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The study of the '''[[genetics]] and [[archaeogenetics]]''' of the [[Ethnic groups of South Asia|ethnic groups '''of''']] '''[[South Asia]]''' aims at uncovering these groups' [[genetic history]]. The geographic position of India makes Indian populations important for the study of the early dispersal of all human populations on the [[Eurasian continent]].
The study of the '''[[genetics]] and [[archaeogenetics]]''' of the [[Ethnic groups of South Asia|ethnic groups '''of''']] '''[[South Asia]]''' aims at uncovering these groups' [[genetic history]]. The geographic position of India makes Indian populations important for the study of the early dispersal of all human populations on the [[Eurasian continent]].


Studies based on [[mtDNA]] variation have reported genetic unity across various Indian sub–populations.<ref name="Kivisild1999"/><ref name="Baig"/><ref name="Kumar"/><ref>Trends in Molecular Anthropological Studies in India, Vikal Tripathy, A. Nirmala and B. Mohan Reddy, 2008</ref> Conclusions of studies based on Y Chromosome variation and Autosomal DNA variation have been varied, although many researchers argue that most of the ancestral nodes of the phylogenetic tree of all the mtDNA types originated in the subcontinent. Recent genome studies appear to show that most Indians are descendants of Ancestral North Indians (related to Central Asians, Middle Easterners and Europeans) and Ancestral South Indians who are not closely related to external groups.<ref>{{cite journal|last=Moorjani et al|title=Genetic Evidence for Recent Population Mixture in India|journal=The American Journal of Human Genetics|date=2013|url=http://genetics.med.harvard.edu/reich/Reich_Lab/Publications_files/2013_AJHG_Priya_India_Date.pdf}}</ref>
Studies based on [[mtDNA]] variation have reported genetic unity across various Indian sub–populations.<ref name="Kivisild1999"/><ref name="Baig"/><ref name="Kumar"/><ref>Trends in Molecular Anthropological Studies in India, Vikal Tripathy, A. Nirmala and B. Mohan Reddy, 2008</ref> Conclusions of studies based on Y Chromosome variation and Autosomal DNA variation have been varied, although many researchers argue that most of the ancestral nodes of the phylogenetic tree of all the mtDNA types originated in the subcontinent. Recent genome studies appear to show that most Indians are descendants of Ancestral North Indians (related to Central Asians, Middle Easterners and Europeans) and Ancestral South Indians who are not closely related to external groups.<ref>{{cite journal |doi=10.1016/j.ajhg.2013.07.006}}</ref>


It has been found that the ancestral node of the phylogenetic tree of all the [[mtDNA]] types typically found in [[Central Asia]], the [[Middle East]] and [[Europe]] are also to be found in [[South Asia]] at relatively high frequencies. The inferred divergence of this common ancestral node is estimated to have occurred slightly less than 50,000 years ago.<ref name=Kivisild2000a>Toomas Kivisild, Surinder S. Papiha, Siiri Rootsi, Jüri Parik, Katrin Kaldma, Maere Reidla, Sirle Laos, Mait Metspalu, Gerli Pielberg, Maa rja Adojaan, Ene Metspalu, Sarabjit S. Mastana, Yiming Wang, Mukaddes Golge, Halil Demirtas, Eckart Schnakenberg, Gian Franco de Stefano, Tarekegn Geberhiwot, Mireille Claustres & Richard Villems, An Indian Ancestry: a Key for Understanding Human Diversity in Europe and Beyond, 2000, McDonald Institute Monographs [http://evolutsioon.ut.ee/publications/Kivisild2000.pdf]</ref> In India the major maternal lineages, or [[mitochondrial DNA Haplogroup]]s, are [[Haplogroup M (mtDNA)|M]], [[Haplogroup R (mt-DNA)|R]] and [[Haplogroup U (mt-DNA)|U]], whose coalescence times have been approximated to 50,000 BP.<ref name=Kivisild2000a/>
It has been found that the ancestral node of the phylogenetic tree of all the [[mtDNA]] types typically found in [[Central Asia]], the [[Middle East]] and [[Europe]] are also to be found in [[South Asia]] at relatively high frequencies. The inferred divergence of this common ancestral node is estimated to have occurred slightly less than 50,000 years ago.<ref name=Kivisild2000a>Toomas Kivisild, Surinder S. Papiha, Siiri Rootsi, Jüri Parik, Katrin Kaldma, Maere Reidla, Sirle Laos, Mait Metspalu, Gerli Pielberg, Maa rja Adojaan, Ene Metspalu, Sarabjit S. Mastana, Yiming Wang, Mukaddes Golge, Halil Demirtas, Eckart Schnakenberg, Gian Franco de Stefano, Tarekegn Geberhiwot, Mireille Claustres & Richard Villems, An Indian Ancestry: a Key for Understanding Human Diversity in Europe and Beyond, 2000, McDonald Institute Monographs [http://evolutsioon.ut.ee/publications/Kivisild2000.pdf]</ref> In India the major maternal lineages, or [[mitochondrial DNA Haplogroup]]s, are [[Haplogroup M (mtDNA)|M]], [[Haplogroup R (mt-DNA)|R]] and [[Haplogroup U (mt-DNA)|U]], whose coalescence times have been approximated to 50,000 BP.<ref name=Kivisild2000a/>


The major paternal lineages represented by [[Y chromosome]]s are haplogroups [[Haplogroup R1a (Y-DNA)|R1a]], [[Haplogroup R2a (Y-DNA)|R2]], [[Haplogroup H (Y-DNA)|H]], [[Haplogroup L (Y-DNA)|L]] and [[Haplogroup J2 (Y-DNA)|J2]].<ref name=mcDonald>[http://www.scs.uiuc.edu/~mcdonald/WorldHaplogroupsMaps.pdf Y Haplogroups of the World, 2005, McDonald]</ref> Many researchers have argued that Y-DNA Haplogroup R1a1 (M17) is of [[autochthon (person)|autochthon]]ous Indian origin.<ref>[http://www.cell.com/AJHG/abstract/S0002-9297(07)62353-2 AJHG - Polarity and Temporality of High-Resolution Y-Chromosome Distributions in India Identify Both Indigenous and Exogenous Expansions and Reveal Minor Genetic Influence of ...<!-- Bot generated title -->]</ref><ref name=autogenerated1>[http://www.pnas.org/content/103/4/843.full.pdf A prehistory of Indian Y chromosomes: Evaluating demic diffusion scenarios]</ref> However, proposals for a Central Asian origin for R1a1 are also quite common.<ref name="biomedcentral.com">[http://www.biomedcentral.com/1471-2156/7/42 BMC Genetics | Full text | Genetic affinities among the lower castes and tribal groups of India: inference from Y chromosome and mitochondrial DNA<!-- Bot generated title -->]</ref><ref name="ncbi.nlm.nih.gov">[http://www.ncbi.nlm.nih.gov/pubmed/19058044 Presence of three different paternal li... [Ann Hum Biol. 2009 Jan-Feb&#93; - PubMed - NCBI<!-- Bot generated title -->]</ref>
The major paternal lineages represented by [[Y chromosome]]s are haplogroups [[Haplogroup R1a (Y-DNA)|R1a]], [[Haplogroup R2a (Y-DNA)|R2]], [[Haplogroup H (Y-DNA)|H]], [[Haplogroup L (Y-DNA)|L]] and [[Haplogroup J2 (Y-DNA)|J2]].<ref name=mcDonald>[http://www.scs.uiuc.edu/~mcdonald/WorldHaplogroupsMaps.pdf Y Haplogroups of the World, 2005, McDonald]</ref> Many researchers have argued that Y-DNA Haplogroup R1a1 (M17) is of [[autochthon (person)|autochthon]]ous Indian origin.<ref>{{cite journal |doi=10.1086/499411}}</ref><ref name=autogenerated1>{{cite journal |doi=10.1073/pnas.0507714103}}</ref> However, proposals for a Central Asian origin for R1a1 are also quite common.<ref name="biomedcentral.com">{{cite journal |doi=10.1186/1471-2156-7-42}}</ref><ref name="ncbi.nlm.nih.gov">{{cite journal |doi=10.1080/03014460802558522}}</ref>


==mtDNA==
==mtDNA==
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The largest Indian [[Human mitochondrial DNA haplogroup|mtDNA haplogroups]] are [[Haplogroup M (mtDNA)|M]], [[Haplogroup R (mtDNA)|R]] and [[Haplogroup U (mtDNA)|U]] <ref name=mcDonald/>
The largest Indian [[Human mitochondrial DNA haplogroup|mtDNA haplogroups]] are [[Haplogroup M (mtDNA)|M]], [[Haplogroup R (mtDNA)|R]] and [[Haplogroup U (mtDNA)|U]] <ref name=mcDonald/>


Arguing for the longer term "rival Y-Chromosome model",<ref>[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1380230/?tool=pubmed Polarity and Temporality of High-Resolution Y-Chromosome Distributions in India Identify Both Indigenous and Exogenous Expansions and Reveal Minor Genetic Influence of Central Asian Pastoralists]</ref> [[Stephen Oppenheimer]] believes that it is highly suggestive that India is the origin of the [[Eurasia]]n [[mtDNA]] haplogroups which he calls the "Eurasian Eves". According to Oppenheimer it is highly probable that nearly all human maternal lineages in Central Asia, the Middle East and Europe descended from only four mtDNA lines that originated in South Asia 50,000-100,000 years ago.<ref name=Oppenheimer>Stephen Oppenheimer, The Real Eve: Modern Man's Journey Out of Africa,2004</ref>
Arguing for the longer term "rival Y-Chromosome model",<ref>{{cite journal |doi=10.1086/499411}}</ref> [[Stephen Oppenheimer]] believes that it is highly suggestive that India is the origin of the [[Eurasia]]n [[mtDNA]] haplogroups which he calls the "Eurasian Eves". According to Oppenheimer it is highly probable that nearly all human maternal lineages in Central Asia, the Middle East and Europe descended from only four mtDNA lines that originated in South Asia 50,000-100,000 years ago.<ref name=Oppenheimer>Stephen Oppenheimer, The Real Eve: Modern Man's Journey Out of Africa,2004{{pn}}</ref>


===Macrohaplogroup M===
===Macrohaplogroup M===
The [[Haplogroup M (mtDNA)|macrohaplogroup M]] which is considered as a cluster of the proto-Asian maternal lineages,<ref name =Kivisild2000a/> represents more than 60% of Indian MtDNA.<ref name= thangaraj2006>Kumarasamy Thangaraj, Gyaneshwer Chaubey, Vijay Kumar Singh, Ayyasamy Vanniarajan, Ismail Thanseem, Alla G Reddy and [[Lalji Singh]], In situ origin of deep rooting lineages of mitochondrial Macrohaplogroup 'M' in India, 2006 [http://www.biomedcentral.com/content/pdf/1471-2164-7-151.pdf]</ref>
The [[Haplogroup M (mtDNA)|macrohaplogroup M]] which is considered as a cluster of the proto-Asian maternal lineages,<ref name =Kivisild2000a/> represents more than 60% of Indian MtDNA.<ref name= thangaraj2006>{{cite journal |doi=10.1186/1471-2164-7-15}}</ref>


