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The holobiont concept is a renewed paradigm in biology that can help to describe and understand complex systems, like the host-microbe interactions that play crucial roles in marine ecosystems. However, there is still little understanding of the mechanisms that govern these relationships, the evolutionary processes that shape them and their ecological consequences. The holobiont concept posits that a host and its associated microbiota with which it interacts, form a holobiont, and have to be studied together as a coherent biological and functional unit to understand its biology, ecology, and evolution.[1]

History

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Partners forming marine holobionts [1]

The idea of holism started to regain popularity in biology when the endosymbiosis theory was first proposed by Konstantin Mereschkowski in 1905 and further developed by Ivan Wallin in 1925. Still accepted today, this theory posits a single origin for eukaryotic cells through the symbiotic assimilation of prokaryotes to form first mitochondria and later plastids (the latter through several independent symbiotic events) via phagocytosis (reviewed in Archibald, 2015).[2] These ancestral and founding symbiotic events, which prompted the metabolic and cellular complexity of eukaryotic life, most likely occurred in the ocean.[3][1]

Despite the general acceptance of the endosymbiosis theory, the term holobiosis or holobiont did not immediately enter the scientific vernacular. It was coined independently by the German Adolf Meyer-Abich in 1943,[4][5] and by Lynn Margulis in 1990, who proposed that evolution has worked mainly through symbiosis-driven leaps that merged organisms into new forms, referred to as “holobionts”, and only secondarily through gradual mutational changes.[6][7] However, the concept was not widely used until it was co-opted by coral biologists over a decade later. Corals and the dinoflagellate algae called Zooxanthellae are one of the most iconic examples of symbioses found in nature; most corals are incapable of long-term survival without the products of photosynthesis provided by their endosymbiotic algae. Rohwer et al. (2002)[8] were the first to use the word holobiont to describe a unit of selection sensu Margulis [9] for corals, where the holobiont comprised the cnidarian polyp (host), Zooxanthellae algae, various ectosymbionts (endolithic algae, prokaryotes, fungi, other unicellular eukaryotes), and viruses.[1]

Although initially driven by studies of marine organisms, much of the research on the emerging properties and significance of holobionts has since been carried out in other fields of research: the microbiota of the rhizosphere of plants or the animal gut became predominant models and have led to an ongoing paradigm shift in agronomy and medical sciences.[10][11][12] Holobionts occur in terrestrial and aquatic habitats alike, and several analogies between these ecosystems can be made. For example, in all of these habitats, interactions within and across holobionts such as induction of chemical defenses, nutrient acquisition, or biofilm formation are mediated by chemical cues and signals in the environment, dubbed infochemicals.[13][14][15][16] Nevertheless, we can identify two major differences between terrestrial and aquatic systems. First, the physicochemical properties of water result in higher chemical connectivity and signaling between macro- and micro-organisms in aquatic or moist environments. In marine ecosystems, carbon fluxes also appear to be swifter and trophic modes more flexible, leading to higher plasticity of functional interactions across holobionts.[17] Moreover, dispersal barriers are usually lower, allowing for faster microbial community shifts in marine holobionts.[18][19] Secondly, phylogenetic diversity at broad taxonomic scales (i.e., supra-kingdom, kingdom and phylum levels), is higher in aquatic realms compared to land, with much of the aquatic diversity yet to be uncovered,[20][21] especially marine viruses.[22][23][24][1]

Russian Doll complexity

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Schematic view of the “Russian Doll” complexity and dynamics of holobionts, according to diverse spatiotemporal scales [1]
(see text on left for explanation)

The boundaries of holobionts are usually delimited by a physical gradient, which corresponds to the area of local influence of the host, e.g., in unicellular algae the so-called phycosphere.[25] However, they may also be defined in a context-dependent way as a Russian matryoshka doll, setting the boundaries of the holobiont depending on the interactions and biological functions that are being considered. Thus holobionts may encompass all levels of host-symbiont associations from intimate endosymbiosis with a high degree of co-evolution up to the community and ecosystem level; a concept referred to as "nested ecosystems" (see diagram).[26][27][1]

In the diagram on the right, the host (blue circles), and associated microbes (all other shapes) including bacteria and eukaryotes that may be inside (i.e., endosymbiotic) or outside the host (i.e., ectosymbiotic) are connected by either beneficial (solid orange lines), neutral (solid blue lines) or pathogenic (dashed black lines) interactions, respectively. Changes from beneficial or neutral to pathogenic interactions are typical cases of dysbiosis. The different clusters are illustrated by the following examples: 1, a model holobiont in a stable physiological condition (e.g., in controlled laboratory condition); 2 and 3, holobionts changing during their life cycle or subjected to stress conditions—examples of vertically transmitted microbes are indicated by light blue arrows; 4 and 5, marine holobionts in the context of global sampling campaigns or long-term time series—examples of horizontal transmission of microbes and holobionts are illustrated by pink arrows.[1]

Such a conceptual perspective raises fundamental questions not only regarding the interaction between the different components of holobionts and processes governing their dynamics, but also of the relevant units of selection and the role of coevolution. For instance, plant and animal evolution involves new functions co-constructed by members of the holobiont or elimination of functions redundant among them,[28] and it is likely that these processes are also relevant in marine holobionts. Eugene Rosenberg et al. have argued that all animals and plants can be considered holobionts, and thus advocate the hologenome theory of evolution, suggesting that natural selection acts at the level of the holobiont and its hologenome.[29][30] This interpretation of Margulis' definition of a holobiont considerably broadened fundamental concepts in evolution and speciation and has not been free of criticism,[31] especially when applied at the community or ecosystem level.[32] More recently, it has been shown that species that interact indirectly with the host can also be important in shaping coevolution within mutualistic multi-partner assemblages.[33] Thus, the holobiont concept and the underlying complexity of holobiont systems should be better defined and further considered when addressing evolutionary and ecological questions.[1]

