Draft:Haplogroup O-M176: Difference between revisions

From Wikipedia, the free encyclopedia
Browse history interactively
← Previous editNext edit →
Content deleted Content added
VisualWikitext
Removing duplicate sources
Line 167: Line 167:
===Works Cited===
===Works Cited===
{{reflist|refs=
{{reflist|refs=
<ref name="Jin2003">{{cite journal|doi=10.1007/s00439-003-1019-0}}</ref>
<ref name="Jin2003">[http://www.springerlink.com/content/b7c224nfknj90ncy/fulltext.html Han-Jun Jin, Kyoung-Don Kwak, Michael F. Hammer, Yutaka Nakahori, Toshikatsu Shinka, Ju-Won Lee, Feng Jin, Xuming Jia, Chris Tyler-Smith and Wook Kim, "Y-chromosomal DNA haplogroups and their implications for the dual origins of the Koreans," ''Human Genetics'' (2003)]</ref>
<ref name="Hammer2006">Michael F. Hammer, Tatiana M. Karafet, Hwayong Park ''et al.'', "Dual origins of the Japanese: common ground for hunter-gatherer and farmer Y chromosomes," ''Journal of Human Genetics'' (2006) 51:47–58</ref>
<ref name="Hammer2006">{{cite journal|doi=10.1007/s10038-005-0322-0|title=Dual origins of the Japanese: Common ground for hunter-gatherer and farmer Y chromosomes|year=2005|last1=Hammer|first1=Michael F.|last2=Karafet|first2=Tatiana M.|last3=Park|first3=Hwayong|last4=Omoto|first4=Keiichi|last5=Harihara|first5=Shinji|last6=Stoneking|first6=Mark|last7=Horai|first7=Satoshi|journal=Journal of Human Genetics|volume=51|pages=47–58|pmid=16328082|issue=1}}</ref>
<ref name="Jin2009">Han-Jun Jin, Chris Tyler-Smith, and Wook Kim (2009), "The Peopling of Korea Revealed by Analyses of Mitochondrial DNA and Y-Chromosomal Markers," ''PLoS ONE'' 4(1): e4210. {{doi|10.1371/journal.pone.0004210}}</ref>
<ref name="Jin2009">{{cite journal|doi=10.1371/journal.pone.0004210|title=The Peopling of Korea Revealed by Analyses of Mitochondrial DNA and Y-Chromosomal Markers|year=2009|editor1-last=Batzer|editor1-first=Mark A|last1=Jin|first1=Han-Jun|last2=Tyler-Smith|first2=Chris|last3=Kim|first3=Wook|journal=PLoS ONE|volume=4|pages=e4210|pmid=19148289|issue=1|pmc=2615218}}</ref>
<ref name="Jin2010">Han-Jun Jin, Ki-Cheol Kim, and Wook Kim, "Genetic Diversity of Two Haploid Markers in the Udegey Population From Southeastern Siberia," ''American Journal of Physical Anthropology'' (2010) {{doi|10.1002/ajpa.21232}}</ref>
<ref name="Jin2010">{{cite journal|doi=10.1002/ajpa.21232}}</ref>
<ref name="Karafet2001">{{cite journal | last1=Karafet | first1=Tatiana | last2=Xu | first2=Liping | last3=Du | first3=Ruofu ''et al.'' | year=2001 | title=Paternal Population History of East Asia: Sources, Patterns, and Microevolutionary Processes | url=| journal=American Journal of Human Genetics | volume=69 | issue=| pages=615–628}}</ref>