The M macrohaplotype in India includes many subgroups that differ profoundly from other sublineages in East Asia especially Mongoloid populations.<ref name =Kivisild2000a/> The deep roots of M phylogeny clearly ascertain the relic of Indian lineages as compared to other M sub lineages (in East Asia and elsewhere) suggesting 'in-situ' origin of these sub-haplogroups in South Asia, most likely in India. These deep rooting lineages are not language specific and spread over all the language groups in India.<ref name=thangaraj2006/>
The M macrohaplotype in India includes many subgroups that differ profoundly from other sublineages in East Asia especially Mongoloid populations.<ref name =Kivisild2000a/> The deep roots of M phylogeny clearly ascertain the relic of Indian lineages as compared to other M sub lineages (in East Asia and elsewhere) suggesting 'in-situ' origin of these sub-haplogroups in South Asia, most likely in India. These deep rooting lineages are not language specific and spread over all the language groups in India.<ref name=thangaraj2006/>
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Virtually all modern Central Asian MtDNA M lineages seem to belong to the Eastern Eurasian ([[Mongoloid|Mongolian]]) rather than the Indian subtypes of haplogroup M, which indicates that no large-scale migration from the present [[Turkic languages|Turkic]]-speaking populations of Central Asia occurred to India. The absence of haplogroup M in Europeans, compared to its equally high frequency among Indians, eastern Asians and in some Central Asian populations contrasts with the Western Eurasian leanings of South Asian paternal lineages.<ref name =Kivisild2000a/>
Virtually all modern Central Asian MtDNA M lineages seem to belong to the Eastern Eurasian ([[Mongoloid|Mongolian]]) rather than the Indian subtypes of haplogroup M, which indicates that no large-scale migration from the present [[Turkic languages|Turkic]]-speaking populations of Central Asia occurred to India. The absence of haplogroup M in Europeans, compared to its equally high frequency among Indians, eastern Asians and in some Central Asian populations contrasts with the Western Eurasian leanings of South Asian paternal lineages.<ref name =Kivisild2000a/>


Most of the extant mtDNA boundaries in South and Southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans.<ref name="Metspalu">[http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=15339343: Nait Metspalu et al., ''Most of the extant mtDNA boundaries in South and Southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans''. ''BMC Genetics'', 2004.]</ref>
Most of the extant mtDNA boundaries in South and Southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans.<ref name="Metspalu">{{cite journal |doi=10.1186/1471-2156-5-26}}</ref>


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{| class="wikitable sortable" style="text-align:left; font-size: 90%"
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====India====
====India====
Haplogroup L shows time of neolithic expansion.<ref name="plosone.org">[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0015283 PLOS ONE: The Influence of Natural Barriers in Shaping the Genetic Structure of Maharashtra Populations<!-- Bot generated title -->]</ref> The clade is present in the Indian population at an overall frequency of ca.7-15%.<ref>(Basu ''et al.'' 2003, Cordaux ''et al.'' 2004, Sengupta ''et al.'' 2006, Thamseem ''et al.'' 2006)</ref> The presence of haplogroup L is quite rare among tribal groups (ca. 5,6-7%) (Cordaux ''et al.'' 2004, Sengupta ''et al.'' 2006, Thamseem ''et al.'' 2006)
Haplogroup L shows time of neolithic expansion.<ref name="plosone.org">{{cite journal |doi=10.1371/journal.pone.0015283}}</ref> The clade is present in the Indian population at an overall frequency of ca.7-15%.<ref>(Basu ''et al.'' 2003, Cordaux ''et al.'' 2004, Sengupta ''et al.'' 2006, Thamseem ''et al.'' 2006)</ref> The presence of haplogroup L is quite rare among tribal groups (ca. 5,6-7%) (Cordaux ''et al.'' 2004, Sengupta ''et al.'' 2006, Thamseem ''et al.'' 2006)


Earlier studies (e.g. Wells et al. 2001) report a very high frequency (approaching 50%) of Haplogroup L in South India appear to have been due to extrapolation from data obtained from a sample of 84 [[yadavas(caste)|yadavas]] and [[Kallar(caste)|Kallars]], a [[Tamil language|Tamil]]-speaking caste of [[Tamil Nadu]], among whom 40 (approx. 48%) displayed the M20 mutation that defines Haplogroup L.
Earlier studies (e.g. Wells et al. 2001) report a very high frequency (approaching 50%) of Haplogroup L in South India appear to have been due to extrapolation from data obtained from a sample of 84 [[yadavas(caste)|yadavas]] and [[Kallar(caste)|Kallars]], a [[Tamil language|Tamil]]-speaking caste of [[Tamil Nadu]], among whom 40 (approx. 48%) displayed the M20 mutation that defines Haplogroup L.
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Haplogroup L3 (M357) is found frequently among [[Burusho people|Burusho]] (approx. 12%<ref name=Firasat2007/>) and [[Pashtun people|Pashtuns]] (approx. 7%<ref name=Firasat2007/>), with a moderate distribution among the general Pakistani population (approx. 2%<ref name=Firasat2007/>). Its highest frequency can be found in south western [[Balochistan (Pakistan)|Balochistan]] province along the [[Makran]] coast (28%) to [[Indus River]] delta.
Haplogroup L3 (M357) is found frequently among [[Burusho people|Burusho]] (approx. 12%<ref name=Firasat2007/>) and [[Pashtun people|Pashtuns]] (approx. 7%<ref name=Firasat2007/>), with a moderate distribution among the general Pakistani population (approx. 2%<ref name=Firasat2007/>). Its highest frequency can be found in south western [[Balochistan (Pakistan)|Balochistan]] province along the [[Makran]] coast (28%) to [[Indus River]] delta.


L3a (PK3) is found in approximately 23% of [[Nuristani people|Nuristani]] in northwest [[Pakistan]].<ref name=Firasat2007>{{cite journal |author=Firasat S, Khaliq S, Mohyuddin A, ''et al.'' |title=Y-chromosomal evidence for a limited Greek contribution to the Pathan population of Pakistan |journal=Eur. J. Hum. Genet. |volume=15 |issue=1 |pages=121–6 |year=2007 |month=January |pmid=17047675 |pmc=2588664 |doi=10.1038/sj.ejhg.5201726 |url=http://www.nature.com/ejhg/journal/v15/n1/full/5201726a.html |ref=harv}}</ref>
L3a (PK3) is found in approximately 23% of [[Nuristani people|Nuristani]] in northwest [[Pakistan]].<ref name=Firasat2007>{{cite journal |doi=10.1038/sj.ejhg.5201726 |ref=harv}}</ref>


===Haplogroup H===
===Haplogroup H===
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This haplogroup is found at a high frequency in [[South Asia]]. It is generally rare outside of the [[South Asia]] but is common among the [[Romani people]], particularly the H-M82 subgroup. Haplogroup H is frequently found among populations of [[India]], [[Sri Lanka]], [[Nepal]], [[Pakistan]] and [[Maldives]].
This haplogroup is found at a high frequency in [[South Asia]]. It is generally rare outside of the [[South Asia]] but is common among the [[Romani people]], particularly the H-M82 subgroup. Haplogroup H is frequently found among populations of [[India]], [[Sri Lanka]], [[Nepal]], [[Pakistan]] and [[Maldives]].


It is a branch of [[Haplogroup F (Y-DNA)|Haplogroup F]], and is believed to have arisen in India between 20,000 and 30,000 years ago. Its probable site of introduction is India since it is concentrated there. It seems to represent the main Y-haplogroup of the indigenous paleolithic inhabitants of India, because it is the most frequent Y-haplogroup of tribal and lower caste populations (25-35%). Its presence in upper castes is rare (ca. 10%).<ref>{{cite journal |author=Cordaux R, ''et al.'' |title=Independent Origins of Indian Caste and Tribal Paternal Lineages |journal=Current Biology |volume=14 |pages=231–5 |year=2004 |pmid=14761656 |issue=3 |doi=10.1016/j.cub.2004.01.024}}</ref><ref name = "Sengupta2006">{{cite journal |author=Sengupta S, Zhivotovsky LA, King R, ''et al.'' |title=Polarity and temporality of high-resolution y-chromosome distributions in India identify both indigenous and exogenous expansions and reveal minor genetic influence of Central Asian pastoralists |journal=Am. J. Hum. Genet. |volume=78 |issue=2 |pages=202–21 |year=2006 |month=February |pmid=16400607 |pmc=1380230 |doi=10.1086/499411 |url=http://linkinghub.elsevier.com/retrieve/pii/S0002-9297(07)62353-2}}</ref><ref>{{cite journal |author=Thanseem I, Thangaraj K, Chaubey G, ''et al.'' |title=Genetic affinities among the lower castes and tribal groups of India: inference from Y chromosome and mitochondrial DNA |journal=BMC Genet. |volume=7 |page=42 |year=2006 |pmid=16893451 |pmc=1569435 |doi=10.1186/1471-2156-7-42 |url=http://www.biomedcentral.com/1471-2156/7/42}}</ref>
It is a branch of [[Haplogroup F (Y-DNA)|Haplogroup F]], and is believed to have arisen in India between 20,000 and 30,000 years ago. Its probable site of introduction is India since it is concentrated there. It seems to represent the main Y-haplogroup of the indigenous paleolithic inhabitants of India, because it is the most frequent Y-haplogroup of tribal and lower caste populations (25-35%). Its presence in upper castes is rare (ca. 10%).<ref>{{cite journal |doi=10.1016/j.cub.2004.01.024}}</ref><ref name = "Sengupta2006">{{cite journal |doi=10.1086/499411}}</ref><ref>{{cite journal |doi=10.1186/1471-2156-7-42}}</ref>


===Haplogroup R2===
===Haplogroup R2===
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Among tribal groups, [[Lodha (tribe)|Lodhas]] of [[West Bengal]] show it at 43% while [[Bhil]] of [[Gujarat]] at 18%. [[Chenchu]] and [[Pallan]] of South India at 20% and 14% respectively. [[Tharu people|Tharu]] of [[North India]] shows it at 17%.{{citation needed|date=April 2013}}
Among tribal groups, [[Lodha (tribe)|Lodhas]] of [[West Bengal]] show it at 43% while [[Bhil]] of [[Gujarat]] at 18%. [[Chenchu]] and [[Pallan]] of South India at 20% and 14% respectively. [[Tharu people|Tharu]] of [[North India]] shows it at 17%.{{citation needed|date=April 2013}}


North Indian Muslims have a frequency of 11%(Sunni) and 9%(Shia), while Dawoodi Bohra Muslim in the western state of Gujarat have a frequency of 16% and Mappla Muslims of South India have a frequency of 5%.<ref>{{cite journal|title=Traces of sub-Saharan and Middle Eastern lineages in Indian Muslim populations|author=Muthukrishnan Eaaswarkhanth, Ikramul Haque, Zeinab Ravesh, Irene Gallego Romero, Poorlin Ramakodi Meganathan, Bhawna Dubey, Faizan Ahmed Khan, Gyaneshwer Chaubey, Toomas Kivisild, Chris Tyler-Smith, [[Lalji Singh]] and Kumarasamy Thangaraj|ref=harv | pmid=19809480|year=2010|volume=18|issue=3|pages=354–63|doi=10.1038/ejhg.2009.168|pmc=2859343|journal=[[European Journal of Human Genetics]]}}</ref> This lineage also forms 5% of [[Punjabi people|Punjabi]] males.
North Indian Muslims have a frequency of 11%(Sunni) and 9%(Shia), while Dawoodi Bohra Muslim in the western state of Gujarat have a frequency of 16% and Mappla Muslims of South India have a frequency of 5%.<ref>{{cite journal |doi=10.1038/ejhg.2009.168}}</ref> This lineage also forms 5% of [[Punjabi people|Punjabi]] males.