Marine holobiont models

[edit]
  • Environmental models: Within the animal kingdom, and in addition to corals and sponges, the discovery of deep-sea hydrothermal vents revealed symbioses of animals with chemosynthetic bacteria that have later been found in many other marine ecosystems [34][35] and frequently exhibit high levels of metabolic and taxonomic diversity.[36][37][38] In the SAR supergroup, in addition to well-known models such as diatoms, radiolarians and foraminiferans, both heterotrophic protist dwellers harboring endosymbiotic microalgae, are emerging as ecological models for unicellular photosymbiosis due to their ubiquitous presence in the world's oceans.[39][40] Among the haptophytes, the cosmopolitan Emiliania huxleyi, promoted by associated bacteria,[41][42] produces key intermediates in the carbon and sulfur biogeochemical cycles, making it an important model phytoplankton species. Finally, within the Archaeplastida, the siphonous green alga Bryopsis is an example of a model that harbors heterotrophic endosymbiotic bacteria, some of which exhibit patterns of co-evolution with their hosts.[43][1]
  • Controlled bi- or trilateral associations: Only a few models, covering a small part of the overall marine biodiversity, are currently being cultivated ex-situ and can be used in fully controlled experiments, where they can be cultured aposymbiotically. The flatworm Symsagittifera roscoffensis,[44] the sea anemone Exaiptasia,[45][46] the upside-down jellyfish Cassiopea,[47] and their respective intracellular green and dinoflagellate algae have, in addition to corals, become models for fundamental research on evolution of animal-algal photosymbiosis. In particular, the sea anemone Exaiptasia has been used to explore photobiology disruption and restoration of cnidarian symbioses.[48] The Vibrio-squid model provides insights into the effect of microbiota on animal development, circadian rhythms, and immune systems/[49] The unicellular green alga Ostreococcus, an important marine primary producer, has been shown to exchange vitamins with specific associated bacteria.[50] The green macroalga Ulva mutabilis has enabled the exploration of bacteria-mediated growth and morphogenesis including the identification of original chemical interactions in the holobiont.[51][52] Although the culture conditions in these highly controlled model systems differ from the natural environment, these systems are essential to gain elementary mechanistic understanding of the functioning, the roles, and the evolution of marine holobionts.[1]

Example holobionts

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Influence on ecological processes

[edit]
Climate change and the rhodolith holobiont[56]

Work on model systems has demonstrated that motile and macroscopic marine holobionts can act as dissemination vectors for geographically restricted microbial taxa. Pelagic mollusks or vertebrates are textbook examples of high dispersal capacity organisms (e.g., against currents and through stratified water layers). It has been estimated that fish and marine mammals may enhance the original dispersion rate of their microbiota by a factor of 200 to 200,000 [57] and marine birds may even act as bio-vectors across ecosystem boundaries.[58] This host-driven dispersal of microbes can include non-native or invasive species as well as pathogens.[57][1]

A related ecological function of holobionts is their potential to sustain rare species. Hosts provide an environment that favors the growth of specific microbial communities distinct from the surrounding environment (including rare microbes). They may, for instance, provide a nutrient-rich niche in the otherwise nutrient-poor surroundings.[59][60][61][62][63][1]

Lastly, biological processes regulated by microbes are important drivers of global biogeochemical cycles.[64][65][66] In the open ocean, it is estimated that symbioses with the cyanobacterium UCYN-A contribute about 20% to total N2 fixation.[67][68] In benthic systems, sponges and corals may support entire ecosystems via their involvement in nutrient cycling thanks to their microbial partners,[69][70][71][27] functioning as sinks and sources of nutrients. In particular the “sponge loop” recycles dissolved organic matter and makes it available to higher trophic levels in the form of detritus.[72][70][73] In coastal sediments, bivalves hosting methanogenic archaea have been shown to increase the benthic methane efflux by a factor of up to eight, potentially accounting for 9.5% of total methane emissions from the Baltic Sea.[74] This metabolic versatility is accomplished because of the simultaneous occurrence of disparate biochemical machineries (e.g., aerobic and anaerobic pathways) in individual symbionts, providing new metabolic abilities to the holobiont, such as the synthesis of specific essential amino acids, photosynthesis, or chemosynthesis.[34][75] Furthermore, the interaction between host and microbiota can potentially extend the metabolic capabilities of a holobiont in a way that augments its resilience to environmental changes,[76][77][78][79][80] or allow it to cross biotope boundaries (e.g., Woyke et al., 2006) and colonize extreme environments (Bang et al., 2018). Holobionts thus contribute to marine microbial diversity and possibly resilience in the context of global environmental changes [57] and it is paramount to include the holobiont concept in predictive models that investigate the consequences of human impacts on the marine realm and its biogeochemical cycles.[1]

Holobiont assembly and regulation

[edit]
Mind map of concepts related to marine holobionts [1]

Two critical challenges partially addressed by using model systems are (1) to decipher the factors determining holobiont composition and (2) to elucidate the impacts and roles of the different partners in these complex systems over time. Some marine organisms such as bivalves transmit part of the microbiota maternally.[81][82] In other marine holobionts, vertical transmission may be weak and inconsistent, whereas mixed modes of transmission (vertical and horizontal) or intermediate modes (pseudo-vertical, where horizontal acquisition frequently involves symbionts of parental origin) are more common.[83] Identifying the factors shaping holobiont composition and understanding their evolution is highly relevant for marine organisms given that most marine hosts display a high specificity for their microbiota and even patterns of phylosymbiosis,[84][85][86] despite a highly connected and microbe-rich environment.[1]

During microbiota transmission (whether vertical or horizontal), selection by the host and/or by other components of the microbiome, is a key process in establishing or maintaining a holobiont microbial community that is distinct from the environment. The immune system of the host, e.g., via the secretion of specific antimicrobial peptides,[87][88] is one way of performing this selection in both marine and terrestrial holobionts.[1]

Another way of selecting a holobiont microbial community is by chemically mediated microbial gardening. This concept has been demonstrated for land plants, where root exudates manipulate microbiome composition.[89] In marine environments, the phylogenetic diversity of hosts and symbionts suggests both conserved and marine-specific chemical interactions, but studies are still in their infancy. For instance, seaweeds can chemically garden beneficial microbes, facilitating normal morphogenesis and increasing disease resistance,[52][90] and seaweeds and corals structure their surface-associated microbiome by producing chemoattractants and antibacterial compounds.[14][91] There are fewer examples of chemical gardening in unicellular hosts, but it seems highly likely that similar processes are in place.[92][93][1]

In addition to selection, ecological drift, dispersal and evolutionary diversification have been proposed as key processes in community assembly, but are difficult to estimate in microbial communities.[94] The only data currently at our disposal to quantify these processes are the diversity and distribution of microbes. Considering the high connectivity of aquatic environments, differences in marine microbial communities are frequently attributed to a combination of selection and drift, rather than limited dispersal,[61] a conclusion which in the future could be refined by conceptual models developed for instance for soil microbial communities.[93][95]) Diversification is mainly considered in the sense of coevolution or adaptation to host selection, which may also be driven by the horizontal acquisition of genes. However, cospeciation is challenging to prove [96][32] and only few studies have examined this process in marine holobionts to date, each focused on a restricted number of actors.[97][98][1]

Perturbations in the transmission or the recruitment of the microbiota can lead to dysbiosis, and eventually microbial infections.[28][93] Dysbiotic microbial communities are frequently determined by stochastic processes and thus display higher variability in their composition than those of healthy individuals. This observation in line with the "Anna Karenina principle",[99] although there are exceptions to this rule.[93] A specific case of dysbiosis is the so-called "Rasputin effect" where benign endosymbionts opportunistically become detrimental to the host due to processes such as reduction in immune response under food deprivation, coinfections, or environmental pressure.[100] Many diseases are now interpreted as the result of a microbial imbalance and the rise of opportunistic or polymicrobial infections upon host stress.[101] For instance in reef-building corals, warming destabilizes cnidarian-dinoflagellate associations, and some beneficial Symbiodiniacea strains switch their physiology and sequester more resources for their own growth at the expense of the coral host, leading to coral bleaching and even death.[102][1]

