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This '''list of sequenced algae genomes''' contains algae species known to have publicly available complete genome sequences that have been assembled, annotated and published. Unassembled genomes are not included, nor are organelle only sequences. For plant genomes see the [[list of sequenced plant genomes]]. For all kingdoms, see the [[list of sequenced genomes]].
This '''list of sequenced algae genomes''' contains algae species known to have publicly available complete genome sequences that have been assembled, annotated and published. Unassembled genomes are not included, nor are organelle only sequences. For plant genomes see the [[list of sequenced plant genomes]]. For all kingdoms, see the [[list of sequenced genomes]].

== [[Alveolata]] ==
{| class="wikitable sortable mw-collapsible"
|+
!Organism

<small>strain</small>
!Type
!Relevance
!Genome Size
!Number
of genes

predicted
!Organization
!Year of
Completion
!Assembly
Status
!Links
|-
|''Breviolum minutum'' (''[[Symbiodinium minutum]]''; clade B1)
|Dinoflagellate
|Coral symbiont
|1.5 Gb
|47,014
|[[Okinawa Institute of Science and Technology]]
|2013<ref>{{cite journal | vauthors = Shoguchi E, Shinzato C, Kawashima T, Gyoja F, Mungpakdee S, Koyanagi R, Takeuchi T, Hisata K, Tanaka M, Fujiwara M, Hamada M, Seidi A, Fujie M, Usami T, Goto H, Yamasaki S, Arakaki N, Suzuki Y, Sugano S, Toyoda A, Kuroki Y, Fujiyama A, Medina M, Coffroth MA, Bhattacharya D, Satoh N | display-authors = 6 | title = Draft assembly of the ''Symbiodinium minutum'' nuclear genome reveals dinoflagellate gene structure | journal = Current Biology | volume = 25 | issue = 15 | pages = 1399-1408 | date = 2013 | pmid = 23850284 | doi = 10.1016/j.cub.2013.05.062 }}</ref>
|Draft
|OIST Marine Genomics<ref name=":4">{{Cite web|url=http://marinegenomics.oist.jp/symb/viewer/info?project_id=21|title=S. minutum genome project|website=marinegenomics.oist.jp|access-date=2018-08-22}}</ref>
|-
|-
|''Cladocopium goreaui'' (''[[Symbiodinium goreaui]]''; clade C1)
|Dinoflagellate
|Coral symbiont
|1.19 Gb
|35,913
|[[Reef Future Genomics (ReFuGe) 2020]] / [[University of Queensland]]
|2018<ref name=":5">{{cite journal | vauthors = Liu H, Stephens TG, González-Pech RA, Beltran VH, Lapeyre B, Bongaerts P, Cooke I, Aranda M, Bourne DG, Forêt S, Miller DJ, van Oppen MJ, Voolstra CR, Ragan MA, Chan CX | display-authors = 6 | title = ''Symbiodinium'' genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis | journal = Communications Biology | volume = 1 | pages = 95 | date = 2018 | doi = 10.1038/s42003-018-0098-3 }}</ref>
|Draft
|ReFuGe 2020<ref name=":6">{{Cite web|url=http://refuge2020.reefgenomics.org|title=ReFuGe 2020 Data Site|website=refuge2020.reefgenomics.org|access-date=2018-08-22}}</ref>
|-
|-
|''Fugacium kawagutii'' CS156=CCMP2468 (''[[Symbiodinium kawagutii]]''; clade F1)
|Dinoflagellate
|Coral symbiont?
|1.07 Gb
|26,609
|[[Reef Future Genomics (ReFuGe) 2020]] / [[University of Queensland]]
|2018<ref name=":5">{{cite journal | vauthors = Liu H, Stephens TG, González-Pech RA, Beltran VH, Lapeyre B, Bongaerts P, Cooke I, Aranda M, Bourne DG, Forêt S, Miller DJ, van Oppen MJ, Voolstra CR, Ragan MA, Chan CX | display-authors = 6 | title = ''Symbiodinium'' genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis | journal = Communications Biology | volume = 1 | pages = 95 | date = 2018 | doi = 10.1038/s42003-018-0098-3 }}</ref>
|Draft
|ReFuGe 2020<ref name=":6">{{Cite web|url=http://refuge2020.reefgenomics.org|title=ReFuGe 2020 Data Site|website=refuge2020.reefgenomics.org|access-date=2018-08-22}}</ref>
|-
|-
|''Fugacium kawagutii'' CCMP2468 (''[[Symbiodinium kawagutii]]''; clade F1)
|Dinoflagellate
|Coral symbiont?
|1.18 Gb
|36,850
|[[University of Connecticut]] / [[Xiamen University]]
|2015<ref>{{cite journal | vauthors = Lin S, Cheng S, Song B, Zhong X, Lin X, Li W, Li L, Zhang Y, Zhang H, Ji Z, Cai M, Zhuang Y, Shi X, Lin L, Wang L, Wang Z, Liu X, Yu S, Zeng P, Hao H, Zou Q, Chen C, Li Y, Wang Y, Xu C, Meng S, Xu X, Wang J, Yang H, Campbell DA, Sturm NR, Dagenais-Bellefeuille S, Morse D | display-authors = 6 | title = The ''Symbiodinium kawagutii'' genome illuminates dinoflagellate gene expression and coral symbiosis | journal = Science | volume = 350 | issue = 6261 | pages = 691-4 | date = 2015 | pmid = 26542574 | doi = 10.1126/science.aad0408 }}</ref>
|Draft
|''Symbiodinium kawagutii'' genome project<ref>{{Cite web|url=http://web.malab.cn/symka_new|title=''S. kawagutii'' data site|website=web.malab.cn/symka_new|access-date=2018-08-22}}</ref>
|-
|-
|''Symbiodinium microadriaticum'' (clade A)
|Dinoflagellate
|Coral symbiont
|1.1 Gb
|49,109
|[[King Abdullah University of Science and Technology]]
|2016<ref>{{cite journal | vauthors = Aranda M, Li Y, Liew YJ, Baumgarten S, Simakov O, Wilson MC, Piel J, Ashoor H, Bougouffa S, Bajic VB, Ryu T, Ravasi T, Bayer T, Micklem G, Kim H, Bhak J, LaJeunesse TC, Voolstra CR | display-authors = 6 | title = Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle | journal = Scientific Reports | volume = 6 | pages = 39734 | date = 2016 | pmid = 28004835 | doi = 10.1038/srep39734 }}</ref>
|Draft
|Reef Genomics<ref name=":7">{{Cite web|url=http://www.reefgenomics.org/|title=Reef Genomics Data Site|website=smic.reefgenomics.org|access-date=2018-08-22}}</ref>
|}