====Pakistan====
====Pakistan====
The R2 haplogroup is found in 14% of the [[Burusho people]].<ref>{{cite journal|title=Y-chromosomal evidence for a limited Greek contribution to the Pathan population of Pakistan|author=Firasat S, Khaliq S, Mohyuddin A, Papaioannou M, Tyler-Smith C, Underhill PA, Ayub Q|ref=harv}}</ref> Among the [[Hunza people|Hunza]] it is found at 18% while the [[Parsi]]s show it at 20%.
The R2 haplogroup is found in 14% of the [[Burusho people]].<ref>{{cite journal |doi=10.1038/sj.ejhg.5201726 |ref=harv}}</ref> Among the [[Hunza people|Hunza]] it is found at 18% while the [[Parsi]]s show it at 20%.


====Sri Lanka====
====Sri Lanka====
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{{Main|Haplogroup R1a1 (Y-DNA)}}
{{Main|Haplogroup R1a1 (Y-DNA)}}
In South Asia R1a1 has been observed often with high frequency in a number of demographic groups.<ref name="Sengupta et al. 2005">{{Harvcoltxt|Sengupta et al.|2005}}</ref><ref name="Sahoo et al. 2006">{{Harvcoltxt|Sahoo et al.|2006}}</ref>
In South Asia R1a1 has been observed often with high frequency in a number of demographic groups.<ref name="Sengupta et al. 2005">{{Harvcoltxt|Sengupta et al.|2005}}</ref><ref name="Sahoo et al. 2006">{{Harvcoltxt|Sahoo et al.|2006}}</ref>
Its parent clade Haplogroup R1a is believed to have its origins in the Indus Valley or the Eurasian Steppe,<ref>[http://www.isogg.org/tree/ISOGG_HapgrpR.html ISOGG 2012 Y-DNA Haplogroup R<!-- Bot generated title -->]</ref> whereas its successor clade R1a1 has the highest frequency and time depth in South Asia, making it a possible locus of origin.<ref>[http://www.nature.com/ejhg/journal/v18/n4/full/ejhg2009194a.html European Journal of Human Genetics - Separating the post-Glacial coancestry of European and Asian Y chromosomes within haplogroup R1a<!-- Bot generated title -->]</ref>
Its parent clade Haplogroup R1a is believed to have its origins in the Indus Valley or the Eurasian Steppe,<ref>[http://www.isogg.org/tree/ISOGG_HapgrpR.html ISOGG 2012 Y-DNA Haplogroup R<!-- Bot generated title -->]</ref> whereas its successor clade R1a1 has the highest frequency and time depth in South Asia, making it a possible locus of origin.<ref>{{cite journal |doi=10.1038/ejhg.2009.194}}</ref><ref>{{cite journal |doi=10.1038/jhg.2008.2}}</ref><ref>{{cite journal |doi=10.1038/ejhg.2009.6}}</ref> However, the uneven distribution of this haplogroup among South Asian castes and tribal populations makes a Central Eurasian origin of this lineage a strong possibility as well.<ref name="biomedcentral.com"/><ref name="ncbi.nlm.nih.gov"/>
<ref>http://www.nature.com/jhg/journal/v54/n1/full/jhg20082a.html</ref>
<ref>[http://www.nature.com/ejhg/journal/v17/n10/full/ejhg20096a.html European Journal of Human Genetics - Y-Chromosome distribution within the geo-linguistic landscape of northwestern Russia<!-- Bot generated title -->]</ref> However, the uneven distribution of this haplogroup among South Asian castes and tribal populations makes a Central Eurasian origin of this lineage a strong possibility as well.<ref name="biomedcentral.com"/><ref name="ncbi.nlm.nih.gov"/>


====India====
====India====
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===mtDNA variation===
===mtDNA variation===
Most of the studies based on mtDNA variation have reported genetic unity of Indian populations across language, caste and tribal groups.<ref name="Kivisild1999">[http://www.ebc.ee/EVOLUTSIOON/publications/Kivisild1999b.pdf Indian populations in the polarity of East and West Eurasian materna<!-- Bot generated title -->]</ref><ref name="Baig">[http://onlinelibrary.wiley.com/doi/10.1046/j.1529-8817.2004.00108.x/full Mitochondrial DNA Diversity in Tribal and Caste Groups of Maharashtra (India) and its Implication on Their Genetic Origins - Baig - 2004 - Annals of Human Genetics - Wiley Onl...<!-- Bot generated title -->]</ref><ref name="Kumar">{{cite book|last=Singh|first=Ashok Kumar|title=Science & Technology For Upsc|url=http://books.google.com/books?id=CzV1MgFH6oMC&pg=PA595|year=2007|publisher=Tata McGraw-Hill Education|isbn=978-0-07-065548-5|page=595}}</ref> It is likely that haplogroup M was brought to Asia from East Africa along the southern route by earliest migration wave 60,000 years ago.<ref name="Kivisild1999"/>
Most of the studies based on mtDNA variation have reported genetic unity of Indian populations across language, caste and tribal groups.<ref name="Kivisild1999">{{cite journal |doi=10.1007/978-1-4615-4263-6_11}}</ref><ref name="Baig">{{cite journal |doi=10.1046/j.1529-8817.2004.00108.x}}</ref><ref name="Kumar">{{cite book|last=Singh|first=Ashok Kumar|title=Science & Technology For Upsc|url=http://books.google.com/books?id=CzV1MgFH6oMC&pg=PA595|year=2007|publisher=Tata McGraw-Hill Education|isbn=978-0-07-065548-5|page=595}}</ref> It is likely that haplogroup M was brought to Asia from East Africa along the southern route by earliest migration wave 60,000 years ago.<ref name="Kivisild1999"/>


According to Kivisild et al. 1999, "Minor overlaps with lineages described in other Eurasian populations clearly demonstrate that recent immigrations have had very little impact on the innate structure of the maternal gene pool of Indians. Despite the variations found within India, these populations stem from a limited number of founder lineages. These lineages were most likely introduced to the Indian subcontinent during the Middle Palaeolithic, before the peopling of Europe and perhaps the Old World in general."<ref name="Kivisild1999"/> Basu et al. (2003) also emphasizes underlying unity of female lineages in India.<ref name="Basu2003">[http://genome.cshlp.org/content/13/10/2277.full Ethnic India: A Genomic View, With Special Reference to Peopling and Structure<!-- Bot generated title -->]</ref>
According to Kivisild et al. 1999, "Minor overlaps with lineages described in other Eurasian populations clearly demonstrate that recent immigrations have had very little impact on the innate structure of the maternal gene pool of Indians. Despite the variations found within India, these populations stem from a limited number of founder lineages. These lineages were most likely introduced to the Indian subcontinent during the Middle Palaeolithic, before the peopling of Europe and perhaps the Old World in general."<ref name="Kivisild1999"/> Basu et al. (2003) also emphasizes underlying unity of female lineages in India.<ref name="Basu2003">{{cite journal |doi=10.1101/gr.1413403}}</ref>


===Y Chromosome variation===
===Y Chromosome variation===
Conclusions based on Y Chromosome variation have been more varied than those based on mtDNA variation. While Kivisild et al. (2003) proposes an ancient and shared genetic heritage of male lineages in India,<ref name="Kivisild2003">[http://www.ebc.ee/EVOLUTSIOON/publications/Kivisild2003a.pdf Kivisild 2003 The Genetics of Language and Farming Spread in India.In.Examining the farming-language dispersal hypothesis<!-- Bot generated title -->]</ref> Bamshad et al. (2001) suggests an affinity between Indian male lineages and west Eurasians proportionate to caste rank and places caste populations of southern Indian states closer to East Europeans.<ref>[http://evolutsioon.ut.ee/publications/Bamshad2001.pdf Genetic Evidence on the Origins of Indian Caste Populations<!-- Bot generated title -->]</ref>
Conclusions based on Y Chromosome variation have been more varied than those based on mtDNA variation. While Kivisild et al. (2003) proposes an ancient and shared genetic heritage of male lineages in India,<ref name="Kivisild2003">[http://www.ebc.ee/EVOLUTSIOON/publications/Kivisild2003a.pdf Kivisild 2003 The Genetics of Language and Farming Spread in India.In.Examining the farming-language dispersal hypothesis<!-- Bot generated title -->]</ref> Bamshad et al. (2001) suggests an affinity between Indian male lineages and west Eurasians proportionate to caste rank and places caste populations of southern Indian states closer to East Europeans.<ref>[http://evolutsioon.ut.ee/publications/Bamshad2001.pdf Genetic Evidence on the Origins of Indian Caste Populations<!-- Bot generated title -->]</ref>


