2,160,842
|2,125
|2,125
|<ref>{{cite journal | journal=Science | volume=293 | pages=498-506 | date=2001 | author=Tettelin H et al. | title=Complete genome sequence of a virulent isolate of Streptococcus pneumoniae | url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=11463916 | pmid=11463916 | doi = 10.1126/science.1061217 }}</ref>
|<ref>Science. 2001 Jul 20, 293(5529):498-506</ref>
|-
|-
|Streptococcus pyo
|Streptococcus pyo
Line 2,088: Line 2,088:
|1,928,252
|1,928,252
|1,987
|1,987
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=103 | pages=7059-64 | date=2006 | author=Beres SB et al. | title=Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=16636287 | pmid=16636287 | doi = 10.1073/pnas.0510279103 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2006 May 2, 103(18):7059-64. Epub 2006 Apr 24</ref>
|-
|-
|Streptococcus pyo
|Streptococcus pyo
Line 2,095: Line 2,095:
|1,899,877
|1,899,877
|1,886
|1,886
|<ref>{{cite journal | journal=J Infect Dis | volume=190 | pages=727-38 | date=2004 | author=Banks DJ et al. | title=Progress toward characterization of the group A Streptococcus metagenome: complete genome sequence of a macrolide-resistant serotype M6 strain | url=http://www.journals.uchicago.edu/cgi-bin/resolve?JID32312 | pmid=15272401 | doi = 10.1086/422697 }}</ref>
|<ref>J Infect Dis. 2004 Aug 15, 190(4):727-38. Epub 2004 Jul 20</ref>
|-
|-
|Streptococcus pyo
|Streptococcus pyo
Line 2,102: Line 2,102:
|1,937,111
|1,937,111
|1,979
|1,979
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=103 | pages=7059-64 | date=2006 | author=Beres SB et al. | title=Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=16636287 | pmid=16636287 | doi = 10.1073/pnas.0510279103 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2006 May 2, 103(18):7059-64. Epub 2006 Apr 24</ref>
|-
|-
|Streptococcus pyo
|Streptococcus pyo
Line 2,109: Line 2,109:
|1,860,355
|1,860,355
|1,898
|1,898
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=103 | pages=7059-64 | date=2006 | author=Beres SB et al. | title=Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=16636287 | pmid=16636287 | doi = 10.1073/pnas.0510279103 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2006 May 2, 103(18):7059-64. Epub 2006 Apr 24</ref>
|-
|-
|Streptococcus pyo
|Streptococcus pyo
Line 2,116: Line 2,116:
|1,900,521
|1,900,521
|1,865
|1,865
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=99 | pages=10078-83 | date=2002 | author=Beres SB et al. | title=Genome sequence of a serotype M3 strain of group A Streptococcus: phage-encoded toxins, the high-virulence phenotype, and clone emergence | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12122206 | pmid=12122206 | doi = 10.1073/pnas.152298499 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2002 Jul 23, 99(15):10078-83. Epub 2002 Jul 16</ref>
|-
|-
|Streptococcus pyo
|Streptococcus pyo
Line 2,123: Line 2,123:
|1,838,554
|1,838,554
|1,865
|1,865
|<ref>{{cite journal | journal=J Infect Dis | volume=192 | pages=771-82 | date=2005 | author=Sumby P et al. | title=Evolutionary origin and emergence of a highly successful clone of serotype M1 group a Streptococcus involved multiple horizontal gene transfer events | url=http://www.journals.uchicago.edu/cgi-bin/resolve?JID34324 | pmid=16088826 | doi = 10.1086/432514 }}</ref>
|<ref>J Infect Dis. 2005 Sep 1, 192(5):771-82. Epub 2005 Jul 29</ref>
|-
|-
|Streptococcus pyo
|Streptococcus pyo
Line 2,130: Line 2,130:
|1,897,573
|1,897,573
|1,894
|1,894
|<ref>{{cite journal | journal=J Infect Dis | volume=192 | pages=760-70 | date=2005 | author=Green NM et al. | title=Genome sequence of a serotype M28 strain of group a streptococcus: potential new insights into puerperal sepsis and bacterial disease specificity | url=http://www.journals.uchicago.edu/cgi-bin/resolve?JID33878 | pmid=16088825 | doi = 10.1086/430618 }}</ref>
|<ref>J Infect Dis. 2005 Sep 1, 192(5):760-70. Epub 2005 Jul 29</ref>
|-
|-
|Streptococcus pyo
|Streptococcus pyo
Line 2,137: Line 2,137:
|1,895,017
|1,895,017
|1,845
|1,845
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=99 | pages=4668-73 | date=2002 | author=Smoot JC et al. | title=Genome sequence and comparative microarray analysis of serotype M18 group A Streptococcus strains associated with acute rheumatic fever outbreaks | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=11917108 | pmid=11917108 | doi = 10.1073/pnas.062526099 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2002 Apr 2, 99(7):4668-73. Epub 2002 Mar 26</ref>
|-
|-
|Streptococcus pyo
|Streptococcus pyo
Line 2,144: Line 2,144:
|1,836,467
|1,836,467
|1,877
|1,877
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=103 | pages=7059-64 | date=2006 | author=Beres SB et al. | title=Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=16636287 | pmid=16636287 | doi = 10.1073/pnas.0510279103 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2006 May 2, 103(18):7059-64. Epub 2006 Apr 24</ref>
|-
|-
|Streptococcus pyo
|Streptococcus pyo
Line 2,151: Line 2,151:
|1,852,441
|1,852,441
|1,696
|1,696
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=98 | pages=4658-63 | date=2001 | author=Ferretti JJ et al. | title=Complete genome sequence of an M1 strain of Streptococcus pyogenes | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=11296296 | pmid=11296296 | doi = 10.1073/pnas.071559398 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2001 Apr 10, 98(8):4658-63</ref>
|-
|-
|Streptococcus pyo
|Streptococcus pyo
Line 2,158: Line 2,158:
|1,894,275
|1,894,275
|1,861
|1,861
|<ref>{{cite journal | journal=Genome Res | volume=13 | pages=1042-55 | date=2003 | author=Nakagawa I et al. | title=Genome sequence of an M3 strain of Streptococcus pyogenes reveals a large-scale genomic rearrangement in invasive strains and new insights into phage evolution | url=http://www.genome.org/cgi/pmidlookup?view=long&pmid=12799345 | pmid=12799345 | doi = 10.1101/gr.1096703 }}</ref>
|<ref>Genome Res. 2003 Jun, 13(6A):1042-55</ref>
|-
|-
|Streptococcus thermophilus
|Streptococcus thermophilus
Line 2,165: Line 2,165:
|1,796,226
|1,796,226
|1,915
|1,915
|<ref>{{cite journal | journal=Nat Biotechnol | volume=22 | pages=1554-8 | date=2004 | author=Bolotin A et al. | title=Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus | url=http://dx.doi.org/10.1038/nbt1034 | pmid=15543133 | doi = 10.1038/nbt1034 }}</ref>
|<ref>Nat Biotechnol. 2004 Dec, 22(12):1554-8. Epub 2004 Nov 14</ref>
|-
|-
|Streptococcus thermophilus
|Streptococcus thermophilus
Line 2,172: Line 2,172:
|1,796,846
|1,796,846
|1,889
|1,889
