Jump to content

Talk:Evolution

Page contents not supported in other languages.
From Wikipedia, the free encyclopedia

This is an old revision of this page, as edited by AGNT (talk | contribs) at 18:02, 13 November 2019 (→‎Please review). The present address (URL) is a permanent link to this revision, which may differ significantly from the current revision.

Template:Vital article

Featured articleEvolution is a featured article; it (or a previous version of it) has been identified as one of the best articles produced by the Wikipedia community. Even so, if you can update or improve it, please do so.
Main Page trophyThis article appeared on Wikipedia's Main Page as Today's featured article on March 18, 2005.
Did You Know Article milestones
DateProcessResult
February 4, 2005Featured article candidatePromoted
August 17, 2005Featured article reviewKept
February 7, 2007Featured article reviewDemoted
May 31, 2007Peer reviewReviewed
June 10, 2007Featured article candidatePromoted
Did You Know A fact from this article appeared on Wikipedia's Main Page in the "Did you know?" column on October 12, 2007.
Current status: Featured article


The destination of reference 14

Ohtomo, Yoko; Kakegawa, Takeshi; Ishida, Akizumi; et al. (January 2014). "Evidence for biogenic graphite in early Archaean Isua metasedimentary rocks". Nature Geoscience. 7 (1): 25–28. Bibcode:2014NatGe...7...25O. doi:10.1038/ngeo2025. ISSN 1752-0894.

states at the top of the page that the current destination (http://adsabs.harvard.edu/abs/2014NatGe...7...25O) will be retired in October 2019, and links should be redirected to the new format. The new page is at https://ui.adsabs.harvard.edu/abs/2014NatGe...7...25O/abstract I am uncertain about the details of editing a complex reference like this, so request a knowledgeable editor do it. Gjh42 (talk) 16:34, 19 July 2019 (UTC)[reply]

After a quick look, the bibcode appears to be the one pointing to the old site, the DOI link still works. A related thread is here: it seems that the old site will keep being used by WP:CS1 citations until it's really necessary to change it, or until current issues with the new one are fixed. There seems to be nothing to do about the citation itself, when WP:CS1 is adapted to point bibcode links to the new site, all citations using WP:CS1 |bibcode= will automatically use the new site. I hope this helps, —PaleoNeonate02:00, 20 July 2019 (UTC)[reply]

Edit war over short description?

We've been having repeated reverts on the short description, mainly involving these two versions:

1. change in the heritable characteristics of biological populations over successive generations -- 90+ characters long.

2. Development of new biological species -- 38 characters long.

Version 1 accurately and precisely defines the subject. But that's not the purpose of the short description. If it were, we'd just use the whole first paragraph for any article. The reason the short description system was created is to clarify the subject subject when it's listed with several other related subjects, such as a search on a mobile device, that is, to as briefly as possible distinguish the subject, not define it. That's why the guideline for short descriptions states "no more than 40 characters". See Wikipedia_talk:Short_description#Should_a_short_description_define_or_distinguish? Version 1 is opaque, both by its length and technical verbiage, so completely fails as a helpful short description.

Version 2 is simplistic to the point of not being very accurate. But when this subject name is listed only by its title and this short description, it actually helps the user get to the article they want. If the want this article, they can then read the lede sentence and get the fully accurate (but complicated) definition.

Of course, the whole short description system is very new, and countless editors are creating short descriptions using their own criteria; the system may even soon evolve (no pun intended), but AFAIK this is where we are at the moment. --A D Monroe III(talk) 19:30, 4 August 2019 (UTC)[reply]

"opaque... completely fails" is hyperbolic, not a useful framing here. One problem I see with the shorter version is the "new species" bit. That is a small, somewhat fuzzy part of the process of evolution. One might call it a synecdoche (part standing for whole) but IMO it oversimplifies too much, and does not distinguish the topic from speciation. Just plain Bill (talk) 19:51, 4 August 2019 (UTC)[reply]
This is not an edit war, so please don't turn it into one. The fact that there have been several reverts tell us only that there is no consensus on this, and that there needs to be more constructive engagement on the discussion. WP is driven by consensus, not by character counts. Irrespective of the number of characters, the meaning must be accurate and the wording must be agreed. Plantsurfer 19:58, 4 August 2019 (UTC)[reply]

