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Other distinctive subbranches of Haplogroup C-M130 have been found to be specific to certain populations within restricted geographical territories, and even where these other branches are found, they tend to appear as a very low-frequency, minor component of the palette of Y-chromosome diversity within those territories. Haplogroup C-M8, an ancient but at present extremely rare lineage, is specific to the [[Japanese people|Japanese]] and [[Ryukyuan people|Ryukyuan]] populations of [[Japan]], among whom it occurs with a frequency of about 5% or less. Haplogroup C-M38 is found among certain local populations within [[Indonesia]], [[Melanesia]], [[Micronesia]], and [[Polynesia]]; among the populations of some islands of Polynesia, Haplogroup C-M38 has become the [[modal haplogroup]], probably due to severe [[founder effect]]s and [[genetic drift]]. Haplogroup C4 is the most common haplogroup among [[indigenous Australians]], and it has not been found outside of that continent. Haplogroup C5 has been detected with low frequency in samples from [[India]], [[Nepal]],<ref name=Gayden2007 /><ref name=Fornarino2009/> [[Pakistan]], [[Afghanistan]], [[Arabia]],<ref name=Cadenas2008/><ref name=AbuAmero2009/> and northern [[China]].<ref name=HuaZhong2010/>
Other distinctive subbranches of Haplogroup C-M130 have been found to be specific to certain populations within restricted geographical territories, and even where these other branches are found, they tend to appear as a very low-frequency, minor component of the palette of Y-chromosome diversity within those territories. Haplogroup C-M8, an ancient but at present extremely rare lineage, is specific to the [[Japanese people|Japanese]] and [[Ryukyuan people|Ryukyuan]] populations of [[Japan]], among whom it occurs with a frequency of about 5% or less. Haplogroup C-M38 is found among certain local populations within [[Indonesia]], [[Melanesia]], [[Micronesia]], and [[Polynesia]]; among the populations of some islands of Polynesia, Haplogroup C-M38 has become the [[modal haplogroup]], probably due to severe [[founder effect]]s and [[genetic drift]]. Haplogroup C4 is the most common haplogroup among [[indigenous Australians]], and it has not been found outside of that continent. Haplogroup C5 has been detected with low frequency in samples from [[India]], [[Nepal]],<ref name=Gayden2007 /><ref name=Fornarino2009/> [[Pakistan]], [[Afghanistan]], [[Arabia]],<ref name=Cadenas2008/><ref name=AbuAmero2009/> and northern [[China]].<ref name=HuaZhong2010/>