|<ref>{{cite journal | journal=Nat Biotechnol | volume=22 | pages=1554-8 | date=2004 | author=Bolotin A et al. | title=Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus | url=http://dx.doi.org/10.1038/nbt1034 | pmid=15543133 | doi = 10.1038/nbt1034 }}</ref>
|<ref>Nat Biotechnol. 2004 Dec, 22(12):1554-8. Epub 2004 Nov 14</ref>
|-
|-
|Streptomyces avermitilis
|Streptomyces avermitilis
Line 2,179: Line 2,179:
|9,025,608
|9,025,608
|7,577
|7,577
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=98 | pages=12215-20 | date=2001 | author=Omura S et al. | title=Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=11572948 | pmid=11572948 | doi = 10.1073/pnas.211433198 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2001 Oct 9, 98(21):12215-20. Epub 2001 Sep 25</ref>
|-
|-
|Streptomyces coelicolor
|Streptomyces coelicolor
Line 2,186: Line 2,186:
|8,667,507
|8,667,507
|7,825
|7,825
|<ref>{{cite journal | journal=Mol Microbiol | volume=21 | pages=77-96 | date=1996 | author=Redenbach M et al. | title=A set of ordered cosmids and a detailed genetic and physical map for the 8 Mb Streptomyces coelicolor A3(2) chromosome | url= | pmid=8843436 | doi = 10.1046/j.1365-2958.1996.6191336.x }}</ref>
|<ref>Mol Microbiol. 1996 Jul, 21(1):77-96</ref>
|-
|-
|Symbiobacterium thermophilum
|Symbiobacterium thermophilum
Line 2,193: Line 2,193:
|3,566,135
|3,566,135
|3,337
|3,337
|<ref>{{cite journal | journal=Nucleic Acids Res | volume=32 | pages=4937-44 | date=2004 | author=Ueda K et al. | title=Genome sequence of Symbiobacterium thermophilum, an uncultivable bacterium that depends on microbial commensalism | url=http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=15383646 | pmid=15383646 | doi = 10.1093/nar/gkh830 }}</ref>
|<ref>Nucleic Acids Res. 2004 Sep 21, 32(16):4937-44. Print 2004</ref>
|-
|-
|[[Synechococcus]] elongatus
|[[Synechococcus]] elongatus
Line 2,214: Line 2,214:
|2,434,428
|2,434,428
|2,526
|2,526
|<ref>{{cite journal | journal=Nature | volume=424 | pages=1037-42 | date=2003 | author=Palenik B et al. | title=The genome of a motile marine Synechococcus | url=http://dx.doi.org/10.1038/nature01943 | pmid=12917641 | doi = 10.1038/nature01943 }}</ref>
|<ref>Nature. 2003 Aug 28, 424(6952):1037-42. Epub 2003 Aug 13</ref>
|-
|-
|Synechococcus species
|Synechococcus species
Line 2,235: Line 2,235:
|3,573,470
|3,573,470
|3,167
|3,167
|<ref>{{cite journal | journal=DNA Res. | volume=2 | pages=153-66 | date=1995 | author=Kaneko, T. | title=Related Resources | url= | pmid= | doi = 10.1093/dnares/2.4.153 }}</ref>
|<ref>DNA Res. 1995 Aug 31, 2(4):153-66, 191-8</ref>
|-
|-
|Syntrophus aciditrophicus
|Syntrophus aciditrophicus
Line 2,270: Line 2,270:
|1,860,725
|1,860,725
|1,846
|1,846
|<ref>{{cite journal | journal=Nature | volume=399 | pages=323-9 | date=1999 | author=Nelson KE et al. | title=Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima | url=http://dx.doi.org/10.1038/20601 | pmid=10360571 | doi = 10.1038/20601 }}</ref>
|<ref>Nature. 1999 May 27, 399(6734):323-9</ref>
|-
|-
|Thermus thermophilus
|Thermus thermophilus
Line 2,277: Line 2,277:
|1,894,877
|1,894,877
|1,982
|1,982
|<ref>{{cite journal | journal=Nat Biotechnol | volume=22 | pages=547-53 | date=2004 | author=Henne A et al. | title=The genome sequence of the extreme thermophile Thermus thermophilus | url=http://dx.doi.org/10.1038/nbt956 | pmid=15064768 | doi = 10.1038/nbt956 }}</ref>
|<ref>Nat Biotechnol. 2004 May, 22(5):547-53. Epub 2004 Apr 4</ref>
|-
|-
|Thermus thermophilus
|Thermus thermophilus
Line 2,312: Line 2,312:
|2,843,201
|2,843,201
|2,767
|2,767
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=101 | pages=5646-51 | date=2004 | author=Seshadri R et al. | title=Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15064399 | pmid=15064399 | doi = 10.1073/pnas.0307639101 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2004 Apr 13, 101(15):5646-51. Epub 2004 Apr 2</ref>
|-
|-
|Treponema pallidum
|Treponema pallidum
Line 2,319: Line 2,319:
|1,138,011
|1,138,011
|1,031
|1,031
|<ref>{{cite journal | journal=Science | volume=281 | pages=375-88 | date=1998 | author=Fraser CM et al. | title=Complete genome sequence of Treponema pallidum, the syphilis spirochete | url=http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=9665876 | pmid=9665876 | doi = 10.1126/science.281.5375.375 }}</ref>
|<ref>Science. 1998 Jul 17, 281(5375):375-88</ref>
|-
|-
|Tropheryma whippelii
|Tropheryma whippelii
Line 2,333: Line 2,333:
|927,303
|927,303
|808
|808
|<ref>{{cite journal | journal=Genome Res | volume=13 | pages=1800-9 | date=2003 | author=Raoult D et al. | title=Tropheryma whipplei Twist: a human pathogenic Actinobacteria with a reduced genome | url=http://www.genome.org/cgi/pmidlookup?view=long&pmid=12902375 | pmid=12902375 | doi = }}</ref>
|<ref>Genome Res. 2003 Aug, 13(8):1800-9</ref>
|-
|-
|Ureaplasma urealyticum
|Ureaplasma urealyticum
Line 2,340: Line 2,340:
|751,719
|751,719
|611
|611
|<ref>{{cite journal | journal=Nature | volume=407 | pages=757-62 | date=2000 | author=Glass JI et al. | title=The complete sequence of the mucosal pathogen Ureaplasma urealyticum | url=http://dx.doi.org/10.1038/35037619 | pmid=11048724 | doi = 10.1038/35037619 }}</ref>
|<ref>Nature. 2000 Oct 12, 407(6805):757-62</ref>
|-
|-
|[[Vibrio cholerae]]
|[[Vibrio cholerae]]
Line 2,347: Line 2,347:
|2,961,149
|2,961,149
|2,736
|2,736
|<ref>{{cite journal | journal=Nature | volume=406 | pages=477-83 | date=2000 | author=Heidelberg JF et al. | title=DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae | url=http://dx.doi.org/10.1038/35020000 | pmid=10952301 | doi = 10.1038/35020000 }}</ref>
|<ref>Nature. 2000 Aug 3, 406(6795):477-83</ref>
|-
|-
|Unspecified
|Unspecified
Line 2,354: Line 2,354:
|1,072,315
|1,072,315
|1,092
|1,092
|<ref>{{cite journal | journal=Nature | volume=406 | pages=477-83 | date=2000 | author=Heidelberg JF et al. | title=DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae | url=http://dx.doi.org/10.1038/35020000 | pmid=10952301 | doi = 10.1038/35020000 }}</ref>
|<ref>Nature. 2000 Aug 3, 406(6795):477-83</ref>
|-
|-
|[[Vibrio]] fischeri
|[[Vibrio]] fischeri
Line 2,361: Line 2,361:
|2,906,179
|2,906,179
|2,575
|2,575
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=102 | pages=3004-9 | date=2005 | author=Ruby EG et al. | title=Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15703294 | pmid=15703294 | doi = 10.1073/pnas.0409900102 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2005 Feb 22, 102(8):3004-9. Epub 2005 Feb 9</ref>
|-
|-
|Unspecified
|Unspecified
Line 2,368: Line 2,368:
|1,332,022
|1,332,022
|1,172
|1,172