Interesting problem. I can see a case for both versions. One is indeed shorter and looks clear, but I tend to lean in the longer direction for the simple reason that modern evolutionary theory destroyed the concept of a species, at least as a clear concept which you could build upon like a rock. Evolution is now a more clear concept than a species. Of course many people don't realize this, and find it an odd sort of thing to say. I hope this observation does not make things worse!--Andrew Lancaster (talk) 21:18, 4 August 2019 (UTC)[reply]

At this point I will not offer a short description, but I flatly oppose #2. That is speciation. #1 is the opening sentence of this article and it has been crafted and endured the critical eye of many editors. #1 should suffice as a short description. Rowan Forest (talk) 22:35, 4 August 2019 (UTC)[reply]

We might consider replacing "characteristics" with "traits", and, perhaps, drop "successive" as fairly obvious (in the short description, not in the lead, of course). I oppose #2. It is not a good definition of evolution at all. Retimuko (talk) 00:01, 5 August 2019 (UTC)[reply]

FWIW - yes - agreed - #1 seems accurate, but too long; #2 is brief, but could be better; perhaps a new #3 suggestion *might* be ok? => "study of inheritable generational changes" -- 41 characters long - OR - #4 => "process of inheritable generational changes" -- 43 characters long - in any case - Enjoy! :) Drbogdan (talk) 00:48, 5 August 2019 (UTC)[reply]

I think using #1 as the starting point is probably best. #2 is more of a definition of speciation. #3 could be even shorter by dropping 'study of' (otherwise closer to definition of evolutionary biology). T.Shafee(Evo&Evo)talk 00:53, 5 August 2019 (UTC)[reply]
How about "Descent with modifications?" It's accurate and short. My two cents. :) danielkueh (talk) 04:27, 5 August 2019 (UTC)[reply]
OK, #5: "descent with modification" was Darwin's expression in "Origin of Species".

I would vote for that if it is followed up with an explanation that it is about populations (rather than individuals) and the modifications are to inheritance (or genetics, genotype rather than phenotype). Another possibility would be a shorter version of #1, let's call it #1a: "generational change in genetics of populations". (45 characters, close enough.) It's ugly, but surely a better writer than I could do better. TomS TDotO (talk) 13:34, 5 August 2019 (UTC)[reply]

? "genetic change in populations over time". Plantsurfer 14:55, 5 August 2019 (UTC)[reply]
? "change in population genetics over time" is 39 characters. Just plain Bill (talk) 15:07, 5 August 2019 (UTC)[reply]

[ec] Point of information to put the "40 characters" business in context: The short description should be as brief as possible. A target of 40 characters has been suggested, but this can be exceeded when necessary.

change of heritable traits over generations is 43 characters.
change of heritable traits over generations of populations is 58 characters.

"Descent with modification" says enough in three words for those familiar with the subject. I like it, but for newcomers it could be cryptic, so a little extra clarifying verbiage might be appropriate. Just plain Bill (talk) 14:58, 5 August 2019 (UTC)[reply]

I favor Dr Bogdan's option #3: "Inheritable generational changes". Rowan Forest (talk) 15:09, 5 August 2019 (UTC)[reply]

