Balding–Nichols model: Difference between revisions

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In [[population genetics]], the '''Balding–Nichols model''' is a statistical description of the [[allele frequency|allele frequencies]] in the components of a sub-divided population. With background allele frequency ''p'' the allele frequencies, in sub-populations separated by [[Sewall Wright|Wright's]] ''F<sub>ST</sub>'' ''F'', are distributed according to independent draws from
In [[population genetics]], the '''Balding–Nichols model''' is a statistical description of the [[allele frequency|allele frequencies]] in the components of a sub-divided population.<ref>{{cite journal |last1=Balding |first1=DJ |last2=Nichols |first2=RA |year=1995 |title=A method for quantifying differentiation between populations at multi-allelic loci and its implications for investigating identity and paternity. |journal=Genetica |volume=96 |pages=3-12 |publisher=Springer |doi=10.1007/BF01441146 |url=http://www.springerlink.com/content/u27738g2626601p1/ |pmid=7607457 }}</ref> With background allele frequency ''p'' the allele frequencies, in sub-populations separated by [[Sewall Wright|Wright's]] ''F<sub>ST</sub>'' ''F'', are distributed according to independent draws from


:<math>B\left(\frac{1-F}{F}p,\frac{1-F}{F}(1-p)\right)</math>
:<math>B\left(\frac{1-F}{F}p,\frac{1-F}{F}(1-p)\right)</math>

Revision as of 11:09, 3 July 2012

Balding-Nichols
Parameters (real)
(real)
For ease of notation, let
, and
Support
PDF
CDF
Mean
Median no closed form
Mode
Variance
Skewness
MGF
CF

In population genetics, the Balding–Nichols model is a statistical description of the allele frequencies in the components of a sub-divided population.[1] With background allele frequency p the allele frequencies, in sub-populations separated by Wright's FST F, are distributed according to independent draws from

where B is the Beta distribution. This distribution has mean p and variance Fp(1 – p).[2]

The model is due to David Balding and Richard Nichols and is widely used in the forensic analysis of DNA profiles and in population models for genetic epidemiology.

References

  1. ^ Balding, DJ; Nichols, RA (1995). "A method for quantifying differentiation between populations at multi-allelic loci and its implications for investigating identity and paternity". Genetica. 96. Springer: 3–12. doi:10.1007/BF01441146. PMID 7607457.
  2. ^ Alkes L. Price, Nick J. Patterson, Robert M. Plenge, Michael E. Weinblatt, Nancy A. Shadick & David Reich (2006). "Principal components analysis corrects for stratification in genome-wide association studies" (PDF). Nature Genetics. 38 (8): 904–909. doi:10.1038/ng1847. PMID 16862161.{{cite journal}}: CS1 maint: multiple names: authors list (link)