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=102 | pages=3004-9 | date=2005 | author=Ruby EG et al. | title=Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15703294 | pmid=15703294 | doi = 10.1073/pnas.0409900102 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2005 Feb 22, 102(8):3004-9. Epub 2005 Feb 9</ref>
|-
|-
|Vibrio parahaemolyticus
|Vibrio parahaemolyticus
Line 2,375: Line 2,375:
|3,288,558
|3,288,558
|3,080
|3,080
|<ref>{{cite journal | journal=J Clin Microbiol | volume=38 | pages=2156-61 | date=2000 | author=Nasu H et al. | title=A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains | url=http://jcm.asm.org/cgi/pmidlookup?view=long&pmid=10834969 | pmid=10834969 | doi = }}</ref>
|<ref>J Clin Microbiol. 2000 Jun, 38(6):2156-61</ref>
|-
|-
|Unspecified
|Unspecified
Line 2,382: Line 2,382:
|1,877,212
|1,877,212
|1,752
|1,752
|<ref>{{cite journal | journal=J Clin Microbiol | volume=38 | pages=2156-61 | date=2000 | author=Nasu H et al. | title=A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains | url=http://jcm.asm.org/cgi/pmidlookup?view=long&pmid=10834969 | pmid=10834969 | doi = }}</ref>
|<ref>J Clin Microbiol. 2000 Jun, 38(6):2156-61</ref>
|-
|-
|Vibrio vulnificus
|Vibrio vulnificus
Line 2,389: Line 2,389:
|3,281,944
|3,281,944
|2,973
|2,973
|<ref>{{cite journal | journal=Infect Immun | volume=71 | pages=5461-71 | date=2003 | author=Kim YR et al. | title=Characterization and pathogenic significance of Vibrio vulnificus antigens preferentially expressed in septicemic patients | url=http://iai.asm.org/cgi/pmidlookup?view=long&pmid=14500463 | pmid=14500463 | doi = 10.1128/IAI.71.10.5461-5471.2003 }}</ref>
|<ref>Infect Immun. 2003 Oct, 71(10):5461-71</ref>
|-
|-
|Unspecified
|Unspecified
Line 2,396: Line 2,396:
|1,844,853
|1,844,853
|1,565
|1,565
|<ref>{{cite journal | journal=Infect Immun | volume=71 | pages=5461-71 | date=2003 | author=Kim YR et al. | title=Characterization and pathogenic significance of Vibrio vulnificus antigens preferentially expressed in septicemic patients | url=http://iai.asm.org/cgi/pmidlookup?view=long&pmid=14500463 | pmid=14500463 | doi = 10.1128/IAI.71.10.5461-5471.2003 }}</ref>
|<ref>Infect Immun. 2003 Oct, 71(10):5461-71</ref>
|-
|-
|Vibriovulnificus
|Vibriovulnificus
Line 2,403: Line 2,403:
|3,354,505
|3,354,505
|3,262
|3,262
|<ref>{{cite journal | journal=Genome Res | volume=13 | pages=2577-87 | date=2003 | author=Chen CY et al. | title=Comparative genome analysis of Vibrio vulnificus, a marine pathogen | url=http://www.genome.org/cgi/pmidlookup?view=long&pmid=14656965 | pmid=14656965 | doi = 10.1101/gr.1295503 }}</ref>
|<ref>Genome Res. 2003 Dec, 13(12):2577-87</ref>
|-
|-
|Unspecified
|Unspecified
Line 2,410: Line 2,410:
|1,857,073
|1,857,073
|1,697
|1,697
|<ref>{{cite journal | journal=Genome Res | volume=13 | pages=2577-87 | date=2003 | author=Chen CY et al. | title=Comparative genome analysis of Vibrio vulnificus, a marine pathogen | url=http://www.genome.org/cgi/pmidlookup?view=long&pmid=14656965 | pmid=14656965 | doi = 10.1101/gr.1295503 }}</ref>
|<ref>Genome Res. 2003 Dec, 13(12):2577-87</ref>
|-
|-
|Wigglesworthia glossinidia
|Wigglesworthia glossinidia
Line 2,417: Line 2,417:
|697,724
|697,724
|611
|611
|<ref>{{cite journal | journal=Nat Genet | volume=32 | pages=402-7 | date=2002 | author=Akman L et al. | title=Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia | url=http://dx.doi.org/10.1038/ng986 | pmid=12219091 | doi = 10.1038/ng986 }}</ref>
|<ref>Nat Genet. 2002 Nov, 32(3):402-7. Epub 2002 Sep 3</ref>
|-
|-
|Wolbachiaendo symbiont
|Wolbachiaendo symbiont
Line 2,424: Line 2,424:
|1,080,084
|1,080,084
|805
|805
|<ref>{{cite journal | journal=PLoS Biol | volume=3 | pages= | date=2005 | author=Foster J et al. | title=The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode | url=http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=15780005 | pmid=15780005 | doi = }}</ref>
|<ref>PLoS Biol. 2005 Apr, 3(4):e121. Epub 2005 Mar 29</ref>
|-
|-
|Wolbachia pipientis
|Wolbachia pipientis
Line 2,431: Line 2,431:
|1,267,782
|1,267,782
|1,195
|1,195
|<ref>{{cite journal | journal=PLoS Biol | volume=2 | pages= | date=2004 | author=Wu M et al. | title=Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements | url=http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=15024419 | pmid=15024419 | doi = }}</ref>
|<ref>PLoS Biol. 2004 Mar, 2(3):E69. Epub 2004 Mar 16</ref>
|-
|-
|Wolinella succino
|Wolinella succino
Line 2,438: Line 2,438:
|2,110,355
|2,110,355
|2,044
|2,044
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=100 | pages=11690-5 | date=2003 | author=Baar C et al. | title=Complete genome sequence and analysis of Wolinella succinogenes | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=14500908 | pmid=14500908 | doi = 10.1073/pnas.1932838100 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2003 Sep 30, 100(20):11690-5. Epub 2003 Sep 19</ref>
|-
|-
|[[Xanthomonas]] axonopodis
|[[Xanthomonas]] axonopodis
Line 2,445: Line 2,445:
|5,175,554
|5,175,554
|4,312
|4,312
|<ref>{{cite journal | journal=Nature | volume=417 | pages=459-63 | date=2002 | author=da Silva AC et al. | title=Comparison of the genomes of two Xanthomonas pathogens with differing host specificities | url=http://dx.doi.org/10.1038/417459a | pmid=12024217 | doi = 10.1038/417459a }}</ref>
|<ref>Nature. 2002 May 23, 417(6887):459-63</ref>
|-
|-
|Xanthomonas campestris
|Xanthomonas campestris
Line 2,452: Line 2,452:
|5,148,708
|5,148,708
|4,273
|4,273
|<ref>{{cite journal | journal=Genome Res | volume=15 | pages=757-67 | date=2005 | author=Qian W et al. | title=Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris | url=http://www.genome.org/cgi/pmidlookup?view=long&pmid=15899963 | pmid=15899963 | doi = 10.1101/gr.3378705 }}</ref>
|<ref>Genome Res. 2005 Jun, 15(6):757-67. Epub 2005 May 17</ref>
|-
|-
|Xanthomonas campestris
|Xanthomonas campestris
Line 2,459: Line 2,459:
|5,178,466
|5,178,466
|4,487
|4,487
|<ref>{{cite journal | journal=J Bacteriol | volume=187 | pages=7254-66 | date=2005 | author=Thieme F et al. | title=Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=16237009 | pmid=16237009 | doi = 10.1128/JB.187.21.7254-7266.2005 }}</ref>
|<ref>J Bacteriol. 2005 Nov, 187(21):7254-66</ref>
|-
|-
|Xanthomonas campestris
|Xanthomonas campestris
Line 2,466: Line 2,466:
|5,076,188
|5,076,188
|4,181
|4,181
|<ref>{{cite journal | journal=Nature | volume=417 | pages=459-63 | date=2002 | author=da Silva AC et al. | title=Comparison of the genomes of two Xanthomonas pathogens with differing host specificities | url=http://dx.doi.org/10.1038/417459a | pmid=12024217 | doi = 10.1038/417459a }}</ref>
|<ref>Nature. 2002 May 23, 417(6887):459-63</ref>
|-
|-
|Xanthomonas oryzae
|Xanthomonas oryzae
Line 2,473: Line 2,473:
|4,941,439