Increasing our knowledge on the contribution of these processes to holobiont community assembly in marine systems is a key challenge, which is of particular urgency today in the context of ongoing global change. Moreover, understanding how the community and functional structure of resident microbes are resilient to perturbations remains critical to predict and promote the health of their host and the ecosystem. Yet, the contribution of the microbiome is still missing in most quantitative models predicting the distribution of marine macro-organisms, or additional information on biological interactions would be required to make the former more accurate.[103][1]

References

[edit]
  1. ^ a b c d e f g h i j k l m n o p q r s t u Dittami, Simon M.; et al. (2021). "A community perspective on the concept of marine holobionts: Current status, challenges, and future directions". PeerJ. 9: e10911. doi:10.7717/peerj.10911. PMC 7916533. PMID 33665032. Material was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
  2. ^ Archibald, John M. (2015). "Endosymbiosis and Eukaryotic Cell Evolution". Current Biology. 25 (19): R911 – R921. doi:10.1016/j.cub.2015.07.055. PMID 26439354. S2CID 16089231.
  3. ^ Martin, William; Baross, John; Kelley, Deborah; Russell, Michael J. (2008). "Hydrothermal vents and the origin of life". Nature Reviews Microbiology. 6 (11): 805–814. doi:10.1038/nrmicro1991. PMID 18820700. S2CID 1709272.
  4. ^ Meyer-Abich A. (1943). "Beiträge zur Theorie der Evolution der Organismen. I. Das typologische Grundgesetz und seine Folgerungen für Phylogenie und Entwicklungsphysiologie" [Contributions to the evolutionary theory of organisms: I. The basic typological law and its implications] Acta Biotheoretica, 7: 1–80
  5. ^ Baedke, Jan; Fábregas‐Tejeda, Alejandro; Nieves Delgado, Abigail (2020). "The holobiont concept before Margulis". Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. 334 (3): 149–155. doi:10.1002/jez.b.22931. PMID 32039567. Material was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
  6. ^ Margulis, Lynn; Fester, René (1991). Symbiosis as a Source of Evolutionary Innovation: Speciation and Morphogenesis. MIT Press. ISBN 9780262132695.
  7. ^ o'Malley, Maureen A. (2017). "From endosymbiosis to holobionts: Evaluating a conceptual legacy". Journal of Theoretical Biology. 434: 34–41. Bibcode:2017JThBi.434...34O. doi:10.1016/j.jtbi.2017.03.008. PMID 28302492.
  8. ^ Rohwer, F.; Seguritan, V.; Azam, F.; Knowlton, N. (2002). "Diversity and distribution of coral-associated bacteria". Marine Ecology Progress Series. 243: 1–10. Bibcode:2002MEPS..243....1R. doi:10.3354/meps243001.
  9. ^ Rosenberg, Eugene; Koren, Omry; Reshef, Leah; Efrony, Rotem; Zilber-Rosenberg, Ilana (2007). "The hologenome theory disregards the coral holobiont: Reply from Rosenberg et al". Nature Reviews Microbiology. 5 (10): 826. doi:10.1038/nrmicro1635-c2. S2CID 8258214.
  10. ^ Bulgarelli, Davide; Schlaeppi, Klaus; Spaepen, Stijn; Van Themaat, Emiel Ver Loren; Schulze-Lefert, Paul (2013). "Structure and Functions of the Bacterial Microbiota of Plants". Annual Review of Plant Biology. 64: 807–838. doi:10.1146/annurev-arplant-050312-120106. PMID 23373698.
  11. ^ Shreiner, Andrew B.; Kao, John Y.; Young, Vincent B. (2015). "The gut microbiome in health and in disease". Current Opinion in Gastroenterology. 31 (1): 69–75. doi:10.1097/MOG.0000000000000139. PMC 4290017. PMID 25394236.
  12. ^ Faure, Denis; Simon, Jean-Christophe; Heulin, Thierry (2018). "Holobiont: A conceptual framework to explore the eco-evolutionary and functional implications of host-microbiota interactions in all ecosystems". New Phytologist. 218 (4): 1321–1324. doi:10.1111/nph.15199. PMID 29738088.
  13. ^ Loh, John; Pierson, Elizabeth A.; Pierson, Leland S.; Stacey, Gary; Chatterjee, Arun (2002). "Quorum sensing in plant-associated bacteria". Current Opinion in Plant Biology. 5 (4): 285–290. doi:10.1016/S1369-5266(02)00274-1. PMID 12179960.
  14. ^ a b Harder, Tilmann; Campbell, Alexandra H.; Egan, Suhelen; Steinberg, Peter D. (2012). "Chemical Mediation of Ternary Interactions Between Marine Holobionts and Their Environment as Exemplified by the Red Alga Delisea pulchra". Journal of Chemical Ecology. 38 (5): 442–450. doi:10.1007/s10886-012-0119-5. PMID 22527059. S2CID 14117311.
  15. ^ Rolland, Jean luc; Stien, Didier; Sanchez-Ferandin, Sophie; Lami, Raphaël (2016). "Quorum Sensing and Quorum Quenching in the Phycosphere of Phytoplankton: A Case of Chemical Interactions in Ecology" (PDF). Journal of Chemical Ecology. 42 (12): 1201–1211. doi:10.1007/s10886-016-0791-y. PMID 27822708. S2CID 16684025.
  16. ^ Saha, Mahasweta; Berdalet, Elisa; Carotenuto, Ylenia; Fink, Patrick; Harder, Tilmann; John, Uwe; Not, Fabrice; Pohnert, Georg; Potin, Philippe; Selander, Erik; Vyverman, Wim; Wichard, Thomas; Zupo, Valerio; Steinke, Michael (2019). "Using chemical language to shape future marine health". Frontiers in Ecology and the Environment. 17 (9): 530–537. doi:10.1002/fee.2113. hdl:1854/LU-8640919. S2CID 191151384.
  17. ^ Mitra, A.; Flynn, K. J.; Burkholder, J. M.; Berge, T.; Calbet, A.; Raven, J. A.; Granéli, E.; Glibert, P. M.; Hansen, P. J.; Stoecker, D. K.; Thingstad, F.; Tillmann, U.; Våge, S.; Wilken, S.; Zubkov, M. V. (2014). "The role of mixotrophic protists in the biological carbon pump". Biogeosciences. 11 (4): 995–1005. Bibcode:2014BGeo...11..995M. doi:10.5194/bg-11-995-2014. hdl:10453/117781. Material was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