<ref name="Karafet2001">{{cite journal|last1=Karafet|doi=10.1086/323299|title=Paternal Population History of East Asia: Sources, Patterns, and Microevolutionary Processes|year=2001|first1=Tatiana|last2=Xu|first2=Liping|last3=Du|first3=Ruofu|last4=Wang|first4=William|last5=Feng|first5=Shi|last6=Wells|first6=R.S.|last7=Redd|first7=Alan J.|last8=Zegura|first8=Stephen L.|last9=Hammer|first9=Michael F.|journal=The American Journal of Human Genetics|volume=69|issue=3|pages=615}}</ref>
<ref name="Katoh2004">Toru Katoh, Batmunkh Munkhbat, Kenichi Tounai ''et al.'', "Genetic features of Mongolian ethnic groups revealed by Y-chromosomal analysis," ''Gene'' (2004). {{doi|10.1016/j.gene.2004.10.023}} PMID 15716011</ref>
<ref name="Katoh2004">{{cite journal|doi=10.1016/j.gene.2004.10.023|title=Genetic features of Mongolian ethnic groups revealed by Y-chromosomal analysis|year=2005|last1=Katoh|first1=Toru|last2=Munkhbat|first2=Batmunkh|last3=Tounai|first3=Kenichi|last4=Mano|first4=Shuhei|last5=Ando|first5=Harue|last6=Oyungerel|first6=Ganjuur|last7=Chae|first7=Gue-Tae|last8=Han|first8=Huun|last9=Jia|first9=Guan-Jun|journal=Gene|volume=346|pages=63–70|pmid=15716011}}</ref>
<ref name="Kim2007">Wook Kim, Tag-Keun Yoo, Sung-Joo Kim ''et al.'' (2007), "Lack of Association between Y-Chromosomal Haplogroups and Prostate Cancer in the Korean Population," ''PLoS ONE'' 2(1): e172. {{doi|10.1371/journal.pone.0000172}}</ref>
<ref name="Kim2007">{{cite journal|doi=10.1371/journal.pone.0000172}}</ref>
<ref name="Lu2008">{{cite journal|doi=10.1093/hmg/ddn427}}</ref>
<ref name="Lu2008">Chuncheng Lu, Jie Zhang, Yingchun Li ''et al.'', "The b2/b3 subdeletion shows higher risk of spermatogenic failure and higher frequency of complete AZFc deletion than the gr/gr subdeletion in a Chinese population," ''Human Molecular Genetics'' Advance Access originally published online on December 16, 2008.</ref>
<ref name="Nonaka2007">I. Nonaka, K. Minaguchi, and N. Takezaki (2007), "Y-chromosomal Binary Haplogroups in the Japanese Population and their Relationship to 16 Y-STR Polymorphisms," ''Annals of Human Genetics'' Volume 71 Issue 4, Pages 480 - 495</ref>
<ref name="Nonaka2007">{{cite journal|doi=10.1111/j.1469-1809.2006.00343.x|title=Y-chromosomal Binary Haplogroups in the Japanese Population and their Relationship to 16 Y-STR Polymorphisms|year=2007|last1=Nonaka|first1=I.|last2=Minaguchi|first2=K.|last3=Takezaki|first3=N.|journal=Annals of Human Genetics|volume=71|issue=4|pages=480}}</ref>
<ref name="Tajima2004">Tajima A, Hayami M, Tokunaga K ''et al.'' (2004). "Genetic origins of the Ainu inferred from combined DNA analyses of maternal and paternal lineages". ''J. Hum. Genet.'' 49 (4): 187–93. {{doi|10.1007/s10038-004-0131-x}}. PMID 14997363.</ref>
<ref name="Tajima2004">{{cite journal|doi=10.1007/s10038-004-0131-x}}</ref>
<ref name="Xue2006">Yali Xue, Tatiana Zerjal, Weidong Bao ''et al.'', "Male Demography in East Asia: A North–South Contrast in Human Population Expansion Times," ''Genetics'' 172: 2431–2439 (April 2006). {{doi|10.1534/genetics.105.054270}}</ref>
<ref name="Xue2006">{{cite journal|doi=10.1534/genetics.105.054270}}</ref>
}}
}}