|4,941,439
|4,637
|4,637
|<ref>{{cite journal | journal=Nucleic Acids Res | volume=33 | pages=577-86 | date=2005 | author=Lee BM et al. | title=The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice | url=http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=15673718 | pmid=15673718 | doi = 10.1093/nar/gki206 }}</ref>
|<ref>Nucleic Acids Res. 2005 Jan 26, 33(2):577-86. Print 2005</ref>
|-
|-
|Xanthomonas oryzae
|Xanthomonas oryzae
Line 2,487: Line 2,487:
|2,679,306
|2,679,306
|2,766
|2,766
|<ref>{{cite journal | journal=Nature. | volume=406 | pages=151-7 | date=2000 | author=Setubal, J. C. | title=Related Resources | url= | pmid= | doi = 10.1038/35018003 }}</ref>
|<ref>Nature. 2000 Jul 13, 406(6792):151-7</ref>
|-
|-
|Xylella fastidiosa
|Xylella fastidiosa
Line 2,494: Line 2,494:
|2,519,802
|2,519,802
|2,034
|2,034
|<ref>{{cite journal | journal=J Bacteriol | volume=185 | pages=1018-26 | date=2003 | author=Van Sluys MA et al. | title=Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=12533478 | pmid=12533478 | doi = 10.1128/JB.185.3.1018-1026.2003 }}</ref>
|<ref>J Bacteriol. 2003 Feb, 185(3):1018-26</ref>
|-
|-
|[[Yersinia pestis]]
|[[Yersinia pestis]]
Line 2,501: Line 2,501:
|4,702,289
|4,702,289
|4,167
|4,167
|<ref>{{cite journal | journal=J Bacteriol | volume=188 | pages=4453-63 | date=2006 | author=Chain PS et al. | title=Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=16740952 | pmid=16740952 | doi = 10.1128/JB.00124-06 }}</ref>
|<ref>J Bacteriol. 2006 Jun, 188(12):4453-63</ref>
|-
|-
|Yersinia pestis
|Yersinia pestis
Line 2,508: Line 2,508:
|4,653,728
|4,653,728
|4,008
|4,008
|<ref>{{cite journal | journal=Nature | volume=413 | pages=523-7 | date=2001 | author=Parkhill J et al. | title=Genome sequence of Yersinia pestis, the causative agent of plague | url=http://dx.doi.org/10.1038/35097083 | pmid=11586360 | doi = 10.1038/35097083 }}</ref>
|<ref>Nature. 2001 Oct 4, 413(6855):523-7</ref>
|-
|-
|Yersinia pestis
|Yersinia pestis
Line 2,515: Line 2,515:
|4,600,755
|4,600,755
|4,090
|4,090
|<ref>{{cite journal | journal=J Bacteriol | volume=184 | pages=4601-11 | date=2002 | author=Deng W et al. | title=Genome sequence of Yersinia pestis KIM | url=http://jb.asm.org/cgi/pmidlookup?view=long&pmid=12142430 | pmid=12142430 | doi = 10.1128/JB.184.16.4601-4611.2002 }}</ref>
|<ref>J Bacteriol. 2002 Aug, 184(16):4601-11</ref>
|-
|-
|Yersinia pestis
|Yersinia pestis
Line 2,522: Line 2,522:
|4,595,065
|4,595,065
|3,895
|3,895
|<ref>{{cite journal | journal=DNA Res | volume=11 | pages=179-97 | date=2004 | author=Song Y et al. | title=Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans | url=http://dnaresearch.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=15368893 | pmid=15368893 | doi = 10.1093/dnares/11.3.179 }}</ref>
|<ref>DNA Res. 2004 Jun 30, 11(3):179-97</ref>
|-
|-
|Yersinia pseudotuberculosis
|Yersinia pseudotuberculosis
Line 2,529: Line 2,529:
|4,744,671
|4,744,671
|3,974
|3,974
|<ref>{{cite journal | journal=Proc Natl Acad Sci U S A | volume=101 | pages=13826-31 | date=2004 | author=Chain PS et al. | title=Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis | url=http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15358858 | pmid=15358858 | doi = 10.1073/pnas.0404012101 }}</ref>
|<ref>Proc Natl Acad Sci U S A. 2004 Sep 21, 101(38):13826-31. Epub 2004 Sep 9</ref>
|-
|-
|Zymomonas mobilis
|Zymomonas mobilis
Line 2,536: Line 2,536:
|2,056,416
|2,056,416
|1,998
|1,998
|<ref>{{cite journal | journal=Nat Biotechnol | volume=23 | pages=63-8 | date=2005 | author=Seo JS et al. | title=The genome sequence of the ethanologenic bacterium Zymomonas mobilis ZM4 | url=http://dx.doi.org/10.1038/nbt1045 | pmid=15592456 | doi = 10.1038/nbt1045 }}</ref>
|<ref>Nat Biotechnol. 2005 Jan, 23(1):63-8. Epub 2004 Dec 12</ref>
|}
|}
==See also==
==See also==

Revision as of 17:39, 26 April 2008

This list of sequenced eubacterial genomes contains all the eubacterial known to have publically available complete genome sequences that have been assembled, and placed in a public database on the WWW.


Sequenced Bacterial Genomes
Species Strain Type Base Pairs Genes Reference
Acidobacteria bacterium Ellin345 Acidobacteria 5,650,368 4,777 Unpublished
Acinetobacter species ADP1 Proteobacteria Gammaproteobacteria 3,598,621 3,325 [1]
Agrobacterium tumefaciens C58 Proteobacteria Alphaproteobacteria 2,841,581 2,722 [2]
Anabaena nostoc PCC7120 Cyanobacteria Nostocales 6,413,771 5,368 [3]
Anabaena variabilis ATCC29413 Cyanobacteria Nostocales 6,365,727 5,039 Unpublished
Anaeromyxobacter dehalogenans 2CP-C Proteobacteria delta-epsilon 5,013,479 4,346 Unpublished
Anaplasma marginale StMaries Proteobacteria Alphaproteobacteria 1,197,687 949 [4]
Anaplasma phagocytophilum HZ Proteobacteria Alphaproteobacteria 1,471,282 1,264 [5]
Aquifex aeolicus VF5 Aquificae Aquificae 1,551,335 1,522 [6]
Azoarcusspecies EbN1 Proteobacteria Betaproteobacteria 4,296,230 4,128 [7]
Bacillus anthracis Ames Firmicutes Bacilli 5,227,293 5,311 [8]
Bacillus anthracis Sterne Firmicutes Bacilli 5,228,663 5,287 Unpublished
Bacillus cereus ATCC10987 Firmicutes Bacilli 5,224,283 5,603 [9]
Bacillus cereus ATCC14579 Firmicutes Bacilli 5,411,809 5,234 [10]
Bacillus cereus ZK Firmicutes Bacilli 5,300,915 5,134 Unpublished
Bacillus clausii KSMK16 Firmicutes Bacilli 4,303,871 4,108 [11]
Bacillus halodurans C125 Firmicutes Bacilli 4,202,352 4,066 [12]
Bacillus licheniformis ATCC14580 Firmicutes Bacilli 4,222,334 4,152 [13]
Bacillus licheniformis Unspecified Firmicutes Bacilli 4,222,645 4,196 [14]
Bacillus licheniformis DSM13 Firmicutes Bacilli 4,222,645 4,196 [15]
Bacillus subtilis 168 Firmicutes Bacilli 4,214,630 4,106 [16]
Bacillus thuringiensis 9727 Firmicutes Bacilli 5,237,682 5,117 Unpublished
Bacteroides fragilis NCTC9343 Bacteroidetes/Chlorobi Bacteroidetes 5,205,140 4,260 [17]
Bacteroides fragilis YCH46 Bacteroidetes/Chlorobi Bacteroidetes 5,277,274 4,578 Unpublished
Bacteroides thetaiotaomicron VPI5482 Bacteroidetes/Chlorobi Bacteroidetes 6,260,361 4,778 [18]
Bartonella henselae Houston-1 Proteobacteria Alphaproteobacteria 1,931,047 1,612 [19]
Bartonella quintana Toulouse Proteobacteria Alphaproteobacteria 1,581,384 1,308 [20]
Baumannia cicadellinicola Hc Proteobacteria Gammaproteobacteria 686,194 595 Unpublished
Bdellovibrio bacteriovorus HD100 Proteobacteria delta-epsilon 3,782,950 3,583 [21]
Bifidobacterium longum NCC2705 Acidobacteria 2,256,640 1,727 [22]
Blochmannia floridanus Strain Proteobacteria Gammaproteobacteria 705,557 589 [23]
Blochmannia pennsylvanicus bpEN Proteobacteria Gammaproteobacteria 791,654 610 [24]
Bordetella bronchiseptica RB50 Proteobacteria Betaproteobacteria 5,339,179 5,006 Unpublished