Basu et al. (2003) concludes that Austro–Asiatic tribal populations entered India first from the Northwest corridor and much later some of them through Northeastern corridor.<ref name="Basu2003"/> Whereas, Kumar et al. (2007) analyzed 25 Indian Austro-Asiatic tribes and found strong paternal genetic link among the sub-linguistic groups of the Indian Austro-Asiatic populations.<ref>[http://www.biomedcentral.com/1471-2148/7/47 Y-chromosome evidence suggests a common paternal heritage of Austro-Asiatic populations]</ref> Mukherjee et al. (2001) places North Indians between west Asian and Central Asian populations,<ref>{{cite web|url=http://www.springerlink.com/index/QW238444X1Q3128H.pdf |title=High-resolution analysis of Y-chromosomal polymorphisms reveals signatures of population movements from central Asia and West Asia into India - Springer |publisher=Springerlink.com |date=2001-12-01 |accessdate=2012-12-14}}</ref> whereas Cordaux et al. (2004) argues that the Indian caste populations are closer to Central Asian populations.<ref>[http://www.sciencedirect.com/science/article/pii/S0960982204000405 ScienceDirect.com - Current Biology - Independent Origins of Indian Caste and Tribal Paternal Lineages<!-- Bot generated title -->]</ref> Sahoo et al. (2006) and
Basu et al. (2003) concludes that Austro–Asiatic tribal populations entered India first from the Northwest corridor and much later some of them through Northeastern corridor.<ref name="Basu2003"/> Whereas, Kumar et al. (2007) analyzed 25 Indian Austro-Asiatic tribes and found strong paternal genetic link among the sub-linguistic groups of the Indian Austro-Asiatic populations.<ref>{{cite journal |doi=10.1186/1471-2148-7-47}}</ref> Mukherjee et al. (2001) places North Indians between west Asian and Central Asian populations,<ref>{{cite journal |doi=10.1007/BF02717908}}</ref> whereas Cordaux et al. (2004) argues that the Indian caste populations are closer to Central Asian populations.<ref>{{cite journal |doi=10.1016/j.cub.2004.01.024}}</ref> Sahoo et al. (2006) and Sengupata et al. (2006) suggest that Indian caste populations have not been subject to any recent admixtures.<ref name=autogenerated1 /><ref>{{cite journal |doi=10.1086/499411}}</ref> Sanghamitra Sahoo concludes his study with:<ref name=autogenerated1 />
{{Quote|It is not necessary, based on the current evidence, to look beyond South Asia for the origins of the paternal heritage of the majority of Indians at the time of the onset of settled agriculture. The perennial concept of people, language, and agriculture arriving to India together through the northwest corridor does not hold up to close scrutiny. Recent claims for a linkage of haplogroups J2, L, R1a, and R2 with a contemporaneous origin for the majority of the Indian castes’ paternal lineages from outside the subcontinent are rejected, although our findings do support a local origin of haplogroups F* and H. Of the others, only J2 indicates an unambiguous recent external contribution, from West Asia rather than Central Asia. The current distributions of haplogroup frequencies are, with the exception of the lineages, predominantly driven by geographical, rather than cultural determinants. Ironically, it is in the northeast of India, among the TB groups that there is clear-cut evidence for large-scale demic diffusion traceable by genes, culture, and language, but apparently not by agriculture.}}
Sengupata et al. (2006) suggest that Indian caste populations have not been subject to any recent admixtures.<ref name=autogenerated1 /><ref>[http://www.sciencedirect.com/science/article/pii/S0002929707623532 AJHG - Polarity and Temporality of High-Resolution Y-Chromosome Distributions in India Identify Both Indigenous and Exogenous Expansions and Reveal Minor Genetic Influence of ...<!-- Bot generated title -->]</ref> Sanghamitra Sahoo concludes his study with:<ref name=autogenerated1 />
{{Quote|It is not necessary, based on the current evidence, to look beyond South Asia for the origins of the paternal heritage of the majority of Indians at the time of the onset of settled agriculture. The perennial concept of people, language, and agriculture arriving
to India together through the northwest corridor does not hold up to close scrutiny. Recent claims for a linkage of haplogroups J2, L, R1a, and R2 with a contemporaneous origin for the majority of the Indian castes’ paternal lineages from outside the subcontinent are rejected, although our findings do support a local origin of haplogroups F* and H. Of the others, only J2 indicates an unambiguous recent external contribution, from West Asia rather than Central Asia. The current distributions of haplogroup frequencies are, with the exception of the lineages, predominantly driven by geographical, rather than cultural determinants. Ironically, it is in the northeast of India, among the TB groups that there is clear-cut evidence for large-scale demic diffusion traceable by genes, culture, and language, but apparently not by agriculture.}}


===Autosomal DNA variation===
===Autosomal DNA variation===
Results of studies based upon autosomal DNA variation have also been varied. In a major study (2009) using over 500,000 biallelic autosomal markers, Reich hypothesized that the modern Indian population was the result of admixture between two genetically divergent ancestral populations dating from the post-Holocene era. These two "reconstructed" ancient populations he termed "Ancestral South Indians" (ASI) and "Ancestral North Indians" (ANI). According to Reich: "ANI ancestry is significantly higher in Indo-European than Dravidian speakers, suggesting that the ancestral ASI may have spoken a Dravidian language before mixing with the ANI."<ref name="nature.com">[http://www.nature.com/nature/journal/v461/n7263/abs/nature08365.html Reconstructing Indian population history : Abstract : Nature<!-- Bot generated title -->]</ref>
Results of studies based upon autosomal DNA variation have also been varied. In a major study (2009) using over 500,000 biallelic autosomal markers, Reich hypothesized that the modern Indian population was the result of admixture between two genetically divergent ancestral populations dating from the post-Holocene era. These two "reconstructed" ancient populations he termed "Ancestral South Indians" (ASI) and "Ancestral North Indians" (ANI). According to Reich: "ANI ancestry is significantly higher in Indo-European than Dravidian speakers, suggesting that the ancestral ASI may have spoken a Dravidian language before mixing with the ANI."<ref name="nature.com">{{cite journal |doi=10.1038/nature08365}}</ref>


Further building on Reich et al.'s characterization of the South Asian population as historically based on admixture of ANI (Ancestral North Indian) and ASI (Ancestral South Indian) populations, a 2011 session paper by Moorjani et al. states that a "major ANI-ASI mixture occurred in the ancestors of both northern and southern Indians 1,200-3,500 years ago, overlapping the time when Indo-European languages first began to be spoken in the subcontinent."<ref>[http://www.ichg2011.org/cgi-bin/showdetail.pl?absno=20758 Abstract/Presentation<!-- Bot generated title -->]</ref>
Further building on Reich et al.'s characterization of the South Asian population as historically based on admixture of ANI (Ancestral North Indian) and ASI (Ancestral South Indian) populations, a 2011 session paper by Moorjani et al. states that a "major ANI-ASI mixture occurred in the ancestors of both northern and southern Indians 1,200-3,500 years ago, overlapping the time when Indo-European languages first began to be spoken in the subcontinent."<ref>[http://www.ichg2011.org/cgi-bin/showdetail.pl?absno=20758 Abstract/Presentation<!-- Bot generated title -->]</ref>


Basu et al. (2003) suggests concludes that "Dravidian tribals were possibly widespread throughout India before the arrival of the Indo-European-speaking nomads" and that "formation of populations by fission that resulted in founder and drift effects have left their imprints on the genetic structures of contemporary populations".<ref name="Basu2003"/> The geneticist PP Majumder (2010) has recently argued that the findings of Reich et al. (2009) are in remarkable concordance with previous research using mtDNA and Y-DNA:<ref>[http://www.sciencedirect.com/science/article/pii/S0960982209020685/ The Human Genetic History of South Asia]</ref>
Basu et al. (2003) suggests concludes that "Dravidian tribals were possibly widespread throughout India before the arrival of the Indo-European-speaking nomads" and that "formation of populations by fission that resulted in founder and drift effects have left their imprints on the genetic structures of contemporary populations".<ref name="Basu2003"/> The geneticist PP Majumder (2010) has recently argued that the findings of Reich et al. (2009) are in remarkable concordance with previous research using mtDNA and Y-DNA:<ref>{{cite journal |doi=10.1016/j.cub.2009.11.053}}</ref>
{{Quote|Central Asian populations are supposed to have been major contributors to the Indian gene pool, particularly to the northern Indian gene pool, and the migrants had supposedly moved into India through what is now Afghanistan and Pakistan. Using mitochondrial DNA variation data collated from various studies, we have shown that populations of Central Asia and Pakistan show the lowest coefficient of genetic differentiation with the north Indian populations, a higher differentiation with the south Indian populations, and the highest with the northeast Indian populations. Northern Indian populations are genetically closer to Central Asians than populations of other geographical regions of India... . Consistent with the above findings, a recent study using over 500,000 biallelic autosomal markers has found a north to south gradient of genetic proximity of Indian populations to western Eurasians. This feature is likely related to the proportions of ancestry derived from the western Eurasian gene pool, which, as this study has shown, is greater in populations inhabiting northern India than those inhabiting southern India.}}
{{Quote|Central Asian populations are supposed to have been major contributors to the Indian gene pool, particularly to the northern Indian gene pool, and the migrants had supposedly moved into India through what is now Afghanistan and Pakistan. Using mitochondrial DNA variation data collated from various studies, we have shown that populations of Central Asia and Pakistan show the lowest coefficient of genetic differentiation with the north Indian populations, a higher differentiation with the south Indian populations, and the highest with the northeast Indian populations. Northern Indian populations are genetically closer to Central Asians than populations of other geographical regions of India... . Consistent with the above findings, a recent study using over 500,000 biallelic autosomal markers has found a north to south gradient of genetic proximity of Indian populations to western Eurasians. This feature is likely related to the proportions of ancestry derived from the western Eurasian gene pool, which, as this study has shown, is greater in populations inhabiting northern India than those inhabiting southern India.}}


==== Genetic distance between caste groups and tribes ====
==== Genetic distance between caste groups and tribes ====
However, studies by Watkins et al. (2005) and Kivisild et al. (2003) based on autosomal markers conclude that Indian caste and tribal populations have a common ancestry.<ref name="Kivisild2003"/><ref>[http://onlinelibrary.wiley.com/doi/10.1046/j.1529-8817.2005.00200.x/full Diversity and Divergence Among the Tribal Populations of India - Watkins - 2005 - Annals of Human Genetics - Wiley Online Library<!-- Bot generated title -->]</ref> Reddy et al. (2005) found fairly uniform allele frequency distributions across caste groups of southern [[Andhra Pradesh]], but significantly larger genetic distance between caste groups and tribes indicating genetic isolation of the tribes and castes.<ref>[http://muse.jhu.edu/journals/hub/summary/v077/77.6reddy.html Microsatellite Diversity in Andhra Pradesh, India: Genetic Stratification Versus Social Stratification]</ref>
However, studies by Watkins et al. (2005) and Kivisild et al. (2003) based on autosomal markers conclude that Indian caste and tribal populations have a common ancestry.<ref name="Kivisild2003"/><ref>{{cite journal |doi=10.1046/j.1529-8817.2005.00200.x}}</ref> Reddy et al. (2005) found fairly uniform allele frequency distributions across caste groups of southern [[Andhra Pradesh]], but significantly larger genetic distance between caste groups and tribes indicating genetic isolation of the tribes and castes.<ref>{{cite journal |doi=10.1353/hub.2006.0018}}</ref>