  18. ^ Kinlan, Brian P.; Gaines, Steven D. (2003). "Propagule Dispersal in Marine and Terrestrial Environments: A Community Perspective". Ecology. 84 (8): 2007–2020. doi:10.1890/01-0622.
  19. ^ Burgess, Scott C.; Baskett, Marissa L.; Grosberg, Richard K.; Morgan, Steven G.; Strathmann, Richard R. (2016). "When is dispersal for dispersal? Unifying marine and terrestrial perspectives". Biological Reviews. 91 (3): 867–882. doi:10.1111/brv.12198. PMID 26118564. S2CID 9877585.
  20. ^ De Vargas, C.; et al. (2015). "Eukaryotic plankton diversity in the sunlit ocean". Science. 348 (6237). doi:10.1126/science.1261605. hdl:10261/117736. PMID 25999516. S2CID 12853481.
  21. ^ Thompson, Luke R.; et al. (2017). "A communal catalogue reveals Earth's multiscale microbial diversity". Nature. 551 (7681): 457–463. Bibcode:2017Natur.551..457T. doi:10.1038/nature24621. PMC 6192678. PMID 29088705. Material was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
  22. ^ Middelboe, Mathias; Brussaard, Corina (2017). "Marine Viruses: Key Players in Marine Ecosystems". Viruses. 9 (10): 302. doi:10.3390/v9100302. PMC 5691653. PMID 29057790. Material was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
  23. ^ Gregory, Ann C.; et al. (2019). "Marine DNA Viral Macro- and Microdiversity from Pole to Pole". Cell. 177 (5): 1109–1123.e14. doi:10.1016/j.cell.2019.03.040. PMC 6525058. PMID 31031001.
  24. ^ Dominguez-Huerta, Guillermo; Zayed, Ahmed A.; Wainaina, James M.; Guo, Jiarong; Tian, Funing; Pratama, Akbar Adjie; Bolduc, Benjamin; Mohssen, Mohamed; Zablocki, Olivier; Pelletier, Eric; Delage, Erwan (10 June 2022). "Diversity and ecological footprint of Global Ocean RNA viruses". Science. 376 (6598): 1202–1208. doi:10.1126/science.abn6358. ISSN 0036-8075. PMID 35679415.
  25. ^ Seymour, Justin R.; Amin, Shady A.; Raina, Jean-Baptiste; Stocker, Roman (2017). "Zooming in on the phycosphere: The ecological interface for phytoplankton–bacteria relationships". Nature Microbiology. 2 (7): 17065. doi:10.1038/nmicrobiol.2017.65. hdl:10453/102139. PMID 28555622. S2CID 25219954.
  26. ^ McFall-Ngai, Margaret; Hadfield, Michael G.; Bosch, Thomas C. G.; Carey, Hannah V.; Domazet-Lošo, Tomislav; Douglas, Angela E.; Dubilier, Nicole; Eberl, Gerard; Fukami, Tadashi; Gilbert, Scott F.; Hentschel, Ute; King, Nicole; Kjelleberg, Staffan; Knoll, Andrew H.; Kremer, Natacha; Mazmanian, Sarkis K.; Metcalf, Jessica L.; Nealson, Kenneth; Pierce, Naomi E.; Rawls, John F.; Reid, Ann; Ruby, Edward G.; Rumpho, Mary; Sanders, Jon G.; Tautz, Diethard; Wernegreen, Jennifer J. (2013). "Animals in a bacterial world, a new imperative for the life sciences". Proceedings of the National Academy of Sciences. 110 (9): 3229–3236. Bibcode:2013PNAS..110.3229M. doi:10.1073/pnas.1218525110. PMC 3587249. PMID 23391737.
  27. ^ a b c Pita, L.; Rix, L.; Slaby, B. M.; Franke, A.; Hentschel, U. (2018). "The sponge holobiont in a changing ocean: From microbes to ecosystems". Microbiome. 6 (1): 46. doi:10.1186/s40168-018-0428-1. PMC 5845141. PMID 29523192. S2CID 3856584. Material was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
  28. ^ a b Selosse, Marc-André; Bessis, Alain; Pozo, María J. (2014). "Microbial priming of plant and animal immunity: Symbionts as developmental signals". Trends in Microbiology. 22 (11): 607–613. doi:10.1016/j.tim.2014.07.003. PMID 25124464.
  29. ^ Rosenberg, Eugene; Sharon, Gil; Atad, Ilil; Zilber-Rosenberg, Ilana (2010). "The evolution of animals and plants via symbiosis with microorganisms". Environmental Microbiology Reports. 2 (4): 500–506. doi:10.1111/j.1758-2229.2010.00177.x. PMID 23766221.
  30. ^ Rosenberg, Eugene; Zilber-Rosenberg, Ilana (2018). "The hologenome concept of evolution after 10 years". Microbiome. 6 (1): 78. doi:10.1186/s40168-018-0457-9. PMC 5922317. PMID 29695294. Material was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
  31. ^ Douglas, Angela E.; Werren, John H. (2016). "Holes in the Hologenome: Why Host-Microbe Symbioses Are Not Holobionts". mBio. 7 (2): e02099. doi:10.1128/mBio.02099-15. PMC 4817262. PMID 27034285.
  32. ^ a b Moran, Nancy A.; Sloan, Daniel B. (2015). "The Hologenome Concept: Helpful or Hollow?". PLOS Biology. 13 (12): e1002311. doi:10.1371/journal.pbio.1002311. PMC 4670207. PMID 26636661. Material was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
  33. ^ Guimarães, Paulo R.; Pires, Mathias M.; Jordano, Pedro; Bascompte, Jordi; Thompson, John N. (2017). "Indirect effects drive coevolution in mutualistic networks". Nature. 550 (7677): 511–514. Bibcode:2017Natur.550..511G. doi:10.1038/nature24273. PMID 29045396. S2CID 205261069.
  34. ^ a b Dubilier, Nicole; Bergin, Claudia; Lott, Christian (2008). "Symbiotic diversity in marine animals: The art of harnessing chemosynthesis". Nature Reviews Microbiology. 6 (10): 725–740. doi:10.1038/nrmicro1992. PMID 18794911. S2CID 3622420.
  35. ^ Rubin-Blum, Maxim; Antony, Chakkiath Paul; Sayavedra, Lizbeth; Martínez-Pérez, Clara; Birgel, Daniel; Peckmann, Jörn; Wu, Yu-Chen; Cardenas, Paco; MacDonald, Ian; Marcon, Yann; Sahling, Heiko; Hentschel, Ute; Dubilier, Nicole (2019). "Fueled by methane: Deep-sea sponges from asphalt seeps gain their nutrition from methane-oxidizing symbionts". The ISME Journal. 13 (5): 1209–1225. doi:10.1038/s41396-019-0346-7. PMC 6474228. PMID 30647460. Material was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