Bordetella parapertussis 12822 Proteobacteria Betaproteobacteria 4,773,551 4,402 Unpublished
Bordetella pertussis TohamaI Proteobacteria Betaproteobacteria 4,086,189 3,806 Unpublished
Borrelia burgdorferi B31 Spirochaetes 910,724 850 [25]
Borrelia garinii PBi Spirochaetes 904,246 832 [26]
Bradyrhizobium japonicum USDA110 Proteobacteria Alphaproteobacteria 9,105,828 8,317 [27]
Brucella abortus 9-941 Proteobacteria Alphaproteobacteria 2,124,241 2,030 [28]
Unspecified Unspecified Proteobacteria Alphaproteobacteria 1,162,204 1,055 [29]
Brucella melitensis 16M Proteobacteria Alphaproteobacteria 2,117,144 2,059 [30]
Unspecified Unspecified Proteobacteria Alphaproteobacteria 1,177,787 1,139 [31]
Brucella melitensis 2308 Proteobacteria Alphaproteobacteria 1,156,948 1,164 [32]
Brucella melitensis Abortus Proteobacteria Alphaproteobacteria 2,121,359 2,186 [33]
Brucella Suis 1330 Proteobacteria Alphaproteobacteria 2,107,794 2,123 [34]
Unspecified Unspecified Proteobacteria Alphaproteobacteria 1,207,381 1,150 [35]
Buchnera aphidicola APS Proteobacteria Gammaproteobacteria 640,681 564 [36]
Buchnera aphidicola B Proteobacteria Gammaproteobacteria 615,980 504 [37]
Buchnera aphidicola Sg Proteobacteria Gammaproteobacteria 641,454 545 [38]
Burkholderia cenocepacia AU1054 Proteobacteria Betaproteobacteria 3,294,563 2,965 Unpublished
Unspecified Unspecified Proteobacteria Betaproteobacteria 2,788,459 2,472 Unpublished
Unspecified Unspecified Proteobacteria Betaproteobacteria 1,196,094 1,040 Unpublished
Burkholderia mallei ATCC23344 Proteobacteria Betaproteobacteria 3,510,148 2,996 Unpublished
Unspecified Unspecified Proteobacteria Betaproteobacteria 2,325,379 2,029 [39]
Burkholderia pseudomallei 1710b Proteobacteria Betaproteobacteria 4,126,292 3,736 Unpublished
Unspecified Unspecified Proteobacteria Betaproteobacteria 3,181,762 2,611 Unpublished
Burkholderia pseudomallei K96243 Proteobacteria Betaproteobacteria 4,074,542 3,460 [40]
Unspecified Unspecified Proteobacteria Betaproteobacteria 3,173,005 2,395 [41]
Burkholderia species 383 Proteobacteria Betaproteobacteria 3,694,126 3,334 Unpublished
Unspecified Unspecified Proteobacteria Betaproteobacteria 3,587,082 3,174 Unpublished
Unspecified Unspecified Proteobacteria Betaproteobacteria 1,395,069 1,209 Unpublished
Burkholderia thailandensis E264 Proteobacteria Betaproteobacteria 3,809,201 3,276 [42]
Unspecified Unspecified Proteobacteria Betaproteobacteria 2,914,771 2,358 [43]
Burkholderia xenovorans LB400 Proteobacteria Betaproteobacteria 4,895,836 4,430 Unpublished
Unspecified Unspecified Proteobacteria Betaproteobacteria 3,363,523 2,960 Unpublished
Unspecified Unspecified Proteobacteria Betaproteobacteria 1,471,779 1,312 Unpublished
Campylobacter jejuni NCTC11168 Proteobacteria delta-epsilon 1,641,481 1,643 [44]
Campylobacter jejuni RM1221 Proteobacteria delta-epsilon 1,777,831 1,838 [45]
Carboxydothermus hydrogenoformans Z2901 Firmicutes Clostridia 2,401,520 2,620 Unpublished
Carsonellaruddii PV Proteobacteria Gammaproteobacteria 159,662 182 [46]
Caulobactercresentus CB15 Proteobacteria Alphaproteobacteria 4,016,947 3,737 [47]
Chlamydia caviae GPIC Chlamydiae/Verrucomicrobia Chlamydiae 1,173,390 998 [48]
Chlamydia muridarum Nigg Chlamydiae/Verrucomicrobia Chlamydiae 1,072,950 904 [49]
Chlamydia trachomatis AHAR13 Chlamydiae/Verrucomicrobia Chlamydiae 1,044,459 911 [50]
Chlamydia trachomatis DUW Chlamydiae/Verrucomicrobia Chlamydiae 1,042,519 894 [51]
Chlamydophila abortus S26-3 Chlamydiae/Verrucomicrobia Chlamydiae 1,144,377 961 [52]
Chlamydophila felis FeC56 Chlamydiae/Verrucomicrobia Chlamydiae 1,166,239 1,005 Unpublished
Chlamydophila pneumoniae AR39 Chlamydiae/Verrucomicrobia Chlamydiae 1,229,853 1,110 [53]
Chlamydophila pneumoniae CWL029 Chlamydiae/Verrucomicrobia Chlamydiae 1,230,230 1,052 [54]
Chlamydophila pneumoniae J138 Chlamydiae/Verrucomicrobia Chlamydiae 1,226,565 1,069 [55]
Chlamydophila pneumoniae TW183 Chlamydiae/Verrucomicrobia Chlamydiae 1,225,935 1,113 Unpublished
Chlorobium chlorochromatii CaD3 Bacteroidetes/Chlorobi Chlorobi 2,572,079 2,002 Unpublished
Chlorobium tepidum TLS Bacteroidetes/Chlorobi Chlorobi 2,154,946 2,255 [56]
Chromobacterium violaceum ATCC12472 Proteobacteria Betaproteobacteria 4,751,080 4,407 [57]
Chromohalobacter salexigens DSM3043 Proteobacteria Gammaproteobacteria 3,696,649 3,298 Unpublished
Clostridium acetobutylicum ATCC824 Firmicutes Clostridia 3,940,880 3,672 [58]
Clostridium difficile QCD-32g58 Firmicutes Clostridia 3,840,681 Unpublished
Clostridium perfringens 13 Firmicutes Clostridia 3,031,430 2,660 [59]
Clostridium tetani E88 Firmicutes Clostridia 2,799,251 2,373 [60]
Colwellia psychrerythraea 34H Proteobacteria Gammaproteobacteria 5,373,180 4,910 Unpublished
Corynebacterium diphtheriae NCTC13129 Acidobacteria 2,488,635 2,320 [61]
Corynebacterium efficiens YS314 Acidobacteria 3,147,090 2,942 [62]
Corynebacterium glutamicum ATCC13032 Acidobacteria 3,309,401 3,099 Unpublished
Unspecified Unspecified Acidobacteria 3,282,708 3,058 [63]
Corynebacterium jeikeium K411 Acidobacteria 2,462,499 2,104 [64]
Coxiella burnetii RSA493 Proteobacteria Gammaproteobacteria 1,995,281 2,016 [65]
Cyanobacteria bacterium YellowstoneA Cyanobacteria Chroococcales 2,932,766 2,760 [66]
Cyanobacteria bacterium YellowstoneB Cyanobacteria Chroococcales 3,046,682 2,862 [67]
Cytophaga hutchinsonii ATCC33406 Bacteroidetes/Chlorobi Chlorobi 4,433,218 Unpublished
Dechloromonas aromatica RCB Proteobacteria Betaproteobacteria 4,501,104 4,171 Unpublished
Dehalococcoides etheno 195 Chloroflexi Dehalococcoidetes 1,469,720 1,580 [68]
Dehalococcoides species CBDB1 Chloroflexi Dehalococcoidetes 1,395,502 1,458 [69]
Deinococcus geothermalis DSM11300 Deinococcus-Thermus Deinococci 2,467,205 2,335 Unpublished
Deinococcus radiodurans R1 Deinococcus-Thermus Deinococci 2,648,638 2,579 [70]
Unspecified Unspecified Deinococcus-Thermus Deinococci 412,348 357 [71]
Desulfitobacterium hafniense Y51 Firmicutes Clostridia 5,727,534 5,060 [72]
Desulfotalea psychrophila LSv54 Proteobacteria delta-epsilon 3,523,383 3,118 Unpublished
Desulfovibrio desulfuricans G20 Proteobacteria delta-epsilon 3,730,232 3,775 Unpublished
Desulfovibrio vulgaris Hildenborough Proteobacteria delta-epsilon 3,570,858 3,379 [73]
Ehrlichia canis Jake Proteobacteria Alphaproteobacteria 1,315,030 925 Unpublished
Ehrlichia chaffeensis Arkansas Proteobacteria Alphaproteobacteria 1,176,248 1,105 [74]
Ehrlichia ruminantium Gardel Proteobacteria Alphaproteobacteria 1,499,920 950 Unpublished
Ehrlichia ruminantium Welgevonden Proteobacteria Alphaproteobacteria 1,512,977 958 Unpublished