Viswanathan et al. (2004) in a study on genetic structure and affinities among tribal populations of southern India concludes, "Genetic differentiation was high and genetic distances were not significantly correlated with geographic distances. Genetic drift therefore probably played a significant role in shaping the patterns of genetic variation observed in southern Indian tribal populations. Otherwise, analyses of population relationships showed that Indian populations are closely related to one another, regardless of phenotypic characteristics, and do not show particular affinities to Africans. We conclude that the phenotypic similarities of some Indian groups to Africans do not reflect a close relationship between these groups, but are better explained by convergence."<ref>[http://onlinelibrary.wiley.com/doi/10.1046/j.1529-8817.2003.00083.x/full Genetic structure and affinities among tribal populations of southern India: a study of 24 autosomal DNA markers - Vishwanathan - 2004 - Annals of Human Genetics - Wiley Onlin...<!-- Bot generated title -->]</ref>
Viswanathan et al. (2004) in a study on genetic structure and affinities among tribal populations of southern India concludes, "Genetic differentiation was high and genetic distances were not significantly correlated with geographic distances. Genetic drift therefore probably played a significant role in shaping the patterns of genetic variation observed in southern Indian tribal populations. Otherwise, analyses of population relationships showed that Indian populations are closely related to one another, regardless of phenotypic characteristics, and do not show particular affinities to Africans. We conclude that the phenotypic similarities of some Indian groups to Africans do not reflect a close relationship between these groups, but are better explained by convergence."<ref>{{cite journal |doi=10.1046/j.1529-8817.2003.00083.x}}</ref>


A 2011 study published in the [[American Journal of Human Genetics]] <ref>[http://www.cell.com/AJHG/fulltext/S0002-9297(11)00488-5 Complete research text]</ref> indicates that Indian ancestral components are the result of a more complex demographic history than was previously thought. According to the researchers, South Asia harbours two major ancestral components, one of which is spread at comparable frequency and genetic diversity in populations of South and West Asia, the [[Middle East]], the [[Near East]] and the [[Caucasus]]; the other component is more restricted to South Asia. However, rather than ruling out the possibility of Indo-Aryan migration, these findings suggest that the genetic affinities of both Indian ancestral components are the result of multiple gene flows over the course of thousands of years, with Indo-Aryan expansion into the subcontinent but one of many complex demographic episodes. The study authors write:<ref name="Cell896">[http://www.cell.com/AJHG/fulltext/S0002-9297(11)00488-5%20 The American Journal of Human Genetics, Volume 89, Issue 6, 731-744, 9 December 2011]</ref>
A 2011 study published in the [[American Journal of Human Genetics]]<ref>{{cite journal |doi=10.1016/j.ajhg.2011.11.010}}</ref> indicates that Indian ancestral components are the result of a more complex demographic history than was previously thought. According to the researchers, South Asia harbours two major ancestral components, one of which is spread at comparable frequency and genetic diversity in populations of South and West Asia, the [[Middle East]], the [[Near East]] and the [[Caucasus]]; the other component is more restricted to South Asia. However, rather than ruling out the possibility of Indo-Aryan migration, these findings suggest that the genetic affinities of both Indian ancestral components are the result of multiple gene flows over the course of thousands of years, with Indo-Aryan expansion into the subcontinent but one of many complex demographic episodes. The study authors write:<ref name="Cell896">{{cite journal |doi=10.1016/j.ajhg.2011.11.010}}</ref>
{{Quote|Summing up, our results confirm both ancestry and temporal complexity shaping the still on-going process of genetic structuring of South Asian populations. This intricacy cannot be readily explained by the putative recent influx of Indo-Aryans alone but suggests multiple gene flows to the South Asian gene pool, both from the west and east, over a much longer time span.}}
{{Quote|Summing up, our results confirm both ancestry and temporal complexity shaping the still on-going process of genetic structuring of South Asian populations. This intricacy cannot be readily explained by the putative recent influx of Indo-Aryans alone but suggests multiple gene flows to the South Asian gene pool, both from the west and east, over a much longer time span.}}