  36. ^ Duperron, Sébastien; Halary, Sébastien; Lorion, Julien; Sibuet, Myriam; Gaill, Françoise (2008). "Unexpected co-occurrence of six bacterial symbionts in the gills of the cold seep mussel Idas sp. (Bivalvia: Mytilidae)". Environmental Microbiology. 10 (2): 433–445. doi:10.1111/j.1462-2920.2007.01465.x. PMID 18093159.
  37. ^ Petersen, Jillian M.; Kemper, Anna; Gruber-Vodicka, Harald; Cardini, Ulisse; Van Der Geest, Matthijs; Kleiner, Manuel; Bulgheresi, Silvia; Mußmann, Marc; Herbold, Craig; Seah, Brandon K.B.; Antony, Chakkiath Paul; Liu, Dan; Belitz, Alexandra; Weber, Miriam (2017). "Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation". Nature Microbiology. 2 (1): 16195. doi:10.1038/nmicrobiol.2016.195. PMC 6872982. PMID 27775707.
  38. ^ Ponnudurai, Ruby; Kleiner, Manuel; Sayavedra, Lizbeth; Petersen, Jillian M.; Moche, Martin; Otto, Andreas; Becher, Dörte; Takeuchi, Takeshi; Satoh, Noriyuki; Dubilier, Nicole; Schweder, Thomas; Markert, Stephanie (2017). "Metabolic and physiological interdependencies in the Bathymodiolus azoricus symbiosis". The ISME Journal. 11 (2): 463–477. doi:10.1038/ismej.2016.124. PMC 5270565. PMID 27801908.
  39. ^ Decelle, Johan; Colin, Sébastien; Foster, Rachel A. (2015). "Photosymbiosis in Marine Planktonic Protists". Marine Protists. pp. 465–500. doi:10.1007/978-4-431-55130-0_19. ISBN 978-4-431-55129-4.
  40. ^ Not, Fabrice; Probert, Ian; Gerikas Ribeiro, Catherine; Crenn, Klervi; Guillou, Laure; Jeanthon, Christian; Vaulot, Daniel (2016). "Photosymbiosis in Marine Pelagic Environments". The Marine Microbiome. pp. 305–332. doi:10.1007/978-3-319-33000-6_11. ISBN 978-3-319-32998-7.
  41. ^ Seyedsayamdost, Mohammad R.; Case, Rebecca J.; Kolter, Roberto; Clardy, Jon (2011). "The Jekyll-and-Hyde chemistry of Phaeobacter gallaeciensis". Nature Chemistry. 3 (4): 331–335. Bibcode:2011NatCh...3..331S. doi:10.1038/nchem.1002. PMC 3376411. PMID 21430694.
  42. ^ Segev, Einat; Wyche, Thomas P.; Kim, Ki Hyun; Petersen, Jörn; Ellebrandt, Claire; Vlamakis, Hera; Barteneva, Natasha; Paulson, Joseph N.; Chai, Liraz; Clardy, Jon; Kolter, Roberto (2016). "Dynamic metabolic exchange governs a marine algal-bacterial interaction". eLife. 5. doi:10.7554/eLife.17473. PMC 5148602. PMID 27855786.
  43. ^ Hollants, Joke; Leliaert, Frederik; Verbruggen, Heroen; De Clerck, Olivier; Willems, Anne (2013). "Host specificity and coevolution of Flavobacteriaceae endosymbionts within the siphonous green seaweed Bryopsis". Molecular Phylogenetics and Evolution. 67 (3): 608–614. doi:10.1016/j.ympev.2013.02.025. hdl:1854/LU-3236190. PMID 23499613.
  44. ^ Arboleda, Enrique; Hartenstein, Volker; Martinez, Pedro; Reichert, Heinrich; Sen, Sonia; Sprecher, Simon; Bailly, Xavier (2018). "An Emerging System to Study Photosymbiosis, Brain Regeneration, Chronobiology, and Behavior: The Marine Acoel Symsagittifera roscoffensis" (PDF). BioEssays. 40 (10): e1800107. doi:10.1002/bies.201800107. PMID 30151860. S2CID 52095265.
  45. ^ Baumgarten, Sebastian; Simakov, Oleg; Esherick, Lisl Y.; Liew, Yi Jin; Lehnert, Erik M.; Michell, Craig T.; Li, Yong; Hambleton, Elizabeth A.; Guse, Annika; Oates, Matt E.; Gough, Julian; Weis, Virginia M.; Aranda, Manuel; Pringle, John R.; Voolstra, Christian R. (2015). "The genome of Aiptasia, a sea anemone model for coral symbiosis". Proceedings of the National Academy of Sciences. 112 (38): 11893–11898. Bibcode:2015PNAS..11211893B. doi:10.1073/pnas.1513318112. PMC 4586855. PMID 26324906.
  46. ^ Wolfowicz, Iliona; Baumgarten, Sebastian; Voss, Philipp A.; Hambleton, Elizabeth A.; Voolstra, Christian R.; Hatta, Masayuki; Guse, Annika (2016). "Aiptasia sp. Larvae as a model to reveal mechanisms of symbiont selection in cnidarians". Scientific Reports. 6: 32366. Bibcode:2016NatSR...632366W. doi:10.1038/srep32366. PMC 5007887. PMID 27582179.
  47. ^ Ohdera, Aki H.; Abrams, Michael J.; Ames, Cheryl L.; Baker, David M.; Suescún-Bolívar, Luis P.; Collins, Allen G.; Freeman, Christopher J.; Gamero-Mora, Edgar; Goulet, Tamar L.; Hofmann, Dietrich K.; Jaimes-Becerra, Adrian; Long, Paul F.; Marques, Antonio C.; Miller, Laura A.; Mydlarz, Laura D.; Morandini, Andre C.; Newkirk, Casandra R.; Putri, Sastia P.; Samson, Julia E.; Stampar, Sérgio N.; Steinworth, Bailey; Templeman, Michelle; Thomé, Patricia E.; Vlok, Marli; Woodley, Cheryl M.; Wong, Jane C.Y.; Martindale, Mark Q.; Fitt, William K.; Medina, Mónica (2018). "Upside-Down but Headed in the Right Direction: Review of the Highly Versatile Cassiopea xamachana System". Frontiers in Ecology and Evolution. 6. doi:10.3389/fevo.2018.00035. hdl:11449/176281. Material was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
  48. ^ Lehnert, Erik M.; Burriesci, Matthew S.; Pringle, John R. (2012). "Developing the anemone Aiptasia as a tractable model for cnidarian-dinoflagellate symbiosis: The transcriptome of aposymbiotic A. Pallida". BMC Genomics. 13: 271. doi:10.1186/1471-2164-13-271. PMC 3427133. PMID 22726260.
  49. ^ McFall-Ngai, Margaret J. (2014). "The Importance of Microbes in Animal Development: Lessons from the Squid-Vibrio Symbiosis". Annual Review of Microbiology. 68: 177–194. doi:10.1146/annurev-micro-091313-103654. PMC 6281398. PMID 24995875.
  50. ^ Cooper, Matthew B.; Kazamia, Elena; Helliwell, Katherine E.; Kudahl, Ulrich Johan; Sayer, Andrew; Wheeler, Glen L.; Smith, Alison G. (2019). "Cross-exchange of B-vitamins underpins a mutualistic interaction between Ostreococcus tauri and Dinoroseobacter shibae". The ISME Journal. 13 (2): 334–345. doi:10.1038/s41396-018-0274-y. PMC 6331578. PMID 30228381.