Revision as of 00:54, 23 December 2012

Haplogroup O-M176
Possible time of origin6,300 [95% CI 600–37,000] years ago[1]
Possible place of originManchuria or a nearby part of northern East Asia
AncestorO-P31
Defining mutationsM176/SRY465, P49, 022454
Highest frequenciesJapanese, South Koreans, Ryukyuan, and Manchu:

Haplogroup O-M176 (aka O-SRY465) is a human Y-chromosome DNA haplogroup. It is a descendant of Haplogroup O-P31.

Origin

The phylogeography of Haplogroup O-M176 suggests an ancient origin in Manchuria or a nearby part of northern East Asia, followed by a long period of isolated evolution and population increase in the vicinity of the Korean Peninsula.[citation needed]

Distribution

Haplogroup O-M176 is found mainly in the northernmost parts of East Asia, from the Uriankhai and Zakhchin peoples of western Mongolia[1] to the Japanese of Japan, though it also has been detected sporadically in the Buryats[2] and Udegeys[8] of southern Siberia, very rarely among populations of Southeast Asia (including Indonesia,[5][2] the Philippines,[2] Thailand,[2] and Vietnam[5][2]), and Micronesians.[5] This haplogroup is found with its highest frequency and diversity values among modern populations of Japan and Korea and is absent from most populations in China, but it has been detected in some samples of Han Chinese from Beijing[2] and Jiangsu,[9] Daurs,[10] Hezhes,[10] Koreans in China,[10][1] Manchus,[10][1][7] and Sibes.[10]


Subclade Distribution

Paragroup O-M176*

Only branches of this haplogroup that are labeled as Haplogroup O-M176*, i.e., those that do not exhibit the 47z mutation, have been detected among the indigenous populations of Inner Mongolia and northern Manchuria, and even then they are found only at very low frequencies. However, Haplogroup O-M176* Y-chromosomes have been detected with high frequency in Korea, where they account for approximately 14%[2][3][10] to 33%[5] of the Korean male population.

O-47z

Haplogroup O-47z
Possible time of origin7,870 [95% CI 5,720–12,630] years ago[5]
Possible place of originKorean Peninsula or Japanese Archipelago[2][5]
AncestorO-M176
Defining mutations47z
Highest frequenciesJapanese 24%[Footnote 5] (19%[2]-25%[5][6]), Okinawans 17%[Footnote 6] (11%[5]-20%[6]), South Koreans 8%[Footnote 7] (4%[5][7]-12%[10]), Manchus 7%[Footnote 8] (0%[7][5][10]-19%[3])

A subclade of Haplogroup O-M176, Haplogroup O-47z, is found with high frequency among the Yamato people and Ryukyuan populations of Japan. Haplogroup O-47z has been detected in approximately 22% of all males who speak a Japonic language, while it has not been found at all among a total of twenty Ainu males whose Y-DNA has been sampled in two genetic studies.[5][11] Based on the STR haplotype diversity within Haplogroup O-47z, it has been estimated that this haplogroup began to experience a population expansion among the proto-Japanese of approximately 4,000 years ago, which makes it a good candidate for a marker of the intrusion of a Neolithic population of the prehistoric Korean Peninsula into the southwestern parts of the Japanese Archipelago. However, the parent haplogroup, O-M176*, is also found among Japanese, although at a relatively low frequency of approximately 4%[10] to 8%[6], and the descendant haplogroup O-47z is found only with low frequency among samples of modern Koreans, which suggests the possibility that Haplogroup O-M176* might have colonized the Japanese Archipelago much earlier, with the subgroup O-47z subsequently evolving within the proto-Japanese-Ryukyuan population of the western parts of the archipelago.

Phylogenetics

Phylogenetic History

Main article: Conversion table for Y chromosome haplogroups

Prior to 2002, there were in academic literature at least seven naming systems for the Y-Chromosome Phylogenetic tree. This lead to considerable confusion. In 2002, the major research groups came together and formed the Y-Chromosome Consortium (YCC). They published a joint paper that created a single new tree that all agreed to use. Latter, a group of citizen scientists with an interest in population genetics and genetic genealogy formed a working group to create an amateur tree aiming at being above all timely. The table below brings together all of these works at the point of the landmark 2002 YCC Tree. This allows a researcher reviewing older published literature to quickly move between nomenclatures.