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==Notes==
==Notes==
{{Refbegin|colwidth=30em}}
{{Refbegin|colwidth=30em}}
* {{Cite journal |doi=10.1007/s12041-008-0002-x}}
* {{Cite journal | author=Indian Genome Variation Consortium | title=Genetic landscape of the people of India: a canvas for disease gene exploration | journal=Journal of Genetics | volume=87| issue=1 | year=2008| pages=3–20 | doi=10.1007/s12041-008-0002-x | pmid=18560169 | ref=harv}} [http://www.ias.ac.in/jgenet/Vol87No1/temp/jgen08-00038.pdf]
* {{Cite journal |doi=10.1002/humu.22091}}
* {{Cite journal | author=Patowary et al | title=Systematic analysis and functional annotation of variations in the genome of an Indian individual. | journal=Human Mutation | volume=33| issue=7 | year=2012| pages=1133–40 | doi= 10.1002/humu.22091 | pmid=22461382 | ref=harv}} [http://onlinelibrary.wiley.com/doi/10.1002/humu.22091/pdf]
* {{Cite pmid|11381027}} [http://jorde-lab.genetics.utah.edu/elibrary/Bamshad_2001a.pdf PDF]
* {{Cite journal |pmid=11381027}}
* {{Cite journal |doi=10.1016/S0168-1702(01)00219-2 |ref=harv}}
* {{Cite journal | author=Bamshad, M., T. Kivisild, ''et al.'' | title=Genetic evidence on the origins of Indian caste populations | journal=Virus Research | volume=75 | issue=2 | year=2001 | pages=95–106 | pmid=11325464 | ref=harv | doi=10.1016/S0168-1702(01)00219-2}} [http://www.genomenewsnetwork.org/articles/05_01/Indo-European.shtml]
* {{Cite journal |doi=10.1101/gr.1413403 |ref=harv}}
* {{Cite journal | author=Basu ''et al.'' | title=Ethnic India: a genomic view, with special reference to peopling and structure | journal=Genome Research | year=2003 | volume=13 | pages=2277–2290 | doi=10.1101/gr.1413403 | pmid=14525929 | last2=Mukherjee | first2=N | last3=Roy | first3=S | last4=Sengupta | first4=S | last5=Banerjee | first5=S | last6=Chakraborty | first6=M | last7=Dey | first7=B | last8=Roy | first8=M | last9=Roy | first9=B | issue=10 | pmc=403703 | ref=harv}}
* {{Cite journal |doi=10.1126/science.1058948 |ref=harv}}
* {{Cite journal | author=Cann, R. | title=Genetic clues to dispersal in human populations: retracing the past from the present | journal=Science | year=2001 | volume=291 | pages=1742–1748 | doi=10.1126/science.1058948 | pmid=11249820 | issue=5509 | ref=harv|bibcode = 2001Sci...291.1742C }}
* {{Cite journal |doi=10.1016/j.cub.2004.01.024 |ref=harv}}
* {{Cite journal | author=Cordaux, R., R. Aunguer, G. Bentley, I. Nasidze, S.M. Sirajuddin, and M. Stoneking | title=Independent origins of Indian caste and tribal paternal lineages | journal=Current Biology | date=3 February 2004 | volume=14 | pages=231–235 | pmid=14761656 | issue=3 | doi=10.1016/j.cub.2004.01.024 | ref=harv}}
* {{cite book | ref = harv
* {{cite book | ref = harv
| last1 = Hemphill | first1 = Brian E.
| last1 = Hemphill | first1 = Brian E.
Line 325: Line 321:
* --- 1995. ''"Have Aryans been identified in the prehistoric skeletal record from South Asia?"'', in George Erdosy, ed.: The Indo-Aryans of Ancient South Asia, p.&nbsp;49-54.
* --- 1995. ''"Have Aryans been identified in the prehistoric skeletal record from South Asia?"'', in George Erdosy, ed.: The Indo-Aryans of Ancient South Asia, p.&nbsp;49-54.
* [[Toomas Kivisild|Kivisild, Toomas]] ''et al.'' 1999a. "Deep common ancestry of Indian and western-Eurasian mitochondrial DNA lineages" ''Curr Biol'' 9:1331–1334 [http://jorde-lab.genetics.utah.edu/elibrary/Kivisild_1999.pdf]
* [[Toomas Kivisild|Kivisild, Toomas]] ''et al.'' 1999a. "Deep common ancestry of Indian and western-Eurasian mitochondrial DNA lineages" ''Curr Biol'' 9:1331–1334 [http://jorde-lab.genetics.utah.edu/elibrary/Kivisild_1999.pdf]
* {{Cite journal | ref = harv
* {{Cite journal |doi=10.1007/978-1-4615-4263-6_11 |ref=harv}}
| last1 = Kivisild | first1 = Toomas
| last2 = Kaldma | first2 = Katrin
| last3 = Metspalu | first3 = Mait
| last4 = Parik | first4 = Jüri
| coauthors = Papiha, Surinder; Villems, Richard
| title = The Place of the Indian mtDNA Variants in the Global Network of Maternal Lineages and the Peopling of the Old World
| url = http://evolutsioon.ut.ee/publications/Kivisild1999b.pdf
| journal = Genomic Diversity | year = 1999b | pages = 135–52
}}
* {{Cite book | ref = harv
* {{Cite book | ref = harv
| year = 2000a
| year = 2000a
Line 353: Line 340:
| coauthors = Rootsi, Siiri; Metspalu, Mait; Metspalu, Ene; Parik, Juri; Kaldma, Katrin; Usanga, Esien; Mastana, Sarabjit; Papiha, Surinder S.; Villems, Richard
| coauthors = Rootsi, Siiri; Metspalu, Mait; Metspalu, Ene; Parik, Juri; Kaldma, Katrin; Usanga, Esien; Mastana, Sarabjit; Papiha, Surinder S.; Villems, Richard
| year = 2003a
| year = 2003a
| title = The Genetics of Language and Farming Spread in India" In: Bellwood P, Renfrew C (eds) Examining the farming/language dispersal hypothesis
| chapter= The Genetics of Language and Farming Spread in India |editor=Bellwood P, Renfrew C |title=Examining the farming/language dispersal hypothesis
| publisher = McDonald Institute for Archaeological Research, Cambridge, United Kingdom | pages = 215–222
| publisher = McDonald Institute for Archaeological Research, Cambridge, United Kingdom | pages = 215–222
| url = http://evolutsioon.ut.ee/publications/Kivisild2003a.pdf
| url = http://evolutsioon.ut.ee/publications/Kivisild2003a.pdf
}}
}}
* {{Cite journal | ref = harv
* {{Cite journal |doi=10.1086/346068 |ref=harv}}
* {{Cite journal |doi=10.1186/1471-2156-5-26}}
| last = Kivisild | first = Toomas
| coauthors = Rootsi, S.; Metspalu, M.; Mastana, S.; Kaldma, K.; Parik, J.; Metspalu, E.; Adojaan,M.; Tolk, H.-V.; Stepanov, V.; Gölge, M. ; Usanga, E. Papiha, S. S.; Cinnioglu, C.; King,R.; Cavalli-Sforza, L.; Underhill, P. A.; Villems, R.
| year = 2003b
| title = The Genetic Heritage of the Earliest Settlers Persists Both in Indian Tribal and Caste Populations
| journal = Am J Hum Genet | issue = 72 | pages = 313–332
| url = http://hpgl.stanford.edu/publications/AJHG_2003_v72_p313-332.pdf
}} [http://evolutsioon.ut.ee/publications/Kivisild2003b.pdf]
* {{Cite doi|10.1186/1471-2156-5-26}}<!--Metspalu, M. ''et al.'' 2004. ''Most of the extant mtDNA boundaries in South and Southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans'' [http://www.biomedcentral.com/1471-2156/5/26/abstract]-->[http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=516768]
* {{Cite book | ref = harv
* {{Cite book | ref = harv
| last = Oppenheimer | first = Stephen | author-link = Stephen Oppenheimer
| last = Oppenheimer | first = Stephen | author-link = Stephen Oppenheimer
Line 373: Line 353:
| isbn = 978-0-7867-1192-5
| isbn = 978-0-7867-1192-5
}} [http://dsc.discovery.com/convergence/realeve/realeve.html]{{Dead link|date=December 2010}}
}} [http://dsc.discovery.com/convergence/realeve/realeve.html]{{Dead link|date=December 2010}}
* {{cite doi|10.1073/pnas.0507714103}}<!--
* {{cite journal |doi=10.1073/pnas.0507714103}}
*{{cite journal |doi=10.1086/499411 |ref=harv}}
PNAS January 24, 2006 vol. 103 no. 4 843-848
*{{Cite journal |doi=10.1038/ejhg.2009.194 |ref=harv}}
Sahoo, S.; Kivisild, T. ''et al.'' (2006) A prehistory of Indian Y chromosomes: Evaluating demic diffusion scenarios. [http://www.pnas.org/cgi/content/abstract/0507714103v1] -->
*{{cite journal | ref = harv
| last1 = Sengupta | first1 = S
| journal = Am J Hum Genet. | year = 2006 | month = February | volume = 78 | issue = 2 | pages = 202–21
| title = Polarity and Temporality of High-Resolution Y-Chromosome Distributions in India Identify Both Indigenous and Exogenous Expansions and Reveal Minor Genetic Influence of Central Asian Pastoralists
| pmid = 16400607 | doi=10.1086/499411 | pmc=1380230 | last2 = Zhivotovsky | first2 = Lev A. | last3 = King | first3 = Roy | last4 = Mehdi | first4 = S.Q. | last5 = Edmonds | first5 = Christopher A. | last6 = Chow | first6 = Cheryl-Emiliane T. | last7 = Lin | first7 = Alice A. | last8 = Mitra | first8 = Mitashree | last9 = Sil | first9 = Samir K.
}} [http://www.journals.uchicago.edu/AJHG/journal/issues/v78n2/42812/brief/42812.abstract.html]{{Dead link|date=December 2010}}
*{{Cite journal | ref=harv |last1=Peter A
|last2=Myres |first2=NM
|last3=Rootsi |first3=S
|last4=Metspalu |first4=M
|coauthors = Zhivotovsky, LA; King, RJ; Lin, AA; Chow, CE; Semino, O
|title=Separating the post-Glacial coancestry of European and Asian Y chromosomes within haplogroup R1a
|journal=European Journal of Human Genetics |year=2009 |volume=18 |issue=4 |pages=479–84
|doi=10.1038/ejhg.2009.194
|pmid=19888303 |pmc=2987245 | first1=Peter A
}}
* Wells, S.; (2003) 'The Journey of Man: A Genetic Odyssey', Princeton University Press, January.
* Wells, S.; (2003) 'The Journey of Man: A Genetic Odyssey', Princeton University Press, January.
<!-- unattributed, sort by title -->
<!-- unattributed, sort by title -->
*{{cite journal |doi=10.1007/s00439-003-1031-4}}
* ''Excavating Y-chromosome haplotype strata in Anatolia'' [http://hpgl.stanford.edu/publications/HG_2004_v114_p127-148.pdf]
* ''Introduction to haplogroups and haplotypes'' [http://www.le.ac.uk/genetics/maj4/NewWebSurnames041008.html][http://www.le.ac.uk/genetics/maj4/SurnamesForWeb.pdf]
* ''Introduction to haplogroups and haplotypes'' [http://www.le.ac.uk/genetics/maj4/NewWebSurnames041008.html][http://www.le.ac.uk/genetics/maj4/SurnamesForWeb.pdf]
*{{cite journal |doi=10.1007/BF02717908}}
* ''High-resolution analysis of Y-chromosomal polymorphisms reveals signatures of population movements from Central Asia and West Asia into India'' [http://www.ias.ac.in/jgenet/Vol80No3/125.pdf]
*{{cite journal |doi=10.1038/nrg1124}}
* ''The human Y chromosome: an evolutionary marker comes of age'' [http://www.familytreedna.com/pdf/nrg1124_fs.pdf]
*{{cite journal |doi=10.1353/hub.2005.0003}}
* ''Minimal Sharing of Y-Chromosome STR Haplotypes Among Five Endogamous Population Groups from Western and Southwestern India'' [http://web.archive.org/web/20080407055911/http://www.geocities.com/vetinarilord/endog.pdf]
*{{cite journal |doi=10.1101/gr.9.8.711}}
* ''Negligible Male Gene Flow Across Ethnic Boundaries in India, Revealed by Analysis of Y-Chromosomal DNA Polymorphisms'' [http://www.genome.org/cgi/reprint/9/8/711.pdf]
*{{cite journal |doi=10.1086/386295}}
* ''Origin, Diffusion, and Differentiation of Y-Chromosome Haplogroups E and J: Inferences on the Neolithization of Europe and Later Migratory Events in the Mediterranean Area'' [http://hpgl.stanford.edu/publications/AJHG_2004_v74_p1023-1034.pdf]
*{{cite journal |doi=10.1086/339929}}
* ''Y-Chromosomal DNA Variation in Pakistan'' [http://www.journals.uchicago.edu/AJHG/journal/issues/v70n5/013572/013572.web.pdf]
*{{cite journal |doi=10.1086/422196}}
*''Phylogeography of Y-Chromosome Haplogroup I Reveals Distinct Domains of Prehistoric Gene Flow in Europe''[http://evolutsioon.ut.ee/publications/Rootsi2004.pdf]
*{{cite journal |doi=10.1007/s00439-003-1073-7}}
*''Contrasting patterns of Y chromosome variation in Ashkenazi Jewish and host non-Jewish European populations'' (Gives variances for R1a1)[http://www.familytreedna.com/pdf/Behar_contrasting.pdf]
{{Refend}}
{{Refend}}



Revision as of 00:39, 1 December 2013

The study of the genetics and archaeogenetics of the ethnic groups of South Asia aims at uncovering these groups' genetic history. The geographic position of India makes Indian populations important for the study of the early dispersal of all human populations on the Eurasian continent.

Studies based on mtDNA variation have reported genetic unity across various Indian sub–populations.[1][2][3][4] Conclusions of studies based on Y Chromosome variation and Autosomal DNA variation have been varied, although many researchers argue that most of the ancestral nodes of the phylogenetic tree of all the mtDNA types originated in the subcontinent. Recent genome studies appear to show that most Indians are descendants of Ancestral North Indians (related to Central Asians, Middle Easterners and Europeans) and Ancestral South Indians who are not closely related to external groups.[5]

It has been found that the ancestral node of the phylogenetic tree of all the mtDNA types typically found in Central Asia, the Middle East and Europe are also to be found in South Asia at relatively high frequencies. The inferred divergence of this common ancestral node is estimated to have occurred slightly less than 50,000 years ago.[6] In India the major maternal lineages, or mitochondrial DNA Haplogroups, are M, R and U, whose coalescence times have been approximated to 50,000 BP.[6]

The major paternal lineages represented by Y chromosomes are haplogroups R1a, R2, H, L and J2.[7] Many researchers have argued that Y-DNA Haplogroup R1a1 (M17) is of autochthonous Indian origin.[8][9] However, proposals for a Central Asian origin for R1a1 are also quite common.[10][11]

mtDNA

Hypothesized map of human migration based on mitochondrial DNA and possible dispersal routes of Eurasian mtDNA macro-haplogroups from South Asia.

The largest Indian mtDNA haplogroups are M, R and U [7]

Arguing for the longer term "rival Y-Chromosome model",[12] Stephen Oppenheimer believes that it is highly suggestive that India is the origin of the Eurasian mtDNA haplogroups which he calls the "Eurasian Eves". According to Oppenheimer it is highly probable that nearly all human maternal lineages in Central Asia, the Middle East and Europe descended from only four mtDNA lines that originated in South Asia 50,000-100,000 years ago.[13]

Macrohaplogroup M

The macrohaplogroup M which is considered as a cluster of the proto-Asian maternal lineages,[6] represents more than 60% of Indian MtDNA.[14]

The M macrohaplotype in India includes many subgroups that differ profoundly from other sublineages in East Asia especially Mongoloid populations.[6] The deep roots of M phylogeny clearly ascertain the relic of Indian lineages as compared to other M sub lineages (in East Asia and elsewhere) suggesting 'in-situ' origin of these sub-haplogroups in South Asia, most likely in India. These deep rooting lineages are not language specific and spread over all the language groups in India.[14]

Virtually all modern Central Asian MtDNA M lineages seem to belong to the Eastern Eurasian (Mongolian) rather than the Indian subtypes of haplogroup M, which indicates that no large-scale migration from the present Turkic-speaking populations of Central Asia occurred to India. The absence of haplogroup M in Europeans, compared to its equally high frequency among Indians, eastern Asians and in some Central Asian populations contrasts with the Western Eurasian leanings of South Asian paternal lineages.[6]

Most of the extant mtDNA boundaries in South and Southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans.[15]

Haplogroup Important Sub clades Populations
M2 M2a, M2b Throughout the continent except in Northwest
Peaking in Bangladesh, Andhra Pradesh, coastal Tamil Nadu and Sri Lanka
M3 M3a All the subcontinent except the Northeast
20% in Rajastan and Madhya Pradesh, being also very dense in Maharastra, Uttar Pradesh, Haryana, Gujarat, Karnataka
M4 M4a Peaks in Pakistan and Kashmir
M6 M6a,M6b Kashmir and near the coasts of the Bay of Bengal, Sri Lanka
M18 Throughout the subcontinent
Peaking at Rajastan and Andhra Pradesh
M25 Widespread in most of India (but rare outside it)
western Maharastra and Kerala, Punjab

Macrohaplogroup R

The macrohaplogroup R (a very large and old subdivision of macrohaplogroup N) is also widely represented and accounts for the other 40% of Indian MtDNA. A very old and most important subdivision of it is haplogroup U that, while also present in West Eurasia, has several subclades specific to South Asia.