  51. ^ Wichard, Thomas (2015). "Exploring bacteria-induced growth and morphogenesis in the green macroalga order Ulvales (Chlorophyta)". Frontiers in Plant Science. 6: 86. doi:10.3389/fpls.2015.00086. PMC 4347444. PMID 25784916.
  52. ^ a b Kessler, Ralf W.; Weiss, Anne; Kuegler, Stefan; Hermes, Cornelia; Wichard, Thomas (2018). "Macroalgal-bacterial interactions: Role of dimethylsulfoniopropionate in microbial gardening by Ulva(Chlorophyta)". Molecular Ecology. 27 (8): 1808–1819. doi:10.1111/mec.14472. PMID 29290092. S2CID 46763098.
  53. ^ Thompson JR, Rivera HE, Closek CJ, Medina M (2014). "Microbes in the coral holobiont: partners through evolution, development, and ecological interactions". Frontiers in Cellular and Infection Microbiology. 4: 176. doi:10.3389/fcimb.2014.00176. PMC 4286716. PMID 25621279.
  54. ^ Zilius, Mindaugas; Bonaglia, Stefano; Broman, Elias; Chiozzini, Vitor Gonsalez; Samuiloviene, Aurelija; Nascimento, Francisco J. A.; Cardini, Ulisse; Bartoli, Marco (2020). "N2 fixation dominates nitrogen cycling in a mangrove fiddler crab holobiont". Scientific Reports. 10 (1): 13966. doi:10.1038/s41598-020-70834-0. PMC 7435186. PMID 32811860. Material was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
  55. ^ Ugarelli K, Chakrabarti S, Laas P, Stingl U (December 2017). "The Seagrass Holobiont and Its Microbiome". Microorganisms. 5 (4): 81. doi:10.3390/microorganisms5040081. PMC 5748590. PMID 29244764. Material was copied from this source, which is available under a [https://creativecommons.org/licenses/by/4.0/ Creative Commons Attribution 4.0 International License
  56. ^ Cavalcanti GS, Shukla P, Morris M, Ribeiro B, Foley M, Doane MP, Thompson CC, Edwards MS, Dinsdale EA, Thompson FL (September 2018). "Rhodoliths holobionts in a changing ocean: host-microbes interactions mediate coralline algae resilience under ocean acidification". BMC Genomics. 19 (1): 701. doi:10.1186/s12864-018-5064-4. PMC 6154897. PMID 30249182. Material was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
  57. ^ a b c Troussellier, Marc; Escalas, Arthur; Bouvier, Thierry; Mouillot, David (2017). "Sustaining Rare Marine Microorganisms: Macroorganisms as Repositories and Dispersal Agents of Microbial Diversity". Frontiers in Microbiology. 8: 947. doi:10.3389/fmicb.2017.00947. PMC 5447324. PMID 28611749.
  58. ^ Bouchard Marmen, Mariève; Kenchington, Ellen; Ardyna, Mathieu; Archambault, Philippe (2017). "Influence of seabird colonies and other environmental variables on benthic community structure, Lancaster Sound Region, Canadian Arctic". Journal of Marine Systems. 167: 105–117. Bibcode:2017JMS...167..105B. doi:10.1016/j.jmarsys.2016.11.021.
  59. ^ Smriga, Steven; Sandin, Stuart A.; Azam, Farooq (2010). "Abundance, diversity, and activity of microbial assemblages associated with coral reef fish guts and feces". FEMS Microbiology Ecology. 73 (1): 31–42. doi:10.1111/j.1574-6941.2010.00879.x. PMID 20455942.
  60. ^ Webster, Nicole S.; Taylor, Michael W.; Behnam, Faris; Lücker, Sebastian; Rattei, Thomas; Whalan, Stephen; Horn, Matthias; Wagner, Michael (2009). "Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts". Environmental Microbiology. 12 (8): 2070–2082. doi:10.1111/j.1462-2920.2009.02065.x. PMC 2936111. PMID 21966903.
  61. ^ a b Burke, C.; Steinberg, P.; Rusch, D.; Kjelleberg, S.; Thomas, T. (2011). "Bacterial community assembly based on functional genes rather than species". Proceedings of the National Academy of Sciences. 108 (34): 14288–14293. Bibcode:2011PNAS..10814288B. doi:10.1073/pnas.1101591108. PMC 3161577. PMID 21825123.
  62. ^ Burke, Catherine; Thomas, Torsten; Lewis, Matt; Steinberg, Peter; Kjelleberg, Staffan (2011). "Composition, uniqueness and variability of the epiphytic bacterial community of the green alga Ulva australis". The ISME Journal. 5 (4): 590–600. doi:10.1038/ismej.2010.164. PMC 3105733. PMID 21048801. S2CID 9982783.
  63. ^ Chiarello, Marlène; Auguet, Jean-Christophe; Bettarel, Yvan; Bouvier, Corinne; Claverie, Thomas; Graham, Nicholas A. J.; Rieuvilleneuve, Fabien; Sucré, Elliot; Bouvier, Thierry; Villéger, Sébastien (2018). "Skin microbiome of coral reef fish is highly variable and driven by host phylogeny and diet". Microbiome. 6 (1): 147. doi:10.1186/s40168-018-0530-4. PMC 6109317. PMID 30143055.
  64. ^ Falkowski, P. G.; Fenchel, T.; Delong, E. F. (2008). "The Microbial Engines That Drive Earth's Biogeochemical Cycles". Science. 320 (5879): 1034–1039. Bibcode:2008Sci...320.1034F. doi:10.1126/science.1153213. PMID 18497287. S2CID 2844984.
  65. ^ Madsen, Eugene L. (2011). "Microorganisms and their roles in fundamental biogeochemical cycles". Current Opinion in Biotechnology. 22 (3): 456–464. doi:10.1016/j.copbio.2011.01.008. PMID 21333523.
  66. ^ Anantharaman, Karthik; Brown, Christopher T.; Hug, Laura A.; Sharon, Itai; Castelle, Cindy J.; Probst, Alexander J.; Thomas, Brian C.; Singh, Andrea; Wilkins, Michael J.; Karaoz, Ulas; Brodie, Eoin L.; Williams, Kenneth H.; Hubbard, Susan S.; Banfield, Jillian F. (2016). "Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system". Nature Communications. 7: 13219. Bibcode:2016NatCo...713219A. doi:10.1038/ncomms13219. PMC 5079060. PMID 27774985.
  67. ^ Thompson, A. W.; Foster, R. A.; Krupke, A.; Carter, B. J.; Musat, N.; Vaulot, D.; Kuypers, M. M. M.; Zehr, J. P. (2012). "Unicellular Cyanobacterium Symbiotic with a Single-Celled Eukaryotic Alga". Science. 337 (6101): 1546–1550. Bibcode:2012Sci...337.1546T. doi:10.1126/science.1222700. PMID 22997339. S2CID 7071725.