No, frankly that's just word salad. It isn't generational changes that are inheritable, it is traits. Plantsurfer 15:36, 5 August 2019 (UTC)[reply]
Given this is for the layman, and ≤40 characters, can't be picky like that, and cant be overly scientific. How many people know what a phenotypic trait is? Rowan Forest (talk) 15:43, 5 August 2019 (UTC)[reply]
What do you mean, it is for the layman, @Rowan Forest:? We don't dumb down maths articles for the layperson so why would we for biology? Short description doesn't mean dumbed down, it merely means concise. ♫ RichardWeiss talk contribs 15:51, 5 August 2019 (UTC)[reply]
Because we are not writing and "article" of ≤40 characters. It is a descriptor for Wikipedia. Rowan Forest (talk) 15:58, 5 August 2019 (UTC)[reply]
Inheritable captures what phenotypic would be saying I think and perhaps does a bit more. I can see the problem with generational change, but it is difficult. What biology really looks at are inheritable differences or variants within populations. So the generational changes are indeed only patterns and tendencies and very much to do with how humans try to summarize what they see.--Andrew Lancaster (talk) 16:08, 5 August 2019 (UTC)[reply]
so "heritable change in populations over time" or "change of heritable traits in populations over time" would cover it without triggering issues about what a generation means. Plantsurfer 16:30, 5 August 2019 (UTC)[reply]
"change of heritable traits of populations over time" seems OK, but with links to Heritability and Population. On a related issue, I searched Wikis and couldn't find any reference to the famous "descent with modification", which seems a major lapse. I am going to try to repair that, in this article at an appropriate place in the discussion of Darwin, and under Darwin quotes in Wikiquote. TomS TDotO (talk) 20:38, 5 August 2019 (UTC)[reply]
That works nicely, but Links should not appear in a short description, at least for now. (With discussion ongoing, that may change.) Just plain Bill (talk) 21:08, 5 August 2019 (UTC)[reply]
I agree that #2 could be improved, but at least it includes something about species, which really needs to be in the short description. By far the most notable thing about evolution is the fact its flooded our world with all sorts amazingly different species, which pretty literally makes the world we live in. What could be more important than that? To state that, long the way, it causes things like making blue eyes a bit more prevalent amounts to mere side-effect in comparison. Yes, those kinds of tiny steps is how it eventually gets to new species, but the end result is stunning, while the individual steps in the process probably wouldn't be noticed. The fact that evolution leads to new species is by far the most important fact about it. (Even Darwin called it "the origin of species".) I can't see how leaving new species out of the short description can be justified.
Also, biology needs be in the short description, since people hear about all sorts of other evolutions, and they can't see our "About" template when the short description is presented to them.
So, can we come up with a short description that includes new species and biology? --A D Monroe III(talk) 22:56, 5 August 2019 (UTC)[reply]
I don't think that "species" should necessarily be mentioned especially in a short description. This is a very fuzzy concept, and not a key to understanding evolution. Yes, Darwin mentioned it in the title of his book, but we know better now. Retimuko (talk) 23:16, 5 August 2019 (UTC)[reply]

FWIW - a 45-character suggestion may be => "species adaptation to changing bioenvironments" (or related => "species adaptation to a changed bioenvironment") - iac - Enjoy! :) Drbogdan (talk) 23:39, 5 August 2019 (UTC)[reply]

IMHO (1) Species play only a part of the scope of evolution. Darwin's original title mentioned "species and varieties", and his editor changed the title, and even at that, it mentions "races" (another word for varieties). Anyway, we have progressed beyond Darwin. Evolution is important today because of changes within species, and also because it accounts for the tree-like structure of taxonomy, as well as a lot of other biology. It is important that we not mention species, because of the misunderstanding that is current that it is only about species.(2) Adaptatation, natural selection, etc. are not evolution. They are mechanisms of evolution. It is important that we let it be known what evolution is. (3) Evolution is the change in the hereditary traits (genotype) of populations, whatever the level of the results (whether the result is speciation or cladogenesis or just a minor variation, or even no discernable change in phenotye), whatever the mechanisms are (for example: genetic drift, sexual selection, symbiosis, artificial selection, hybridization). IMHO TomS TDotO (talk) 01:34, 6 August 2019 (UTC)[reply]

I agree that there should be no mention of species and that it should be clear that we are talking about biology, and not e.g. stars. So I offer the following versions for consideration:

1) change in the hereditary traits (genotype) of populations (57)

2) change of heritable traits in biological populations (52)

3) change in the heritable traits of populations (45)

4) heritable change in biological populations (42) - I don't immediately see how the concept can be reduced further than this. Should it be "in" or "of"?

The word trait appears in the second paragraph of the lead without definition, and I wonder whether it should appear in the first line as follows:

"Evolution is change in the heritable characteristics (traits) of biological populations over successive generations." Plantsurfer 10:26, 6 August 2019 (UTC)[reply]
Not bad. I could go along with 4) "heritable change of biological populations", which can be further shortened to "heritable change of populations" because all populations are biological. Rowan Forest (talk) 16:01, 6 August 2019 (UTC)[reply]
Yes - "heritable change of populations" seems good to me as well - iac - Enjoy! :) Drbogdan (talk) 16:07, 6 August 2019 (UTC)[reply]
hmmm - "heritable change in populations" is ambiguous because it can be misconstrued as referring to human populations. The qualification "biological" is therefore needed. Plantsurfer 23:18, 6 August 2019 (UTC)[reply]
@Plantsurfer and Rowan Forest: and others - maybe "heritable change of biopopulations" (34 characters) would be better? - for support, please see => https://www.cambridge.org/core/journals/behavioral-and-brain-sciences/article/biopopulations-not-biospecies-are-individuals-and-evolve/A20A52EDD50505B76CAD516AC299E0F4 - iac - Enjoy! :) Drbogdan (talk) 01:54, 7 August 2019 (UTC)[reply]
Yes, that could work Plantsurfer 09:32, 7 August 2019 (UTC)[reply]
"Biopopulations"? My Newspeak dictionary seems to have gone missing, and the OED goes from "bioplast" to "biordinal" with nothing in between. Over-cryptic brevity is no virtue here. Again, 40 characters is a suggestion, not a hard limit. Just plain Bill (talk) 11:13, 7 August 2019 (UTC)[reply]
OK, so is there consensus for "heritable change in biological populations"? Plantsurfer 11:24, 7 August 2019 (UTC)[reply]
OK by me... Just plain Bill (talk) 11:32, 7 August 2019 (UTC)[reply]
OK by me as well -- Drbogdan (talk) 14:11, 7 August 2019 (UTC)[reply]
Looks good to me. Rowan Forest (talk) 14:46, 7 August 2019 (UTC)[reply]

 Done - added to the main article => "{ {short description|heritable change in biological populations}} - for details => please see Talk:Evolution#Edit war over short description?" - *entirely* ok with me to rv/rm/mv/ce the edit of course - iac - Enjoy! :) Drbogdan (talk) 14:54, 7 August 2019 (UTC)[reply]

Issues with "mutation bias" section

Updates

The Mutation bias page takes care of some of the things in my initial list of suggestions. Below is my revised list. Dabs (talk) 13:43, 26 August 2019 (UTC)[reply]

Specific things to add or fix

  • refer to Mutation bias for examples
  • note some of the main arguments for mutation bias: effects of nucleotide mutation biases on genome composition or codon usage, e.g., GC bias or strand bias. This is the main body of literature, and the effects typically are assumed to be neutral. There is very solid empirical work on the likely effects of mutation bias on patterns of composition in bacterial genomes.
  • cite Bulmer (1991) for the mutation-selection-drift theory, not Lynch or Smith
  • relate to Developmental bias (separate article)
  • refer to effects of biases in the introduction of variation, in adaptive or neutral evolution, per Yampolsky and Stoltzfus
  • history: Sueoka (1962) and Freese (1962) were the first to invoke a mutational hypothesis to account for genome composition. Cox and Yanofsky (1967) characterized an E. coli mutant with a GC bias.
  • the phenotype-first theory is not relevant here. biases in phenotypic responses are not mutation biases.
  • the arguments about loss of function are confusing here. The pressure of recurrent mutation is a classic explanation for the loss of features but it is probably not generally the correct explanation because it occurs too slowly, although the case of Maughan, et al cited here is appropriate if atypical. This was never previously called "mutation bias." What is the bias?

some saved passages and extra passages

saved from previous version. this is good stuff, but it goes in the Developmental bias article:

Developmental or mutational biases have also been observed in morphological evolution.[1][2]

saved from previous version. IMHO this is a "mutation pressure" argument not a mutation bias argument

Mutations leading to the loss of function of a gene are much more common than mutations that produce a new, fully functional gene. Most loss of function mutations are selected against. But when selection is weak, mutation bias towards loss of function can affect evolution.[3] For example, pigments are no longer useful when animals live in the darkness of caves, and tend to be lost.[4] This kind of loss of function can occur because of mutation bias, and/or because the function had a cost, and once the benefit of the function disappeared, natural selection leads to the loss. Loss of sporulation ability in Bacillus subtilis during laboratory evolution appears to have been caused by mutation bias, rather than natural selection against the cost of maintaining sporulation ability.[5] When there is no selection for loss of function, the speed at which loss evolves depends more on the mutation rate than it does on the effective population size,[6] indicating that it is driven more by mutation bias than by genetic drift. In parasitic organisms, mutation bias leads to selection pressures as seen in Ehrlichia. Mutations are biased towards antigenic variants in outer-membrane proteins.
@Dabs: Which term is preferred and most widely used? Is it "biased mutation?" "mutational bias"? Or "mutation bias"? danielkueh (talk) 04:00, 31 August 2019 (UTC)[reply]