Most important South Asian haplogroups within R:[15]

Haplogroup Populations
R2 Distributed widely across the sub continent
R5 widely distributed by most of India.
Peaks in coastal SW India
R6 widespread at low rates across India.
Peaks among Tamils and Kashmiris
W Found in Pakistan, Kashmir and Punjab.
It is rare further east and not to be found in India.

Haplogroup U

Haplogroup U is sub group of Macrohaplogroup R.[15] The distribution of haplogroup U is a mirror image of that for haplogroup M: the former has not been described so far among eastern Asians but is frequent in European populations as well as among Indians.[16] Indian U lineages differ substantially from those in Europe and their coalescence to a common ancestor also dates back to about 50,000 years.[17]

Haplogroup Populations
U2* (a parahaplogroup) is sparsely distributed specially in the northern half of the subcontinent. It is also found in SW Arabia.
U2a shows relatively high density in Pakistan and NW India but also in Karnataka, where it reaches its higher density.
U2b has highest concentration in Uttar Pradesh but is also found in many other places, specially in Kerala and Sri Lanka. It is also found in Oman.
U2c is specially important in Bangladesh and West Bengal.
U2l is maybe the most important numerically among U subclades in South Asia, reaching specially high concentrations (over 10%) in Uttar Pradesh, Sri Lanka, Sindh and parts of Karnataka. It also has some importance in Oman. mtDNA haplogroup U2i is dubbed "Western Eurasian" in Bamshad et al. study but "Eastern Eurasian (mostly India specific)" in Kivisild et al. study.
U7 this haplogroup has a significant presence in Gujrat, Punjab and Pakistan. The possible homeland of this haplogroup spans Indian Gujarat(highest frequency, 12%) and Iran because from there its frequency declines steeply both to the east and to the west.

Y chromosome

The diversion of Haplogroup F and its descendants.

The major Y chromosome DNA haplogroups in the subcontinent are F's descendant haplogroups R(mostly R1a and R2), L, H and J(mostly J2).[18]

The South Asian Y-chromosomal gene pool is characterized by five major lineages: R1a, R2, H, L and J2. Their geographical origins are listed as follows, according to the latest scholarship:

Major South Asian Y-chromosomal lineages: H J2 L R1a R2
Basu et al. (2003) no comment no comment no comment Central Asia no comment
Kivisild et al. (2003) India Western Asia India Southern and Western Asia South-Central Asia
Cordaux et al. (2004) India West or Central Asia Middle Eastern Central Asia South-Central Asia
Sengupta et al. (2006) India The Middle East and Central Asia South India North India North India
Thanseem et al. (2006) India The Levant The Middle East Southern and Central Asia Southern and Central Asia
Sahoo et al. (2006) South Asia The Near East South Asia South or West Asia South Asia
Mirabal et al. (2009) no comment no comment no comment Northwestern India or Central Asia no comment
Zhao et al. (2009) India The Middle East The Middle East Central Asia or West Eurasia Central Asia or West Eurasia
Sharma et al. (2009) no comment no comment no comment South Asia no comment
Thangaraj et al. (2010) South Asia The Near East The Near East South Asia South Asia

Haplogroup L

India

Haplogroup L shows time of neolithic expansion.[19] The clade is present in the Indian population at an overall frequency of ca.7-15%.[20] The presence of haplogroup L is quite rare among tribal groups (ca. 5,6-7%) (Cordaux et al. 2004, Sengupta et al. 2006, Thamseem et al. 2006)

Earlier studies (e.g. Wells et al. 2001) report a very high frequency (approaching 50%) of Haplogroup L in South India appear to have been due to extrapolation from data obtained from a sample of 84 yadavas and Kallars, a Tamil-speaking caste of Tamil Nadu, among whom 40 (approx. 48%) displayed the M20 mutation that defines Haplogroup L.

Pakistan

Haplogroup L3 (M357) is found frequently among Burusho (approx. 12%[21]) and Pashtuns (approx. 7%[21]), with a moderate distribution among the general Pakistani population (approx. 2%[21]). Its highest frequency can be found in south western Balochistan province along the Makran coast (28%) to Indus River delta.

L3a (PK3) is found in approximately 23% of Nuristani in northwest Pakistan.[21]

Haplogroup H

This haplogroup is found at a high frequency in South Asia. It is generally rare outside of the South Asia but is common among the Romani people, particularly the H-M82 subgroup. Haplogroup H is frequently found among populations of India, Sri Lanka, Nepal, Pakistan and Maldives.

It is a branch of Haplogroup F, and is believed to have arisen in India between 20,000 and 30,000 years ago. Its probable site of introduction is India since it is concentrated there. It seems to represent the main Y-haplogroup of the indigenous paleolithic inhabitants of India, because it is the most frequent Y-haplogroup of tribal and lower caste populations (25-35%). Its presence in upper castes is rare (ca. 10%).[22][23][24]

Haplogroup R2

In South Asia, the frequency of R2 lineage is around 10-15% in India and Sri Lanka and 7-8% in Pakistan.

India

Other than these, significantly high percentages are shown by the people of West Bengal at 23%, Hindus from New Delhi at 20% and Baniya from Bihar at 36%. It is also significantly high in many Brahmin groups including Punjabi Brahmins (25%), Bengali Brahmins (22%), Konkanastha Brahmins (20%), Chaturvedis (32%), Bhargavas (32%), Kashmiri Pandits (14%) and Lingayat Brahmins (30%).[citation needed]

Among tribal groups, Lodhas of West Bengal show it at 43% while Bhil of Gujarat at 18%. Chenchu and Pallan of South India at 20% and 14% respectively. Tharu of North India shows it at 17%.[citation needed]

North Indian Muslims have a frequency of 11%(Sunni) and 9%(Shia), while Dawoodi Bohra Muslim in the western state of Gujarat have a frequency of 16% and Mappla Muslims of South India have a frequency of 5%.[25] This lineage also forms 5% of Punjabi males.

Pakistan

The R2 haplogroup is found in 14% of the Burusho people.[26] Among the Hunza it is found at 18% while the Parsis show it at 20%.

Sri Lanka

39% of the Sinhalese of Sri Lanka are found to have R2.

Maldives

13% of the Maldivian people of Maldives are found to have R2.[27]

Nepal

In Nepal, R2 percentages range from 2% to 26% within different groups under various studies. Newars show a significantly high frequency of 26% while people of Kathmandu show it at 10%.

Haplogroup R1a1

In South Asia R1a1 has been observed often with high frequency in a number of demographic groups.[28][29] Its parent clade Haplogroup R1a is believed to have its origins in the Indus Valley or the Eurasian Steppe,[30] whereas its successor clade R1a1 has the highest frequency and time depth in South Asia, making it a possible locus of origin.[31][32][33] However, the uneven distribution of this haplogroup among South Asian castes and tribal populations makes a Central Eurasian origin of this lineage a strong possibility as well.[10][11]

India

In India, high percentage of this haplogroup is observed in West Bengal Brahmins (72%) [28] to the east, Konkanastha Brahmins (48%) [28] to the west, Khatris (67%)[34] in north and Iyengar Brahmins (31%)[28] of south. It has also been found in several South Indian Dravidian-speaking Tribals including the Chenchu (26%)[35] and Valmikis of Andhra Pradesh as well as the yadavas and Kallar of Tamil Nadu suggesting that M17 is widespread in these Southern Indians tribes.[35]

Besides these, studies show high percentages in geographically distant groups in India such as Manipuris (50%)[34] in the extreme North East and in Punjab (47%)[35] to the extreme North West.

Pakistan

In Pakistan it is found at 71% among the Mohanna of Sindh Province to the south and 46% among the Baltis of Gilgit-Baltistan to the north.[34]

Sri Lanka

In Sri Lanka, 13% of the Sinhalese people were found to be R1a1a (M17) positive.[35]

Maldives

In Maldives, 24% of the Maldivian people were found to be R1a1a (M17) positive.[27]

Nepal

People in Terai Region, Nepal show R1a1a at 69%.[36]

Haplogroup J2

Haplogroup J2 reflects presence from neolithic period in the subcontinent.[19] J2 is almost absent from tribals, but occurs among some Austro-Asiatic tribals (11%). The frequency of J2 is higher in South Indian castes (19%) than in North Indian castes (11%) or Pakistan (12%).[37] J2 appears at 20% among the Yadavas of South India while among the Lodhas of West Bengal it is 32%.[citation needed]. In Maldives, 22% of Maldivian population were found to be haplogroup J2 positive.[38]

Reconstructing Indian population history

The Indian Genome Variation Consortium (2005), divides the population of the subcontinent into four morphological types— Caucasoids, Mongoloids, Australoids, and Negritos (largely in the Andaman Islands) and four linguistic groups— Indo–European, Dravidian, Tibeto–Burman and Austro–Asiatic.[39] The molecular anthropology studies use three different type of markers: Mitochondrial DNA (mtDNA) variation which is maternally inherited and highly polymorphic, Y Chromosome variation which involves uniparental transmission along the male lines, and Autosomal DNA variation.[40]: 04 

mtDNA variation

Most of the studies based on mtDNA variation have reported genetic unity of Indian populations across language, caste and tribal groups.[1][2][3] It is likely that haplogroup M was brought to Asia from East Africa along the southern route by earliest migration wave 60,000 years ago.[1]

According to Kivisild et al. 1999, "Minor overlaps with lineages described in other Eurasian populations clearly demonstrate that recent immigrations have had very little impact on the innate structure of the maternal gene pool of Indians. Despite the variations found within India, these populations stem from a limited number of founder lineages. These lineages were most likely introduced to the Indian subcontinent during the Middle Palaeolithic, before the peopling of Europe and perhaps the Old World in general."[1] Basu et al. (2003) also emphasizes underlying unity of female lineages in India.[41]

Y Chromosome variation

Conclusions based on Y Chromosome variation have been more varied than those based on mtDNA variation. While Kivisild et al. (2003) proposes an ancient and shared genetic heritage of male lineages in India,[42] Bamshad et al. (2001) suggests an affinity between Indian male lineages and west Eurasians proportionate to caste rank and places caste populations of southern Indian states closer to East Europeans.[43]

Basu et al. (2003) concludes that Austro–Asiatic tribal populations entered India first from the Northwest corridor and much later some of them through Northeastern corridor.[41] Whereas, Kumar et al. (2007) analyzed 25 Indian Austro-Asiatic tribes and found strong paternal genetic link among the sub-linguistic groups of the Indian Austro-Asiatic populations.[44] Mukherjee et al. (2001) places North Indians between west Asian and Central Asian populations,[45] whereas Cordaux et al. (2004) argues that the Indian caste populations are closer to Central Asian populations.[46] Sahoo et al. (2006) and Sengupata et al. (2006) suggest that Indian caste populations have not been subject to any recent admixtures.[9][47] Sanghamitra Sahoo concludes his study with:[9]

It is not necessary, based on the current evidence, to look beyond South Asia for the origins of the paternal heritage of the majority of Indians at the time of the onset of settled agriculture. The perennial concept of people, language, and agriculture arriving to India together through the northwest corridor does not hold up to close scrutiny. Recent claims for a linkage of haplogroups J2, L, R1a, and R2 with a contemporaneous origin for the majority of the Indian castes’ paternal lineages from outside the subcontinent are rejected, although our findings do support a local origin of haplogroups F* and H. Of the others, only J2 indicates an unambiguous recent external contribution, from West Asia rather than Central Asia. The current distributions of haplogroup frequencies are, with the exception of the lineages, predominantly driven by geographical, rather than cultural determinants. Ironically, it is in the northeast of India, among the TB groups that there is clear-cut evidence for large-scale demic diffusion traceable by genes, culture, and language, but apparently not by agriculture.