  68. ^ Martínez-Pérez, Clara; Mohr, Wiebke; Löscher, Carolin R.; Dekaezemacker, Julien; Littmann, Sten; Yilmaz, Pelin; Lehnen, Nadine; Fuchs, Bernhard M.; Lavik, Gaute; Schmitz, Ruth A.; Laroche, Julie; Kuypers, Marcel M. M. (2016). "The small unicellular diazotrophic symbiont, UCYN-A, is a key player in the marine nitrogen cycle". Nature Microbiology. 1 (11): 16163. doi:10.1038/nmicrobiol.2016.163. PMID 27617976. S2CID 7051606.
  69. ^ Raina, Jean-Baptiste; Tapiolas, Dianne; Willis, Bette L.; Bourne, David G. (2009). "Coral-Associated Bacteria and Their Role in the Biogeochemical Cycling of Sulfur". Applied and Environmental Microbiology. 75 (11): 3492–3501. Bibcode:2009ApEnM..75.3492R. doi:10.1128/AEM.02567-08. PMC 2687302. PMID 19346350.
  70. ^ a b Fiore, Cara L.; Jarett, Jessica K.; Olson, Nathan D.; Lesser, Michael P. (2010). "Nitrogen fixation and nitrogen transformations in marine symbioses". Trends in Microbiology. 18 (10): 455–463. doi:10.1016/j.tim.2010.07.001. PMID 20674366.
  71. ^ Cardini, Ulisse; Bednarz, Vanessa N.; Naumann, Malik S.; Van Hoytema, Nanne; Rix, Laura; Foster, Rachel A.; Al-Rshaidat, Mamoon M. D.; Wild, Christian (2015). "Functional significance of dinitrogen fixation in sustaining coral productivity under oligotrophic conditions". Proceedings of the Royal Society B: Biological Sciences. 282 (1818). doi:10.1098/rspb.2015.2257. PMC 4650168. PMID 26511052.
  72. ^ De Goeij, Jasper M.; Van Oevelen, Dick; Vermeij, Mark J. A.; Osinga, Ronald; Middelburg, Jack J.; De Goeij, Anton F. P. M.; Admiraal, Wim (2013). "Surviving in a Marine Desert: The Sponge Loop Retains Resources within Coral Reefs". Science. 342 (6154): 108–110. Bibcode:2013Sci...342..108D. doi:10.1126/science.1241981. PMID 24092742. S2CID 6720678.
  73. ^ Rix, Laura; Goeij, Jasper M.; Oevelen, Dick; Struck, Ulrich; Al‐Horani, Fuad A.; Wild, Christian; Naumann, Malik S. (2017). "Differential recycling of coral and algal dissolved organic matter via the sponge loop". Functional Ecology. 31 (3): 778–789. doi:10.1111/1365-2435.12758.
  74. ^ Bonaglia, Stefano; Brüchert, Volker; Callac, Nolwenn; Vicenzi, Alessandra; Chi Fru, Ernest; Nascimento, Francisco J. A. (2017). "Methane fluxes from coastal sediments are enhanced by macrofauna". Scientific Reports. 7 (1): 13145. Bibcode:2017NatSR...713145B. doi:10.1038/s41598-017-13263-w. PMC 5640653. PMID 29030563.
  75. ^ Venn, A.A.; Loram, J.E.; Douglas, A.E. (2008). "Photosynthetic symbioses in animals". Journal of Experimental Botany. 59 (5): 1069–1080. doi:10.1093/jxb/erm328. PMID 18267943.
  76. ^ Berkelmans, Ray; Van Oppen, Madeleine J.H (2006). "The role of zooxanthellae in the thermal tolerance of corals: A 'nugget of hope' for coral reefs in an era of climate change". Proceedings of the Royal Society B: Biological Sciences. 273 (1599): 2305–2312. doi:10.1098/rspb.2006.3567. PMC 1636081. PMID 16928632.
  77. ^ Gilbert, Scott F.; McDonald, Emily; Boyle, Nicole; Buttino, Nicholas; Gyi, Lin; Mai, Mark; Prakash, Neelakantan; Robinson, James (2010). "Symbiosis as a source of selectable epigenetic variation: Taking the heat for the big guy". Philosophical Transactions of the Royal Society B: Biological Sciences. 365 (1540): 671–678. doi:10.1098/rstb.2009.0245. PMC 2817139. PMID 20083641.
  78. ^ Dittami, Simon M.; Duboscq-Bidot, Laëtitia; Perennou, Morgan; Gobet, Angélique; Corre, Erwan; Boyen, Catherine; Tonon, Thierry (2016). "Host–microbe interactions as a driver of acclimation to salinity gradients in brown algal cultures". The ISME Journal. 10 (1): 51–63. doi:10.1038/ismej.2015.104. PMC 4681850. PMID 26114888.
  79. ^ Shapira, Michael (2016). "Gut Microbiotas and Host Evolution: Scaling up Symbiosis". Trends in Ecology & Evolution. 31 (7): 539–549. doi:10.1016/j.tree.2016.03.006. PMID 27039196.
  80. ^ Godoy, Oscar; Bartomeus, Ignasi; Rohr, Rudolf P.; Saavedra, Serguei (2018). "Towards the Integration of Niche and Network Theories". Trends in Ecology & Evolution. 33 (4): 287–300. doi:10.1016/j.tree.2018.01.007. hdl:10261/164597. PMID 29471971.
  81. ^ Bright, Monika; Bulgheresi, Silvia (2010). "A complex journey: Transmission of microbial symbionts". Nature Reviews Microbiology. 8 (3): 218–230. doi:10.1038/nrmicro2262. PMC 2967712. PMID 20157340.
  82. ^ Funkhouser, Lisa J.; Bordenstein, Seth R. (2013). "Mom Knows Best: The Universality of Maternal Microbial Transmission". PLOS Biology. 11 (8): e1001631. doi:10.1371/journal.pbio.1001631. PMC 3747981. PMID 23976878.
  83. ^ Björk, Johannes R.; Díez-Vives, Cristina; Astudillo-García, Carmen; Archie, Elizabeth A.; Montoya, José M. (2019). "Vertical transmission of sponge microbiota is inconsistent and unfaithful". Nature Ecology & Evolution. 3 (8): 1172–1183. doi:10.1038/s41559-019-0935-x. PMC 6914380. PMID 31285574.
  84. ^ Brooks, Andrew W.; Kohl, Kevin D.; Brucker, Robert M.; Van Opstal, Edward J.; Bordenstein, Seth R. (2016). "Phylosymbiosis: Relationships and Functional Effects of Microbial Communities across Host Evolutionary History". PLOS Biology. 14 (11): e2000225. doi:10.1371/journal.pbio.2000225. PMC 5115861. PMID 27861590.
  85. ^ Kazamia, Elena; Helliwell, Katherine Emma; Purton, Saul; Smith, Alison Gail (2016). "How mutualisms arise in phytoplankton communities: Building eco‐evolutionary principles for aquatic microbes". Ecology Letters. 19 (7): 810–822. doi:10.1111/ele.12615. PMC 5103174. PMID 27282316.