== [[Cryptomonad]] ==
== [[Cryptomonad]] ==

Revision as of 05:48, 22 August 2018

This list of sequenced algae genomes contains algae species known to have publicly available complete genome sequences that have been assembled, annotated and published. Unassembled genomes are not included, nor are organelle only sequences. For plant genomes see the list of sequenced plant genomes. For all kingdoms, see the list of sequenced genomes.

Alveolata

Organism

strain

Type Relevance Genome Size Number

of genes

predicted

Organization Year of

Completion

Assembly

Status

Links
Breviolum minutum (Symbiodinium minutum; clade B1) Dinoflagellate Coral symbiont 1.5 Gb 47,014 Okinawa Institute of Science and Technology 2013[1] Draft OIST Marine Genomics[2]
Cladocopium goreaui (Symbiodinium goreaui; clade C1) Dinoflagellate Coral symbiont 1.19 Gb 35,913 Reef Future Genomics (ReFuGe) 2020 / University of Queensland 2018[3] Draft ReFuGe 2020[4]
Fugacium kawagutii CS156=CCMP2468 (Symbiodinium kawagutii; clade F1) Dinoflagellate Coral symbiont? 1.07 Gb 26,609 Reef Future Genomics (ReFuGe) 2020 / University of Queensland 2018[3] Draft ReFuGe 2020[4]
Fugacium kawagutii CCMP2468 (Symbiodinium kawagutii; clade F1) Dinoflagellate Coral symbiont? 1.18 Gb 36,850 University of Connecticut / Xiamen University 2015[5] Draft Symbiodinium kawagutii genome project[6]
Symbiodinium microadriaticum (clade A) Dinoflagellate Coral symbiont 1.1 Gb 49,109 King Abdullah University of Science and Technology 2016[7] Draft Reef Genomics[8]


Cryptomonad

Organism

strain

Type Relevance Genome Size Number

of genes

predicted

Organization Year of

Completion

Assembly

Status

Links
Cryptophyceae sp. CCMP2293 Nanoflagellate Nucleomorph, Psychrophile 534.5 Mb 33,051 Joint Genome Institute 2016[9] JGI Genome Portal[10]
Guillardia theta Eukaryote Endosymbiosis 87.2 Mb 24, 840 Dalhousie University 2012[11] The Greenhouse[12]