YCC 2002/2008 (Shorthand) (α) (β) (γ) (δ) (ε) (ζ) (η) YCC 2002 (Longhand) YCC 2005 (Longhand) YCC 2008 (Longhand) YCC 2010r (Longhand) ISOGG 2006 ISOGG 2007 ISOGG 2008 ISOGG 2009 ISOGG 2010 ISOGG 2011 ISOGG 2012
O-M175 26 VII 1U 28 Eu16 H9 I O* O O O O O O O O O O
O-M119 26 VII 1U 32 Eu16 H9 H O1* O1a O1a O1a O1a O1a O1a O1a O1a O1a O1a
O-M101 26 VII 1U 32 Eu16 H9 H O1a O1a1 O1a1a O1a1a O1a1 O1a1 O1a1a O1a1a O1a1a O1a1a O1a1a
O-M50 26 VII 1U 32 Eu16 H10 H O1b O1a2 O1a2 O1a2 O1a2 O1a2 O1a2 O1a2 O1a2 O1a2 O1a2
O-P31 26 VII 1U 33 Eu16 H5 I O2* O2 O2 O2 O2 O2 O2 O2 O2 O2 O2
O-M95 26 VII 1U 34 Eu16 H11 G O2a* O2a O2a O2a O2a O2a O2a O2a O2a O2a1 O2a1
O-M88 26 VII 1U 34 Eu16 H12 G O2a1 O2a1 O2a1 O2a1 O2a1 O2a1 O2a1 O2a1 O2a1 O2a1a O2a1a
O-SRY465 20 VII 1U 35 Eu16 H5 I O2b* O2b O2b O2b O2b O2b O2b O2b O2b O2b O2b
O-47z 5 VII 1U 26 Eu16 H5 I O2b1 O2b1a O2b1 O2b1 O2b1a O2b1a O2b1 O2b1 O2b1 O2b1 O2b1
O-M122 26 VII 1U 29 Eu16 H6 L O3* O3 O3 O3 O3 O3 O3 O3 O3 O3 O3
O-M121 26 VII 1U 29 Eu16 H6 L O3a O3a O3a1 O3a1 O3a1 O3a1 O3a1 O3a1 O3a1 O3a1a O3a1a
O-M164 26 VII 1U 29 Eu16 H6 L O3b O3b O3a2 O3a2 O3a2 O3a2 O3a2 O3a2 O3a2 O3a1b O3a1b
O-M159 13 VII 1U 31 Eu16 H6 L O3c O3c O3a3a O3a3a O3a3 O3a3 O3a3a O3a3a O3a3a O3a3a O3a3a
O-M7 26 VII 1U 29 Eu16 H7 L O3d* O3c O3a3b O3a3b O3a4 O3a4 O3a3b O3a3b O3a3b O3a2b O3a2b
O-M113 26 VII 1U 29 Eu16 H7 L O3d1 O3c1 O3a3b1 O3a3b1 - O3a4a O3a3b1 O3a3b1 O3a3b1 O3a2b1 O3a2b1
O-M134 26 VII 1U 30 Eu16 H8 L O3e* O3d O3a3c O3a3c O3a5 O3a5 O3a3c O3a3c O3a3c O3a2c1 O3a2c1
O-M117 26 VII 1U 30 Eu16 H8 L O3e1* O3d1 O3a3c1 O3a3c1 O3a5a O3a5a O3a3c1 O3a3c1 O3a3c1 O3a2c1a O3a2c1a
O-M162 26 VII 1U 30 Eu16 H8 L O3e1a O3d1a O3a3c1a O3a3c1a O3a5a1 O3a5a1 O3a3c1a O3a3c1a O3a3c1a O3a2c1a1 O3a2c1a1

Original Research Publications

The following research teams per their publications were represented in the creation of the YCC Tree.

3

Phylogenetic Trees

This phylogenetic tree of haplogroup O subclades is based on the YCC 2008 tree (Karafet 2008) and subsequent published research.