References

  1. ^ Kiontke, Karin; Barrière, Antoine; Kolotuev, Irina; et al. (November 2007). "Trends, Stasis, and Drift in the Evolution of Nematode Vulva Development". Current Biology. 17 (22): 1925–1937. Bibcode:1996CBio....6.1213A. doi:10.1016/j.cub.2007.10.061. ISSN 0960-9822. PMID 18024125.
  2. ^ Braendle, Christian; Baer, Charles F.; Félix, Marie-Anne (March 12, 2010). Barsh, Gregory S. (ed.). "Bias and Evolution of the Mutationally Accessible Phenotypic Space in a Developmental System". PLOS Genetics. 6 (3): e1000877. doi:10.1371/journal.pgen.1000877. ISSN 1553-7390. PMC 2837400. PMID 20300655.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  3. ^ Haldane, J.B.S. (January–February 1933). "The Part Played by Recurrent Mutation in Evolution". The American Naturalist. 67 (708): 5–19. doi:10.1086/280465. ISSN 0003-0147. JSTOR 2457127.
  4. ^ Protas, Meredith; Conrad, Melissa; Gross, Joshua B.; et al. (March 6, 2007). "Regressive Evolution in the Mexican Cave Tetra, Astyanax mexicanus". Current Biology. 17 (5): 452–454. Bibcode:1996CBio....6.1213A. doi:10.1016/j.cub.2007.01.051. ISSN 0960-9822. PMC 2570642. PMID 17306543.
  5. ^ Maughan, Heather; Masel, Joanna; Birky, C. William, Jr.; Nicholson, Wayne L. (October 2007). "The Roles of Mutation Accumulation and Selection in Loss of Sporulation in Experimental Populations of Bacillus subtilis". Genetics. 177 (2): 937–948. doi:10.1534/genetics.107.075663. ISSN 0016-6731. PMC 2034656. PMID 17720926.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  6. ^ Masel, Joanna; King, Oliver D.; Maughan, Heather (January 2007). "The Loss of Adaptive Plasticity during Long Periods of Environmental Stasis". The American Naturalist. 169 (1): 38–46. doi:10.1086/510212. ISSN 0003-0147. PMC 1766558. PMID 17206583.

add Anaxagoras

Anaxagoras "that animals originally came into existence in moisture, and after this one from another" link to orgin of life Afrodite aVrodiTe/maTriya/nasTroyenye/(2make3) from foam of sea quite curent view [[origin of life] . 99.90.196.227 (talk) 02:34, 22 September 2019 (UTC) By the way why this is closed so it may be worth to look if sourced.[reply]

Not done: because you need to make your request clearer. Also, wasn't that Anaximander?— Preceding unsigned comment added by Sumanuil (talkcontribs) 03:46, 22 September 2019 (UTC)[reply]

Evolution ≠ abiogenesis. -Rowan Forest (talk) 00:39, 14 October 2019 (UTC)[reply]

Please review

Please review article content versus source content for the second reference appearing, superscript [2], linking to an NAS webpage. The citation does not support the sentence to which it is attached—the page that the link currently opens contains no definition of evolution; rather, it is a page promoting NAS activities on education in evolutionary biology. And even if elements of a definition might be patched together from fragments of meaning on the page, this is no way to create a consensus definition of this important term. As the first sentence of the lede of a very critical article in the biosciences, the definition deserves 3-4 citations from top tertiary and secondary sources, supporting a consensus meaning (or laying out variant meanings in use by experts). To have one citation and one misdirect does the article and subject no service. And while the NAS source is of some interest, it does not belong as a citation to this definition—perhaps rather, in Further reading. (From one that has taught evolutionary genetics to undergraduates at an Ivy.) Cheers. 67.167.8.141 (talk) 17:04, 13 November 2019 (UTC)[reply]

Agreed, "http://www.nas.edu/evolution/definitions.html" would probably be a better link. GNT316 (talk) 18:02, 13 November 2019 (UTC)[reply]