Glaucophyte

Organism

strain

Type Relevance Genome

Size

Number

of genes

predicted

Organization Year of

Completion

Assembly

Status

Links
Cyanophora

paradoxa

Model

Organism

70.2 Mb 3,900 Rutgers University 2012[13] The Greenhouse[12]

Cyanophora Genome Project[14]

Green Algae

Organism

strain

Type Relevance Genome

Size

Number

of Genes

Predicted

Organization Year of

Completion

Assembly

Status

Links
Asterochloris sp. Cgr/DA1pho Photobiont 55.8 Mb 10,025 Duke University 2011[15] JGI Genome Portal[10]
Auxenochlorella protothecoides Biofuels 22.9 Mb 7,039 Tsinghua University 2014[16] The Greenhouse[12]
Bathycoccus prasinos Comparative analysis 15.1 Mb 7,900 Joint Genome Institute 2012[17] JGI Genome Portal[10]
Chlamydomonas reinhardtii CC-503

cw92 mt+

Model Organism 111.1 Mb 17,741 Joint Genome Institute 2017[18] Phytozome[19]

The Greenhouse[12]

Chlorella sorokiniana str. 1228 Biofuels 61.4 Mb Los Alamos National Lab 2018[20] The Greenhouse[12]
Chlorella sorokiniana UTEX 1230 Biofuels 58.5 Mb Los Alamos National Lab 2018[21] The Greenhouse[12]
Chlorella sorokiniana DOE1412 Biofuels 57.8 Mb Los Alamos National Lab 2018[22] The Greenhouse[12]
Chlorella variabilis NC64A Biofuels 46.2 Mb 9,791 2010[23] The Greenhouse[12]
Chlorella vulgaris Biofuels 37.3 Mb National Renewable

Energy Laboratory

2015[24] The Greenhouse[12]
Coccomyxa Subellipsoidea

sp. C-169

Biofuels 48.8 Mb 9839 Joint Genome Institute 2012[25] Phytozome[19]

The Greenhouse[12]

Dunaliella salina

CCAP19/18

Halophile

Biofuels

Beta-carotene and glycerol production

343.7 Mb 16,697 Joint Genome Institute 2017[26] Phytozome[19]
Micromonas commoda NOUM17 (RCC288) Marine phytoplankton 21.0 Mb 10,262 Monterey Bay Aquarium Research Institute 2013[27][28] JGI Genome Portal[10]
Micromonas

pusilla CCMP-1545

Marine

phytoplankton

21.9 Mb 10,575 Micromonas

Genome

Consortium

2009[29] Phytozome[19]

The Greenhouse[12]

Micromonas

pusilla

RCC299/NOUM17

Marine

phytoplankton

20.9 Mb 10,056 Joint Genome

Institute

2009[29] Phytozome[19]

The

Greenhouse[12]

Monoraphidium

neglectum

Biofuels 69.7 Mb 16,755 Bielefeld

University

2013[30] The

Greenhouse[12]

Ostreococcus

lucimarinus

CCE9901

Small genome 13.2 Mb 7,603 Joint Genome Institute 2007[31] Phytozome[19]
Ostreococcus

tauri OTH95

Small genome 12.9 Mb 7,699 CNRS 2014[32] The Greenhouse[12]
Ostreococcus sp.

RCC809

Small genome 13.3 Mb 7,492 Joint Genome

Institute

2009[33] JGI[34]
Picochlorum

soloecismus

DOE101

Biofuels 15.2 Mb 7,844 Los Alamos

National Lab

2017[35] The Greenhouse[12]
Picochlorum

SENEW3

Biofuels 13.5 Mb 7,367 Rutgers University 2014[36] The Greenhouse[12]
Scenedesmus

obliquus DOE0152Z

Biofuels 210.3 Mb Brooklyn College 2017[37] The Greenhouse[12]
Symbiochloris reticulata (Metagenome) Photobiont 58.6 Mb 12,720 Joint Genome Institute 2018[38] JGI Genome Portal[10]
Tetraselmis sp. Biofuels 228 Mb Los Alamos

National Lab

2018[12] The Greenhouse[12]
Volvox Carteri Multicellular alga,

model organism

131.2 Mb 14,247 Joint Genome

Institute

2010[39] Phytozome[19]