Haplogroup C-RPS4Y<small>711</small>(xC-M8, C-M217) Y-DNA has been found in 6/35 = 17% of a sample of [[Yao people|Yao]] from [[Bama Yao Autonomous County|Bama]], [[Guangxi]] in south-central China, 4/35 = 11% of a sample of [[Hui people|Hui]] and 2/70 = 3% of a pair of samples of [[Uyghur people|Uyghur]] from northwestern China, and 3/45 = 7% of a sample of [[Nani people|Hezhe]] and 1/26 = 4% of a sample of [[Evenks|Ewenki]] from northeastern China.<ref name=Xue2006/> Haplogroup C-RPS4Y<small>711</small>(xM8, M38, M217) has been found in 48.5% (16/33) of a sample of [[indigenous Australians|Australian aboriginal people]], 20% (12/60) of a sample of [[Yao people|Yao]], 6.1% (3/49) of a sample of [[Tujia people|Tujia]], 5.9% (1/17) of a sample of [[Micronesia]]ns, 5.5% (3/55) of a sample of eastern [[Indonesia]]ns, 4.0% (1/25) of a sample of western Indonesians, 3.3% (3/91) of a sample of [[Sri Lanka]]ns, 3.1% (1/32) of a sample of [[Malay people|Malays]], 2.5% (10/405) of a sample of [[India]]ns, 2.2% (1/46) of a sample of [[Papua New Guinea]]ns, 1.7% (1/58) of a sample of [[Miao people|Miao]], and 1.5% (1/67) of a sample of [[Uyghur people|Uyghurs]].<ref name=Hammer2006/> Haplogroup C-M216(xM8, M38, M217, M210, M356) has been found in 3.9% (3/77) of a sample of the general population of [[Kathmandu]], Nepal.<ref name=Gayden2007>{{cite journal | doi = 10.1086/516757 | last1 = Gayden | first1 = Tenzin | last2 = Cadenas | first2 = Alicia M. | last3 = Regueiro | first3 = Maria | author-separator =, | last4 = Singh | author-name-separator= | year = 2007 | first4 = NB | last5 = Zhivotovsky | first5 = LA | last6 = Underhill | first6 = PA | last7 = Cavalli-Sforza | first7 = LL | last8 = Herrera | first8 = RJ | title = The Himalayas as a Directional Barrier to Gene Flow | url = | journal = American Journal of Human Genetics | volume = 80 | issue = 5| pages = 884–894 | pmid = 17436243 | pmc = 1852741 }}</ref> According to a study published in 2010, C-RPS4Y(xM38, M217) Y-DNA occurs with rather high frequency in most populations of central [[Indonesia]] (115/394 = 29.2% Flores, 21/92 = 22.8% Lembata, 19/86 = 22.1% Borneo, 6/54 = 11.1% [[Mandar people|Mandar]], 1/9 = 11.1% Timor, but only 1/350 = 0.3% Sumba). C-RPS4Y(xM38, M217) Y-DNA generally becomes rare toward the west (2/61 = 3.3% Java, 1/32 = 3.1% Malaysia, 9/641 = 1.4% Balinese, 0/38 Batak Toba, 0/60 Nias, but 10/74 = 13.5% Mentawai) and toward the east (1/28 = 3.6% Alor, 0/30 Moluccas, 1/15 = 6.7% PNG Coast, 0/33 PNG Highland, 0/10 Nasioi, 0/44 Maewo (Vanuatu), 1/16 = 6.3% Micronesia, 0/64 Polynesia).<ref name = "Karafet2010">Tatiana M. Karafet, Brian Hallmark, Murray P. Cox ''et al.'', "Major East–West Division Underlies Y Chromosome Stratification across Indonesia," ''Mol. Biol. Evol.'' 27(8):1833–1844. 2010 doi:10.1093/molbev/msq063</ref>
Haplogroup C-RPS4Y<small>711</small>(xC-M8, C-M217) Y-DNA has been found in 6/35 = 17% of a sample of [[Yao people|Yao]] from [[Bama Yao Autonomous County|Bama]], [[Guangxi]] in south-central China, 4/35 = 11% of a sample of [[Hui people|Hui]] and 2/70 = 3% of a pair of samples of [[Uyghur people|Uyghur]] from northwestern China, and 3/45 = 7% of a sample of [[Nani people|Hezhe]] and 1/26 = 4% of a sample of [[Evenks|Ewenki]] from northeastern China.<ref name=Xue2006/> Haplogroup C-RPS4Y<small>711</small>(xM8, M38, M217) has been found in 48.5% (16/33) of a sample of [[indigenous Australians|Australian aboriginal people]], 20% (12/60) of a sample of [[Yao people|Yao]], 6.1% (3/49) of a sample of [[Tujia people|Tujia]], 5.9% (1/17) of a sample of [[Micronesia]]ns, 5.5% (3/55) of a sample of eastern [[Indonesia]]ns, 4.0% (1/25) of a sample of western Indonesians, 3.3% (3/91) of a sample of [[Sri Lanka]]ns, 3.1% (1/32) of a sample of [[Malay people|Malays]], 2.5% (10/405) of a sample of [[India]]ns, 2.2% (1/46) of a sample of [[Papua New Guinea]]ns, 1.7% (1/58) of a sample of [[Miao people|Miao]], and 1.5% (1/67) of a sample of [[Uyghur people|Uyghurs]].<ref name=Hammer2006/> Haplogroup C-M216(xM8, M38, M217, M210, M356) has been found in 3.9% (3/77) of a sample of the general population of [[Kathmandu]], Nepal.<ref name=Gayden2007>{{cite journal | doi = 10.1086/516757 | last1 = Gayden | first1 = Tenzin | last2 = Cadenas | first2 = Alicia M. | last3 = Regueiro | first3 = Maria | author-separator =, | last4 = Singh | author-name-separator= | year = 2007 | first4 = NB | last5 = Zhivotovsky | first5 = LA | last6 = Underhill | first6 = PA | last7 = Cavalli-Sforza | first7 = LL | last8 = Herrera | first8 = RJ | title = The Himalayas as a Directional Barrier to Gene Flow | url = | journal = American Journal of Human Genetics | volume = 80 | issue = 5| pages = 884–894 | pmid = 17436243 | pmc = 1852741 }}</ref> According to a study published in 2010, C-RPS4Y(xM38, M217) Y-DNA occurs with rather high frequency in most populations of central [[Indonesia]] (115/394 = 29.2% Flores, 21/92 = 22.8% Lembata, 19/86 = 22.1% Borneo, 6/54 = 11.1% [[Mandar people|Mandar]], 1/9 = 11.1% Timor, but only 1/350 = 0.3% Sumba). C-RPS4Y(xM38, M217) Y-DNA generally becomes rare toward the west (2/61 = 3.3% Java, 1/32 = 3.1% Malaysia, 9/641 = 1.4% Balinese, 0/38 Batak Toba, 0/60 Nias, but 10/74 = 13.5% Mentawai) and toward the east (1/28 = 3.6% Alor, 0/30 Moluccas, 1/15 = 6.7% PNG Coast, 0/33 PNG Highland, 0/10 Nasioi, 0/44 Maewo (Vanuatu), 1/16 = 6.3% Micronesia, 0/64 Polynesia).<ref name = "Karafet2010">{{cite journal | author = Karafet Tatiana M., Hallmark Brian, Cox Murray P. ''et al.'' | year = 2010 | title = Major East–West Division Underlies Y Chromosome Stratification across Indonesia | url = | journal = Mol. Biol. Evol. | volume = 27 | issue = 8| pages = 1833–1844 | doi = 10.1093/molbev/msq063 }}</ref>