Autosomal DNA variation

Results of studies based upon autosomal DNA variation have also been varied. In a major study (2009) using over 500,000 biallelic autosomal markers, Reich hypothesized that the modern Indian population was the result of admixture between two genetically divergent ancestral populations dating from the post-Holocene era. These two "reconstructed" ancient populations he termed "Ancestral South Indians" (ASI) and "Ancestral North Indians" (ANI). According to Reich: "ANI ancestry is significantly higher in Indo-European than Dravidian speakers, suggesting that the ancestral ASI may have spoken a Dravidian language before mixing with the ANI."[48]

Further building on Reich et al.'s characterization of the South Asian population as historically based on admixture of ANI (Ancestral North Indian) and ASI (Ancestral South Indian) populations, a 2011 session paper by Moorjani et al. states that a "major ANI-ASI mixture occurred in the ancestors of both northern and southern Indians 1,200-3,500 years ago, overlapping the time when Indo-European languages first began to be spoken in the subcontinent."[49]

Basu et al. (2003) suggests concludes that "Dravidian tribals were possibly widespread throughout India before the arrival of the Indo-European-speaking nomads" and that "formation of populations by fission that resulted in founder and drift effects have left their imprints on the genetic structures of contemporary populations".[41] The geneticist PP Majumder (2010) has recently argued that the findings of Reich et al. (2009) are in remarkable concordance with previous research using mtDNA and Y-DNA:[50]

Central Asian populations are supposed to have been major contributors to the Indian gene pool, particularly to the northern Indian gene pool, and the migrants had supposedly moved into India through what is now Afghanistan and Pakistan. Using mitochondrial DNA variation data collated from various studies, we have shown that populations of Central Asia and Pakistan show the lowest coefficient of genetic differentiation with the north Indian populations, a higher differentiation with the south Indian populations, and the highest with the northeast Indian populations. Northern Indian populations are genetically closer to Central Asians than populations of other geographical regions of India... . Consistent with the above findings, a recent study using over 500,000 biallelic autosomal markers has found a north to south gradient of genetic proximity of Indian populations to western Eurasians. This feature is likely related to the proportions of ancestry derived from the western Eurasian gene pool, which, as this study has shown, is greater in populations inhabiting northern India than those inhabiting southern India.

Genetic distance between caste groups and tribes

However, studies by Watkins et al. (2005) and Kivisild et al. (2003) based on autosomal markers conclude that Indian caste and tribal populations have a common ancestry.[42][51] Reddy et al. (2005) found fairly uniform allele frequency distributions across caste groups of southern Andhra Pradesh, but significantly larger genetic distance between caste groups and tribes indicating genetic isolation of the tribes and castes.[52]

Viswanathan et al. (2004) in a study on genetic structure and affinities among tribal populations of southern India concludes, "Genetic differentiation was high and genetic distances were not significantly correlated with geographic distances. Genetic drift therefore probably played a significant role in shaping the patterns of genetic variation observed in southern Indian tribal populations. Otherwise, analyses of population relationships showed that Indian populations are closely related to one another, regardless of phenotypic characteristics, and do not show particular affinities to Africans. We conclude that the phenotypic similarities of some Indian groups to Africans do not reflect a close relationship between these groups, but are better explained by convergence."[53]

A 2011 study published in the American Journal of Human Genetics[54] indicates that Indian ancestral components are the result of a more complex demographic history than was previously thought. According to the researchers, South Asia harbours two major ancestral components, one of which is spread at comparable frequency and genetic diversity in populations of South and West Asia, the Middle East, the Near East and the Caucasus; the other component is more restricted to South Asia. However, rather than ruling out the possibility of Indo-Aryan migration, these findings suggest that the genetic affinities of both Indian ancestral components are the result of multiple gene flows over the course of thousands of years, with Indo-Aryan expansion into the subcontinent but one of many complex demographic episodes. The study authors write:[55]

Summing up, our results confirm both ancestry and temporal complexity shaping the still on-going process of genetic structuring of South Asian populations. This intricacy cannot be readily explained by the putative recent influx of Indo-Aryans alone but suggests multiple gene flows to the South Asian gene pool, both from the west and east, over a much longer time span.

See also

References

  1. ^ a b c d . doi:10.1007/978-1-4615-4263-6_11. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  2. ^ a b . doi:10.1046/j.1529-8817.2004.00108.x. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  3. ^ a b Singh, Ashok Kumar (2007). Science & Technology For Upsc. Tata McGraw-Hill Education. p. 595. ISBN 978-0-07-065548-5.
  4. ^ Trends in Molecular Anthropological Studies in India, Vikal Tripathy, A. Nirmala and B. Mohan Reddy, 2008
  5. ^ . doi:10.1016/j.ajhg.2013.07.006. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  6. ^ a b c d e Toomas Kivisild, Surinder S. Papiha, Siiri Rootsi, Jüri Parik, Katrin Kaldma, Maere Reidla, Sirle Laos, Mait Metspalu, Gerli Pielberg, Maa rja Adojaan, Ene Metspalu, Sarabjit S. Mastana, Yiming Wang, Mukaddes Golge, Halil Demirtas, Eckart Schnakenberg, Gian Franco de Stefano, Tarekegn Geberhiwot, Mireille Claustres & Richard Villems, An Indian Ancestry: a Key for Understanding Human Diversity in Europe and Beyond, 2000, McDonald Institute Monographs [1]
  7. ^ a b Y Haplogroups of the World, 2005, McDonald
  8. ^ . doi:10.1086/499411. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  9. ^ a b c . doi:10.1073/pnas.0507714103. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  10. ^ a b . doi:10.1186/1471-2156-7-42. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)CS1 maint: unflagged free DOI (link)
  11. ^ a b . doi:10.1080/03014460802558522. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  12. ^ . doi:10.1086/499411. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  13. ^ Stephen Oppenheimer, The Real Eve: Modern Man's Journey Out of Africa,2004[page needed]
  14. ^ a b . doi:10.1186/1471-2164-7-15. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)CS1 maint: unflagged free DOI (link)
  15. ^ a b c . doi:10.1186/1471-2156-5-26. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)CS1 maint: unflagged free DOI (link)
  16. ^ (Kivisild et al. 1999a)
  17. ^ (Kivisild et al. 1999b)
  18. ^ Y Haplogroups of the World
  19. ^ a b . doi:10.1371/journal.pone.0015283. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)CS1 maint: unflagged free DOI (link)
  20. ^ (Basu et al. 2003, Cordaux et al. 2004, Sengupta et al. 2006, Thamseem et al. 2006)
  21. ^ a b c d . doi:10.1038/sj.ejhg.5201726. {{cite journal}}: Cite journal requires |journal= (help); Invalid |ref=harv (help); Missing or empty |title= (help)
  22. ^ . doi:10.1016/j.cub.2004.01.024. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  23. ^ . doi:10.1086/499411. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  24. ^ . doi:10.1186/1471-2156-7-42. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)CS1 maint: unflagged free DOI (link)
  25. ^ . doi:10.1038/ejhg.2009.168. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  26. ^ . doi:10.1038/sj.ejhg.5201726. {{cite journal}}: Cite journal requires |journal= (help); Invalid |ref=harv (help); Missing or empty |title= (help)
  27. ^ a b Ancestry of Maldives People in Light of Population Genetics
  28. ^ a b c d Sengupta et al. (2005)
  29. ^ Sahoo et al. (2006)
  30. ^ ISOGG 2012 Y-DNA Haplogroup R
  31. ^ . doi:10.1038/ejhg.2009.194. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  32. ^ . doi:10.1038/jhg.2008.2. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  33. ^ . doi:10.1038/ejhg.2009.6. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  34. ^ a b c Underhill et al. (2009)
  35. ^ a b c d Kivisild et al. (2003)
  36. ^ Fornarino et al. (2009)
  37. ^ (Sengupta 2006)
  38. ^ Ancestry of Maldives People in Light of Population Genetics: Maldivian Ancestry in light of Genetics
  39. ^ The Place of the Indian mtDNA Variants in the Global Network of Maternal Lineages and the Peopling of the Old World
  40. ^ Trends in Molecular Anthropological Studies in India
  41. ^ a b c . doi:10.1101/gr.1413403. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  42. ^ a b Kivisild 2003 The Genetics of Language and Farming Spread in India.In.Examining the farming-language dispersal hypothesis
  43. ^ Genetic Evidence on the Origins of Indian Caste Populations
  44. ^ . doi:10.1186/1471-2148-7-47. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)CS1 maint: unflagged free DOI (link)
  45. ^ . doi:10.1007/BF02717908. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  46. ^ . doi:10.1016/j.cub.2004.01.024. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  47. ^ . doi:10.1086/499411. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  48. ^ . doi:10.1038/nature08365. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  49. ^ Abstract/Presentation
  50. ^ . doi:10.1016/j.cub.2009.11.053. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  51. ^ . doi:10.1046/j.1529-8817.2005.00200.x. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  52. ^ . doi:10.1353/hub.2006.0018. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  53. ^ . doi:10.1046/j.1529-8817.2003.00083.x. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  54. ^ . doi:10.1016/j.ajhg.2011.11.010. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)
  55. ^ . doi:10.1016/j.ajhg.2011.11.010. {{cite journal}}: Cite journal requires |journal= (help); Missing or empty |title= (help)

Notes