  • O-M176 (M176/SRY465, P49, 022454)
    • O-47z (47z)

See also

Genetics

3

Y-DNA O Subclades

3

Y-DNA Backbone Tree

References

Footnotes

  1. ^ 238/744=32.0% O-M176 in a pool of all Japanese samples of Xue et al. (2006), Katoh et al. (2004), Han-Jun Jin et al. (2009), Nonaka et al. (2007), and all non-Ainu and non-Okinawan Japanese samples of Hammer et al. (2006).
  2. ^ 202/677=29.8% O-M176 in a pool of all ethnic Korean samples of Hammer et al. (2006), Xue et al. (2006), Katoh et al. (2004), Wook Kim et al. (2007), and Han-Jun Jin et al. (2009).
  3. ^ 30/132=22.7% O-M176 in a pool of all Okinawan data from Hammer et al. (2006) and Nonaka et al. (2007)
  4. ^ 45/232=19.4% O-M176 in a pool of all Manchu samples of Karafet et al. (2001), Han-Jun Jin et al. (2003), Katoh et al. (2004), and Xue et al. (2006)
  5. ^ 150/628=23.9% O-47z in a pool of all non-Ainu and non-Okinawan Japanese samples of Jin et al. (2003), Hammer et al. (2006), Xue et al. (2006), and Nonaka et al. (2007)
  6. ^ 22/132=16.7% O-47z in a pool of all Okinawan samples of Hammer et al. (2006) and Nonaka et al. (2007)
  7. ^ 41/519=7.9% O-47z in a pool of all ethnic Korean samples of Jin et al. (2003), Hammer et al. (2006), Xue et al. (2006), and Kim et al. (2007)
  8. ^ 9/135=6.7% O-47z in a pool of all "Manchu" or "Manchurian" samples of Hammer et al. (2006), Xue et al. (2006), and Jin et al. (2009)

Works Cited

  1. ^ a b c d e f g Katoh, Toru; Munkhbat, Batmunkh; Tounai, Kenichi; Mano, Shuhei; Ando, Harue; Oyungerel, Ganjuur; Chae, Gue-Tae; Han, Huun; Jia, Guan-Jun (2005). "Genetic features of Mongolian ethnic groups revealed by Y-chromosomal analysis". Gene. 346: 63–70. doi:10.1016/j.gene.2004.10.023. PMID 15716011.
  2. ^ a b c d e f g h i j k . doi:10.1007/s00439-003-1019-0. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  3. ^ a b c Jin, Han-Jun; Tyler-Smith, Chris; Kim, Wook (2009). Batzer, Mark A (ed.). "The Peopling of Korea Revealed by Analyses of Mitochondrial DNA and Y-Chromosomal Markers". PLoS ONE. 4 (1): e4210. doi:10.1371/journal.pone.0004210. PMC 2615218. PMID 19148289.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  4. ^ . doi:10.1371/journal.pone.0000172. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)CS1 maint: unflagged free DOI (link)
  5. ^ a b c d e f g h i j k l Hammer, Michael F.; Karafet, Tatiana M.; Park, Hwayong; Omoto, Keiichi; Harihara, Shinji; Stoneking, Mark; Horai, Satoshi (2005). "Dual origins of the Japanese: Common ground for hunter-gatherer and farmer Y chromosomes". Journal of Human Genetics. 51 (1): 47–58. doi:10.1007/s10038-005-0322-0. PMID 16328082.
  6. ^ a b c d Nonaka, I.; Minaguchi, K.; Takezaki, N. (2007). "Y-chromosomal Binary Haplogroups in the Japanese Population and their Relationship to 16 Y-STR Polymorphisms". Annals of Human Genetics. 71 (4): 480. doi:10.1111/j.1469-1809.2006.00343.x.
  7. ^ a b c d Karafet, Tatiana; Xu, Liping; Du, Ruofu; Wang, William; Feng, Shi; Wells, R.S.; Redd, Alan J.; Zegura, Stephen L.; Hammer, Michael F. (2001). "Paternal Population History of East Asia: Sources, Patterns, and Microevolutionary Processes". The American Journal of Human Genetics. 69 (3): 615. doi:10.1086/323299.
  8. ^ . doi:10.1002/ajpa.21232. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  9. ^ . doi:10.1093/hmg/ddn427. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  10. ^ a b c d e f g h i . doi:10.1534/genetics.105.054270. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  11. ^ . doi:10.1007/s10038-004-0131-x. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)

Further Reading

Stub icon

This genetics article is a stub. You can help Wikipedia by expanding it.

Retrieved from "https://en.wikipedia.org/w/index.php?title=Draft:Haplogroup_O-M176&oldid=529368614"