The

Greenhouse[12]

Haptophyte

Organism

strain

Type Relevance Genome

Size

Number

of genes

predicted

Organization Year of

Completion

Assembly

Status

Links
Chrysochromulina

parva

Biofuels 65.8 Mb Los Alamos National Laboratory 2018[40] The Greenhouse[12]
Chrysochromulina tobinii CCMP291 Model organism, Biofuels 59.1 Mb 16,765 University of Washington 2015[41] The Greenhouse[12]
Emiliania huxleyi Coccolithophore Alkenone production, Algal blooms 167.7 Mb 38,554 Joint Genome Institute 2013[42] The Greenhouse[12]
Pavlovales sp. CCMP2436 Psychrophile 165.4 Mb 26,034 Joint Genome Institute 2016[43] JGI Genome Portal[10]

Heterokonts/Stramenopiles

Organism

strain

Type Relevance Genome

Size

Number

of genes

predicted

Organization Year of

Completion

Assembly

Status

Links
Aureococcus

anophagefferens

Harmful Algal

Bloom

50.1 Mb 11,522 Joint Genome Institute 2011[44] The Greenhouse[12]
Ectocarpus siliculosus Brown algae Model organism 198.5 Mb 16,269 Genoscope 2012[45] The Greenhouse[12]
Fragilariopsis cylindrus CCMP1102 Psychrophile 61.1 Mb 21,066 University of East Anglia, Joint Genome Institute 2017[46] JGI Genome Portal[10]
Nannochloropsis

gaditana

Biofuels 28.5 Mb 10,486 University of Padua 2014[47] The Greenhouse[12]
Nannochloropsis

oceanica

Biofuels 31.5 Mb Chinese Academy of Sciences, Qingdao Institute of Bioenergy and Bioprocess Technology 2016[48] The Greenhouse[12]
Nannochloropsis Salina CCMP1766 Biofuels 24.4 Mb Chinese Academy of Sciences, Qingdao Institute of Bioenergy and Bioprocess Technology 2016[49] The Greenhouse[12]
Ochromonadaceae sp. CCMP2298 Psychrophile 61.1 Mb 20,195 Joint Genome Institute 2016[50] JGI Genome Portal[10]
Pelagophyceae sp. CCMP2097 Psychrophile 85.2 Mb 19,402 Joint Genome Institute 2016[51] JGI Genome Portal[10]
Phaeodactylum tricornutum Model organism 27.5 Mb 10,408 Diatom Consortium 2008[52] The Greenhouse[12]
Pseudo-nitzschia multiseries CLN-47 218.7 Mb 19,703 Joint Genome Institute 2011[53] JGI Genome Portal[10]
Saccharina japonica Brown algae Commercial crop 543.4 Mb Chinese Academy of Sciences, Beijing Institutes of Life Science 2015[54] The Greenhouse[12]
Thalassiosira oceanica CCMP 1005 Model organism 92.2 Mb 34,642 The Future Ocean 2012[55] The Greenhouse[12]
Thalassiosira pseudonana model organism 32.4 Mb 11,673 Diatom Consortium 2009[56] The Greenhouse[12]

Red Algae (Rhodophyte)

Organism

strain

Type Relevance Genome

Size

Number

of genes

predicted

Organization Year of

Completion

Assembly

Status

Links
Chondrus crispus Carrageenan production, model organism 105 Mb 9,606 Genoscope 2013 The Greenhouse[12]
Cyanidioschyzon

merolae 10D

Model

organism

16.5 Mb 4,775 National Institute

of Genetics, Japan

2007[57] The Greenhouse[12]
Galdieria sulphuraria Extremophile 12.1 Mb The University of York 2016[58] The Greenhouse[12]
Gracilariopsis chorda Mesophile 92.1 Mb 10,806 Sungkyunkwan University 2018[59]
Porphyridium purpureum Mesophile 19.7 Mb 8,355 Rutgers University 2013[60]
Porphyra umbilicalis Mariculture 87.6 Mb 13,360 University of Maine 2017[61] Phytozome[19]
Pyropia yezoensis Mariculture 43.5 Mb 10,327 National Research Institute of Fisheries Science 2013[62]

Rhizaria

Organism

strain

Type Relevance Genome

Size

Number

of genes

predicted

Organization Year of

Completion

Assembly

Status

Links
Bigelowiella natans Model organism 94. Mb 21,708 Dalhousie University 2012[11] The Greenhouse[12]

References

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