Unspecified Unspecified Proteobacteria Alphaproteobacteria 1,516,355 920 [75]
Enterococcus faecalis V583 Firmicutes Bacilli 3,218,031 3,113 [76]
Erwinia carotovora SCRI1043 Proteobacteria Gammaproteobacteria 5,064,019 4,492 Unpublished
Erythrobacter litoralis HTCC2594 Proteobacteria Alphaproteobacteria 3,052,398 3,011 Unpublished
Escherichia coli 536 Proteobacteria Gammaproteobacteria 4,938,920 4,685 Unpublished
Escherichia coli CFT073 Proteobacteria Gammaproteobacteria 5,231,428 5,379 [77]
Escherichia coli K-12 Proteobacteria Gammaproteobacteria 4,639,675 4,331 [78]
Unspecified Unspecified Proteobacteria Gammaproteobacteria 4,646,332 4,337 [79]
Escherichia coli O157:H7 Proteobacteria Gammaproteobacteria 5,528,445 5,349 [80]
Unspecified Unspecified Proteobacteria Gammaproteobacteria 5,498,450 5,361 [81]
Escherichia coli UTI89 Proteobacteria Gammaproteobacteria 5,065,741 5,066 Unpublished
Francisella tularensis LVS Proteobacteria Gammaproteobacteria 1,895,994 1,967 Unpublished
Francisella tularensis SCHUS4 Proteobacteria Gammaproteobacteria 1,892,819 1,804 [82]
Frankia species CcI3 Acidobacteria 5,433,628 4,499 Unpublished
Fusobacterium nucleatum ATCC25586 Fusobacteria Fusobacteria 2,174,500 2,067 [83]
Geobacillus kaustophilus HTA426 Firmicutes Bacilli 3,544,776 3,498 [84]
Geobacter metallireducens GS15 Proteobacteria delta-epsilon 3,997,420 3,519 Unpublished
Geobacter sulfurreducens PCA Proteobacteria delta-epsilon 3,814,139 3,447 [85]
Gloeobacter violaceus PCC7421 Cyanobacteria Gloeobacteria 4,659,019 4,430 [86]
Gluconobacter oxydans 621H Proteobacteria Alphaproteobacteria 2,702,173 2,432 [87]
Haemophilusducreyi 3500HP Proteobacteria Gammaproteobacteria 1,698,955 1,717 Unpublished
Haemophilus influenzae 86-028NP Proteobacteria Gammaproteobacteria 1,913,428 1,792 [88]
Haemophilus influenzae Rd Proteobacteria Gammaproteobacteria 1,830,138 1,709 [89]
Hahella chejuensis KCTC2396 Proteobacteria Gammaproteobacteria 7,215,267 6,782 [90]
Helicobacter hepaticus ATCC51449 Proteobacteria delta-epsilon 1,799,146 1,875 [91]
Helicobacter pylori 26695 Proteobacteria delta-epsilon 1,667,867 1,566 [92]
Helicobacter pylori HPAG1 Proteobacteria delta-epsilon 1,596,366 1,536 Unpublished
Helicobacter pylori J99 Proteobacteria delta-epsilon 1,643,831 1,491 [93]
Idiomarina loihiensis L2TR Proteobacteria Gammaproteobacteria 2,839,318 2,628 [94]
Jannaschia species CCS1 Proteobacteria Alphaproteobacteria 4,317,977 4,212 Unpublished
Lactobacillus acidophilus NCFM Firmicutes Bacilli 1,993,564 1,864 [95]
Lactobacillus delbrueckii bulgaricus Firmicutes Bacilli 1,864,998 2,096 Unpublished
Lactobacillus johnsonii NCC533 Firmicutes Bacilli 1,992,676 1,821 [96]
Lactobacillus plantarum WCFS1 Firmicutes Bacilli 3,308,274 3,051 [97]
Lactobacillus sakei 23K Firmicutes Bacilli 1,884,661 1,885 Unpublished
Lactobacillus sakei sakei23K Firmicutes Bacilli 1,884,661 1,885 Unpublished
Lactobacillus salivarius UCC118 Firmicutes Bacilli 1,827,111 1,717 Unpublished
Lactococcus lactis IL1403 Firmicutes Bacilli 2,365,589 2,266 [98]
Lawsonia intracellularis PHEMN1-00 Proteobacteria delta-epsilon 27,048 29 Unpublished
Unspecified Unspecified Proteobacteria delta-epsilon 39,794 24 Unpublished
Unspecified Unspecified Proteobacteria delta-epsilon 194,553 104 Unpublished
Unspecified Unspecified Proteobacteria delta-epsilon 1,457,619 1,187 Unpublished
Legionella pneumophila Lens Proteobacteria Gammaproteobacteria 3,345,687 2,947 [99]
Legionella pneumophila Paris Proteobacteria Gammaproteobacteria 3,503,610 3,082 [100]
Legionella pneumophila Philadelphia1 Proteobacteria Gammaproteobacteria 3,397,754 2,942 Unpublished
Leifsonia xyli CTCB07 Acidobacteria 2,584,158 2,030 Unpublished
Leptospira interrogans 56601 Spirochaetes 4,332,241 4,358 [101]
Unspecified Unspecified Spirochaetes 358,943 367 [102]
Leptospira interrogans FiocruzL1130 Spirochaetes 4,277,185 3,394 [103]
Unspecified Unspecified Spirochaetes 350,181 264 [104]
Listeria innocua Clip11262 Firmicutes Bacilli 3,011,208 2,981 [105]
Listeria monocyto 4b Firmicutes Bacilli 2,905,187 2,821 [106]
Listeria monocyto EGD Firmicutes Bacilli 2,944,528 2,855 [107]
Magnetospirillum magneticum AMB1 Proteobacteria Alphaproteobacteria 4,967,148 4,559 [108]
Mannheimia succiniciproducens MBEL55E Proteobacteria Gammaproteobacteria 2,314,078 2,384 Unpublished
Mesoplasma florum L1 Firmicutes Mollicutes 793,224 683 Unpublished
Mesorhizobium loti MAFF303099 Proteobacteria Alphaproteobacteria 7,036,071 6,752 [109]
Methylobacillus flagellatus KT Proteobacteria Betaproteobacteria 2,971,517 2,753 Unpublished
Methylococcus capsulatus Bath Proteobacteria Gammaproteobacteria 3,304,561 2,960 [110]
Moorella thermoacetica ATCC39073 Firmicutes Clostridia 2,628,784 2,465 Unpublished
Mycobacterium avium k10 Acidobacteria 4,829,781 4,350 [111]
Mycobacterium bovis AF212297 Acidobacteria 4,345,492 3,953 [112]
Mycobacterium leprae TN Acidobacteria 3,268,203 2,720 [113]
Mycobacterium tuberculosis CDC1551 Acidobacteria 4,403,837 4,189 Unpublished
Mycobacterium tuberculosis H37Rv Acidobacteria 4,411,532 3,999 [114]
Mycoplasma capricolum ATCC27343 Firmicutes Mollicutes 1,010,023 812 Unpublished
Mycoplasma gallisepticum R Firmicutes Mollicutes 996,422 726 [115]
Mycoplasma genitalium G37 Firmicutes Mollicutes 580,076 476 [116]
Mycoplasma hyopneumoniae 232 Firmicutes Mollicutes 892,758 691 [117]
Mycoplasma hyopneumoniae 7448 Firmicutes Mollicutes 920,079 663 [118]
Mycoplasma hyopneumoniae J Firmicutes Mollicutes 897,405 665 [119]
Mycoplasma mobile 163K Firmicutes Mollicutes 777,079 635 [120]
Mycoplasma mycoides SC Firmicutes Mollicutes 1,211,703 1,016 [121]
Mycoplasma penetrans HF2 Firmicutes Mollicutes 1,358,633 1,037 [122]
Mycoplasma pneumoniae M129 Firmicutes Mollicutes 816,394 688 [123]
Mycoplasma pulmonis UAB Firmicutes Mollicutes 963,879 782 [124]
Mycoplasma synoviae 53 Firmicutes Mollicutes 799,476 672 [125]
Myxococcus xanthus DK1622 Proteobacteria delta-epsilon 9,139,763 7,331 Unpublished
Neisseria gonorrhoeae FA1090 Proteobacteria Betaproteobacteria 2,153,922 2,002 Unpublished
Neisseria meningitidis A Proteobacteria Betaproteobacteria 2,184,406 2,121 [126]
Neisseria meningitidis B Proteobacteria Betaproteobacteria 2,272,360 2,063 [127]
Neorickettsia sennetsu Miyayama Proteobacteria Alphaproteobacteria 859,006 932 [128]
Nitrobacter hamburgensis X14 Proteobacteria Alphaproteobacteria 4,406,967 3,804 Unpublished
Nitrobacter winogradskyi Nb255 Proteobacteria Alphaproteobacteria 3,402,093 3,122 Unpublished
Nitrosococcus oceani ATCC19707 Proteobacteria Gammaproteobacteria 3,481,691 2,976 Unpublished
Nitrosomonas europaea Schmidt Proteobacteria Betaproteobacteria 2,812,094 2,574 [129]