  86. ^ Pollock, F. Joseph; McMinds, Ryan; Smith, Styles; Bourne, David G.; Willis, Bette L.; Medina, Mónica; Thurber, Rebecca Vega; Zaneveld, Jesse R. (2018). "Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny". Nature Communications. 9 (1): 4921. Bibcode:2018NatCo...9.4921P. doi:10.1038/s41467-018-07275-x. PMC 6250698. PMID 30467310.
  87. ^ Franzenburg, S.; Walter, J.; Kunzel, S.; Wang, J.; Baines, J. F.; Bosch, T. C. G.; Fraune, S. (2013). "Distinct antimicrobial peptide expression determines host species-specific bacterial associations". Proceedings of the National Academy of Sciences. 110 (39): E3730 – E3738. Bibcode:2013PNAS..110E3730F. doi:10.1073/pnas.1304960110. PMC 3785777. PMID 24003149.
  88. ^ Zheng, Danping; Liwinski, Timur; Elinav, Eran (2020). "Interaction between microbiota and immunity in health and disease". Cell Research. 30 (6): 492–506. doi:10.1038/s41422-020-0332-7. PMC 7264227. PMID 32433595.
  89. ^ Lebeis, S. L.; Paredes, S. H.; Lundberg, D. S.; Breakfield, N.; Gehring, J.; McDonald, M.; Malfatti, S.; Glavina Del Rio, T.; Jones, C. D.; Tringe, S. G.; Dangl, J. L. (2015). "Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa". Science. 349 (6250): 860–864. Bibcode:2015Sci...349..860L. doi:10.1126/science.aaa8764. PMID 26184915. S2CID 2914865.
  90. ^ Saha, Mahasweta; Weinberger, Florian (2019). "Microbial "gardening" by a seaweed holobiont: Surface metabolites attract protective and deter pathogenic epibacterial settlement" (PDF). Journal of Ecology. 107 (5): 2255–2265. doi:10.1111/1365-2745.13193. S2CID 165054090.
  91. ^ Ochsenkühn, Michael A.; Schmitt-Kopplin, Philippe; Harir, Mourad; Amin, Shady A. (2018). "Coral metabolite gradients affect microbial community structures and act as a disease cue". Communications Biology. 1: 184. doi:10.1038/s42003-018-0189-1. PMC 6218554. PMID 30417121.
  92. ^ Gribben, Paul E.; Nielsen, Shaun; Seymour, Justin R.; Bradley, Daniel J.; West, Matthew N.; Thomas, Torsten (2017). "Microbial communities in marine sediments modify success of an invasive macrophyte". Scientific Reports. 7 (1): 9845. Bibcode:2017NatSR...7.9845G. doi:10.1038/s41598-017-10231-2. PMC 5575248. PMID 28852143.
  93. ^ a b c d Cirri, Emilio; Pohnert, Georg (2019). "Algae−bacteria interactions that balance the planktonic microbiome". New Phytologist. 223 (1): 100–106. doi:10.1111/nph.15765. PMID 30825329.
  94. ^ Nemergut, Diana R.; Schmidt, Steven K.; Fukami, Tadashi; O'Neill, Sean P.; Bilinski, Teresa M.; Stanish, Lee F.; Knelman, Joseph E.; Darcy, John L.; Lynch, Ryan C.; Wickey, Phillip; Ferrenberg, Scott (2013). "Patterns and Processes of Microbial Community Assembly". Microbiology and Molecular Biology Reviews. 77 (3): 342–356. doi:10.1128/MMBR.00051-12. PMC 3811611. PMID 24006468.
  95. ^ Dini-Andreote, Francisco; Stegen, James C.; Van Elsas, Jan Dirk; Salles, Joana Falcão (2015). "Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession". Proceedings of the National Academy of Sciences. 112 (11): E1326 – E1332. Bibcode:2015PNAS..112E1326D. doi:10.1073/pnas.1414261112. PMC 4371938. PMID 25733885.
  96. ^ Vienne, D. M.; Refrégier, G.; López‐Villavicencio, M.; Tellier, A.; Hood, M. E.; Giraud, T. (2013). "Cospeciation vs host‐shift speciation: Methods for testing, evidence from natural associations and relation to coevolution". New Phytologist. 198 (2): 347–385. doi:10.1111/nph.12150. PMID 23437795.
  97. ^ Peek, A. S.; Feldman, R. A.; Lutz, R. A.; Vrijenhoek, R. C. (1998). "Cospeciation of chemoautotrophic bacteria and deep sea clams". Proceedings of the National Academy of Sciences. 95 (17): 9962–9966. Bibcode:1998PNAS...95.9962P. doi:10.1073/pnas.95.17.9962. PMC 21444. PMID 9707583.
  98. ^ Lanterbecq, Déborah; Rouse, Grey W.; Eeckhaut, Igor (2010). "Evidence for cospeciation events in the host–symbiont system involving crinoids (Echinodermata) and their obligate associates, the myzostomids (Myzostomida, Annelida)". Molecular Phylogenetics and Evolution. 54 (2): 357–371. doi:10.1016/j.ympev.2009.08.011. PMID 19686859.
  99. ^ Zaneveld, Jesse R.; McMinds, Ryan; Vega Thurber, Rebecca (2017). "Stress and stability: Applying the Anna Karenina principle to animal microbiomes". Nature Microbiology. 2 (9): 17121. doi:10.1038/nmicrobiol.2017.121. PMID 28836573. S2CID 37180263.
  100. ^ The Rasputin Effect: When Commensals and Symbionts Become Parasitic. Advances in Environmental Microbiology. Vol. 3. 2016. doi:10.1007/978-3-319-28170-4. ISBN 978-3-319-28168-1. S2CID 7567999.
  101. ^ Egan, Suhelen; Gardiner, Melissa (2016). "Microbial Dysbiosis: Rethinking Disease in Marine Ecosystems". Frontiers in Microbiology. 7: 991. doi:10.3389/fmicb.2016.00991. PMC 4914501. PMID 27446031.
  102. ^ Baker, David M.; Freeman, Christopher J.; Wong, Jane C.Y.; Fogel, Marilyn L.; Knowlton, Nancy (2018). "Climate change promotes parasitism in a coral symbiosis". The ISME Journal. 12 (3): 921–930. doi:10.1038/s41396-018-0046-8. PMC 5864192. PMID 29379177.
  103. ^ Bell, James J.; Rovellini, Alberto; Davy, Simon K.; Taylor, Michael W.; Fulton, Elizabeth A.; Dunn, Matthew R.; Bennett, Holly M.; Kandler, Nora M.; Luter, Heidi M.; Webster, Nicole S. (2018). "Climate change alterations to ecosystem dominance: How might sponge-dominated reefs function?" (PDF). Ecology. 99 (9): 1920–1931. doi:10.1002/ecy.2446. PMID 29989167. S2CID 51609262.

Further references

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