Nitrosospira multiformis ATCC25196 Proteobacteria Betaproteobacteria 3,184,243 2,757 Unpublished
Nocardia farcinica IFM10152 Acidobacteria 6,021,225 5,683 [130]
Novosphingobium aromaticivorans DSM12444 Proteobacteria Alphaproteobacteria 3,561,584 3,324 Unpublished
Oceanobacillus iheyensis HTE831 Firmicutes Bacilli 3,630,528 3,496 [131]
Parachlamy diaspecies UWE25 Chlamydiae/Verrucomicrobia Chlamydiae 2,414,465 2,031 [132]
Pasteurella multocida Pm70 Proteobacteria Gammaproteobacteria 2,257,487 2,014 [133]
Pelagibacter ubique HTCC1062 Proteobacteria Alphaproteobacteria 1,308,759 1,354 [134]
Pelobacter carbinolicus DSM2380 Proteobacteria delta-epsilon 3,665,893 3,119 Unpublished
Pelodictyon luteolum DSM273 Bacteroidetes/Chlorobi Chlorobi 2,364,842 2,083 Unpublished
Photobacterium profundum SS9 Proteobacteria Gammaproteobacteria 4,085,304 3,416 Unpublished
Unspecified Unspecified Proteobacteria Gammaproteobacteria 2,237,943 1,997 Unpublished
Photorhabdus luminescens laumondiiTTO1 Proteobacteria Gammaproteobacteria 5,688,987 4,905 Unpublished
Phytoplas maasteris AYWB Firmicutes Mollicutes 706,569 671 Unpublished
Phytoplas maasteris OY Firmicutes Mollicutes 860,631 754 [135]
Polaromonas species JS666 Proteobacteria Betaproteobacteria 5,200,264 4,817 Unpublished
Porphyromonas gingivalis W83 Bacteroidetes/Chlorobi Bacteroidetes 2,343,476 1,909 [136]
Prochlorococcus marinus MED4 Cyanobacteria Prochlorales 1,657,990 1,716 [137]
Prochlorococcus marinus MIT9312 Cyanobacteria Prochlorales 1,709,204 1,809 Unpublished
Prochlorococcus marinus MIT9313 Cyanobacteria Prochlorales 2,410,873 2,273 [138]
Prochlorococcus marinus NATL2A Cyanobacteria Prochlorales 1,842,899 1,890 Unpublished
Prochlorococcus marinus SS120 Cyanobacteria Prochlorales 1,751,080 1,882 [139]
Propionibacterium acnes KPA171202 Acidobacteria 2,560,265 2,297 Unpublished
Pseudoalteromonas haloplanktis TAC125 Proteobacteria Gammaproteobacteria 3,214,944 2,941 [140]
Unspecified Unspecified Proteobacteria Gammaproteobacteria 635,328 546 [141]
Pseudomonas aeruginosa PAO1 Proteobacteria Gammaproteobacteria 6,264,403 5,566 [142]
Pseudomonas entomophila L48 Proteobacteria Gammaproteobacteria 5,888,780 5,168 Unpublished
Pseudomonas fluorescens Pf-5 Proteobacteria Gammaproteobacteria 7,074,893 6,137 [143]
Pseudomonas fluorescens PfO-1 Proteobacteria Gammaproteobacteria 6,438,405 5,736 Unpublished
Pseudomonas putida KT2440 Proteobacteria Gammaproteobacteria 6,181,863 5,350 [144]
Pseudomonas syringae B728a Proteobacteria Gammaproteobacteria 6,093,698 5,136 [145]
Pseudomonas syringae DC3000 Proteobacteria Gammaproteobacteria 6,397,126 5,470 [146]
Pseudomonas syringae phaseolicola1448A Proteobacteria Gammaproteobacteria 5,928,787 4,983 Unpublished
Psychrobacter arcticum 273-4 Proteobacteria Gammaproteobacteria 2,650,701 2,147 Unpublished
Psychrobacter cryohalolentis K5 Proteobacteria Gammaproteobacteria 41,221 44 Unpublished
Unspecified Unspecified Proteobacteria Gammaproteobacteria 3,059,876 2,467 Unpublished
Ralstonia eutropha JMP134 Proteobacteria Betaproteobacteria 3,806,533 3,439 Unpublished
Unspecified Unspecified Proteobacteria Betaproteobacteria 2,726,152 2,407 Unpublished
Ralstonia metallidurans CH34 Proteobacteria Betaproteobacteria 3,928,089 3,601 Unpublished
Unspecified Unspecified Proteobacteria Betaproteobacteria 2,580,084 2,313 Unpublished
Ralstonia solanacearum GMI1000 Proteobacteria Betaproteobacteria 3,716,413 3,441 [147]
Unspecified Unspecified Proteobacteria Betaproteobacteria 2,094,509 1,679 [148]
Rhizobium etli CFN42 Proteobacteria Alphaproteobacteria 4,381,608 4,067 [149]
Rhizobium leguminosarum viciae3841 Proteobacteria Alphaproteobacteria 7,751,309 4,746 Unpublished
Rhodobacter sphaeroides 2.4.1 Proteobacteria Alphaproteobacteria 3,188,609 3,022 Unpublished
Unspecified Unspecified Proteobacteria Alphaproteobacteria 943,016 835 Unpublished
Rhodoferax ferrireducens DSM15236 Proteobacteria Betaproteobacteria 4,712,337 4,170 Unpublished
Rhodopirellula baltica strain1 Planctomycetes Planctomycetacia 7,145,576 7,325 Unpublished
Rhodopseudomonas palustris BisB18 Proteobacteria Alphaproteobacteria 5,513,844 4,886 Unpublished
Rhodopseudomonas palustris BisB5 Proteobacteria Alphaproteobacteria 4,892,717 4,397 Unpublished
Rhodopseudomonas palustris CGA009 Proteobacteria Alphaproteobacteria 5,459,213 4,833 [150]
Rhodopseudomonas palustris HaA2 Proteobacteria Alphaproteobacteria 5,331,656 4,683 Unpublished
Rhodospirillum rubrum ATCC11170 Proteobacteria Alphaproteobacteria 4,352,825 3,791 Unpublished
Rickettsia bellii RML369-C Proteobacteria Alphaproteobacteria 1,522,076 1,429 Unpublished
Rickettsia conorii Malish7 Proteobacteria Alphaproteobacteria 1,268,755 1,374 [151]
Rickettsia felis URRWXCal2 Proteobacteria Alphaproteobacteria 1,485,148 1,400 [152]
Rickettsia prowazekii Madrid-E Proteobacteria Alphaproteobacteria 1,111,523 834 [153]
Rickettsia typhi Wilmington Proteobacteria Alphaproteobacteria 1,111,496 838 [154]
Rubrobacter xylanophilus DSM9941 Acidobacteria 3,225,748 3,140 Unpublished
Saccharophagus degradans Feb-40 Proteobacteria Gammaproteobacteria 5,057,531 4,008 Unpublished
Salinibacter ruber DSM13855 Bacteroidetes/Chlorobi Bacteroidetes 3,551,823 2,801 [155]
Salmonella enterica ATCC9150 Proteobacteria Gammaproteobacteria 4,585,229 4,093 [156]
Salmonella enterica SCB67 Proteobacteria Gammaproteobacteria 4,755,700 4,445 [157]
Salmonella enterica Ty2 Proteobacteria Gammaproteobacteria 4,791,961 4,323 [158]
Salmonella enterica typhiCT18 Proteobacteria Gammaproteobacteria 4,809,037 4,600 [159]
Salmonella typhimurium LT2 Proteobacteria Gammaproteobacteria 4,857,432 4,452 [160]
Shewanella denitrificans OS217 Proteobacteria Gammaproteobacteria 4,545,906 3,754 Unpublished
Shewanella oneidensis MR1 Proteobacteria Gammaproteobacteria 4,969,803 4,630 [161]
Shigella boydii Sb227 Proteobacteria Gammaproteobacteria 4,519,823 4,142 [162]
Shigella dysenteriae Sd197 Proteobacteria Gammaproteobacteria 4,369,232 4,277 [163]
Shigella flexneri 2457T Proteobacteria Gammaproteobacteria 4,599,354 4,073 [164]
Shigella flexneri 2a301 Proteobacteria Gammaproteobacteria 4,607,203 4,436 [165]
Shigella sonnei Ss046 Proteobacteria Gammaproteobacteria 4,825,265 4,224 [166]
Silicibacter pomeroyi DSS3 Proteobacteria Alphaproteobacteria 4,109,442 3,810 [167]
Silicibacter species TM1040 Proteobacteria Alphaproteobacteria 3,200,938 3,030 Unpublished
Sinorhizobium meliloti 1021 Proteobacteria Alphaproteobacteria 3,654,135 3,341 [168]
Sodalis glossinidius morsitans Proteobacteria Gammaproteobacteria 4,171,146 2,432 [169]
Sphingopyxis alaskensis RB2256 Proteobacteria Alphaproteobacteria 3,345,170 3,165 Unpublished
Staphylococcus aureus COL Firmicutes Bacilli 2,809,422 2,673 [170]
Staphylococcus aureus MRSA252 Firmicutes Bacilli 2,902,619 2,744 [171]
Staphylococcus aureus MSSA476 Firmicutes Bacilli 2,799,802 2,619 [172]
Staphylococcus aureus Mu50 Firmicutes Bacilli 2,878,529 2,699 [173]
Staphylococcus aureus MW2 Firmicutes Bacilli 2,820,462 2,632 [174]
Staphylococcus aureus N315 Firmicutes Bacilli 2,814,816 2,593 [175]
Staphylococcus aureus NCTC8325 Firmicutes Bacilli 2,821,361 2,892 Unpublished
Staphylococcus aureus RF122 Firmicutes Bacilli 2,742,531 2,589 Unpublished
Staphylococcus aureus USA300 Firmicutes Bacilli 2,872,769 2,560 [176]
Staphylococcus epidermidis ATCC12228 Firmicutes Bacilli 2,499,279 2,419 Unpublished
Staphylococcusepidermidis RP62A Firmicutes Bacilli 2,616,530 2,494 [177]
Staphylococcus haemolyticus JCSC1435 Firmicutes Bacilli 2,685,015 2,678 [178]
Staphylococcus saprophyticus saprophyticus Firmicutes Bacilli 2,516,575 2,446 [179]
Streptococcus agalactiae A909 Firmicutes Bacilli 2,127,839 1,996 [180]
Streptococcus agalactiae NEM316 Firmicutes Bacilli 2,211,485 2,134 [181]
Streptococcus agalactiae V2603 Firmicutes Bacilli 2,160,267 2,124 [182]
Streptococcus mutans UAB159 Firmicutes Bacilli 2,030,921 1,960 [183]
Streptococcus pneumoniae R6 Firmicutes Bacilli 2,038,615 2,043 [184]
Streptococcus pneumoniae TIGR4 Firmicutes Bacilli 2,160,842 2,125 [185]
Streptococcus pyo M5Manfredo Firmicutes Bacilli 1,841,271 Unpublished
Streptococcus pyo MGAS10270 Firmicutes Bacilli 1,928,252 1,987 [186]
Streptococcus pyo MGAS10394 Firmicutes Bacilli 1,899,877 1,886 [187]
Streptococcus pyo MGAS10750 Firmicutes Bacilli 1,937,111 1,979 [188]
Streptococcus pyo MGAS2096 Firmicutes Bacilli 1,860,355 1,898 [189]
Streptococcus pyo MGAS315 Firmicutes Bacilli 1,900,521 1,865 [190]
Streptococcus pyo MGAS5005 Firmicutes Bacilli 1,838,554 1,865 [191]
Streptococcus pyo MGAS6180 Firmicutes Bacilli 1,897,573 1,894 [192]
Streptococcus pyo MGAS8232 Firmicutes Bacilli 1,895,017 1,845 [193]
Streptococcus pyo MGAS9429 Firmicutes Bacilli 1,836,467 1,877 [194]
Streptococcus pyo SF370 Firmicutes Bacilli 1,852,441 1,696 [195]
Streptococcus pyo SSI1 Firmicutes Bacilli 1,894,275 1,861 [196]
Streptococcus thermophilus CNRZ1066 Firmicutes Bacilli 1,796,226 1,915 [197]
Streptococcus thermophilus LMG18311 Firmicutes Bacilli 1,796,846 1,889 [198]
Streptomyces avermitilis MA4680 Acidobacteria 9,025,608 7,577 [199]
Streptomyces coelicolor A3 Acidobacteria 8,667,507 7,825 [200]
Symbiobacterium thermophilum Strain Acidobacteria 3,566,135 3,337 [201]
Synechococcus elongatus PCC6301 Cyanobacteria Chroococcales 2,696,255 2,525 Unpublished
Synechococcus elongatus PCC7942 Cyanobacteria Chroococcales 2,695,903 2,611 Unpublished
Synechococcus sp WH8102 Cyanobacteria Chroococcales 2,434,428 2,526 [202]
Synechococcus species CC9605 Cyanobacteria Chroococcales 2,510,659 2,638 Unpublished
Synechococcus species CC9902 Cyanobacteria Chroococcales 2,234,828 2,304 Unpublished
Synechocystis species PCC6803 Cyanobacteria Chroococcales 3,573,470 3,167 [203]
Syntrophus aciditrophicus SB Proteobacteria delta-epsilon 3,179,300 3,168 Unpublished
Thermoanaerobacter tengcongensis MB4T Firmicutes Clostridia 2,689,445 2,588 Unpublished
Thermobifida fusca YX Acidobacteria 3,642,249 3,110 Unpublished
Thermosynechococcus elongatus bp1 Cyanobacteria Chroococcales 2,593,857 2,475 Unpublished
Thermotoga maritima MSB8 Thermotogae 1,860,725 1,846 [204]
Thermus thermophilus HB27 Deinococcus-Thermus Deinococci 1,894,877 1,982 [205]
Thermus thermophilus HB8 Deinococcus-Thermus Deinococci 1,849,742 1,973 Unpublished
Thiobacillus denitrificans ATCC25259 Proteobacteria Betaproteobacteria 2,909,809 2,827 Unpublished
Thiomicrospira crunogena XCL2 Proteobacteria Gammaproteobacteria 2,427,734 2,192 Unpublished
Thiomicrospira denitrificans ATCC33889 Proteobacteria delta-epsilon 2,201,561 2,097 Unpublished
Treponema denticola ATCC35405 Spirochaetes 2,843,201 2,767 [206]
Treponema pallidum Nichols Spirochaetes 1,138,011 1,031 [207]
Tropheryma whippelii TW0827 Acidobacteria 925,938 784 Unpublished
Tropheryma whippelii Twist Acidobacteria 927,303 808 [208]
Ureaplasma urealyticum serovar3 Firmicutes Mollicutes 751,719 611 [209]
Vibrio cholerae N16961 Proteobacteria Gammaproteobacteria 2,961,149 2,736 [210]
Unspecified Unspecified Proteobacteria Gammaproteobacteria 1,072,315 1,092 [211]
Vibrio fischeri ES114 Proteobacteria Gammaproteobacteria 2,906,179 2,575 [212]
Unspecified Unspecified Proteobacteria Gammaproteobacteria 1,332,022 1,172 [213]
Vibrio parahaemolyticus RIMD2210633 Proteobacteria Gammaproteobacteria 3,288,558 3,080 [214]
Unspecified Unspecified Proteobacteria Gammaproteobacteria 1,877,212 1,752 [215]
Vibrio vulnificus CMCP6 Proteobacteria Gammaproteobacteria 3,281,944 2,973 [216]
Unspecified Unspecified Proteobacteria Gammaproteobacteria 1,844,853 1,565 [217]
Vibriovulnificus YJ016 Proteobacteria Gammaproteobacteria 3,354,505 3,262 [218]
Unspecified Unspecified Proteobacteria Gammaproteobacteria 1,857,073 1,697 [219]
Wigglesworthia glossinidia Strain Proteobacteria Gammaproteobacteria 697,724 611 [220]
Wolbachiaendo symbiont TRS Proteobacteria Alphaproteobacteria 1,080,084 805 [221]
Wolbachia pipientis wMel Proteobacteria Alphaproteobacteria 1,267,782 1,195 [222]
Wolinella succino DSMZ1740 Proteobacteria delta-epsilon 2,110,355 2,044 [223]
Xanthomonas axonopodis citri306 Proteobacteria Gammaproteobacteria 5,175,554 4,312 [224]
Xanthomonas campestris 8004 Proteobacteria Gammaproteobacteria 5,148,708 4,273 [225]
Xanthomonas campestris 8510 Proteobacteria Gammaproteobacteria 5,178,466 4,487 [226]
Xanthomonas campestris ATCC33913 Proteobacteria Gammaproteobacteria 5,076,188 4,181 [227]
Xanthomonas oryzae KACC10331 Proteobacteria Gammaproteobacteria 4,941,439 4,637 [228]
Xanthomonas oryzae MAFF311018 Proteobacteria Gammaproteobacteria 4,940,217 4,372 Unpublished
Xylella fastidiosa 9a5c Proteobacteria Gammaproteobacteria 2,679,306 2,766 [229]
Xylella fastidiosa Temecula1 Proteobacteria Gammaproteobacteria 2,519,802 2,034 [230]
Yersinia pestis Antiqua Proteobacteria Gammaproteobacteria 4,702,289 4,167 [231]
Yersinia pestis CO-92BiovarOrientalis Proteobacteria Gammaproteobacteria 4,653,728 4,008 [232]
Yersinia pestis KIM Proteobacteria Gammaproteobacteria 4,600,755 4,090 [233]
Yersinia pestis Mediaevails Proteobacteria Gammaproteobacteria 4,595,065 3,895 [234]
Yersinia pseudotuberculosis IP32953 Proteobacteria Gammaproteobacteria 4,744,671 3,974 [235]
Zymomonas mobilis ZM4 Proteobacteria Alphaproteobacteria 2,056,416 1,998 [236]

See also

References

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External links

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