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'''C-P55''' ''Found in the [[New Guinea Highlands|highlands of New Guinea]]''<ref name=Scheinfeldt2006/>
'''C-P55''' ''Found in the [[New Guinea Highlands|highlands of New Guinea]]''<ref name=Scheinfeldt2006/>


'''C-V20''' ''Found with low frequency in [[Europe]]ans''<ref name = "Scozzari2012">Scozzari R, Massaia A, D’Atanasio E, Myres NM, Perego UA, ''et al.'' (2012) Molecular Dissection of the Basal Clades in the Human Y Chromosome Phylogenetic Tree. ''PLoS ONE'' 7(11): e49170. doi:10.1371/journal.pone.0049170</ref>
'''C-V20''' ''Found with low frequency in [[Europe]]ans''<ref name = "Scozzari2012">{{cite journal | author = Scozzari R, Massaia A, D'Atanasio E, Myres NM, Perego UA ''et al.'' | year = 2012 | title = Molecular Dissection of the Basal Clades in the Human Y Chromosome Phylogenetic Tree | url = | journal = PLoS ONE | volume = 7 | issue = 11| page = e49170 | doi = 10.1371/journal.pone.0049170 }}</ref>
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Revision as of 18:45, 18 March 2013

Haplogroup C
Possible time of origin50,000 years
Possible place of originAsia
AncestorCF
DescendantsC-M8, C-M38, C-M217, C4, C5, C6
Defining mutationsM130/RPS4Y711, M216, P184, P255, P260

In human genetics, Haplogroup C is a Y-chromosome haplogroup, defined by UEPs M130/RPS4Y711, M216, P184, P255, and P260, which are all SNP mutations. It is a sibling clade of Haplogroup F, within the more ancient grouping of Haplogroup CF. Unlike some other human Y-DNA clades of a similar age depth, all clades of Haplogroup CF are non-African; that is, they do not occur exclusively in Africa, unlike A and B. Haplogroup C-M130 in particular appears to be one of the Y-DNA clades which dispersed especially early towards the east; its phylogeographic distribution supports a single coastal Out-of-Africa route by way of the Indian subcontinent, which eventually led to the early settlement of modern humans in mainland Southeast Asia.[1]

Origins

Haplogroup C-M130 seems to have come into existence shortly after SNP mutation M168 occurred for the first time, bringing the modern Haplogroup CT into existence, from which Haplogroup CF, and in turn Haplogroup C, derived. This was probably at least 60,000 years before present. Although Haplogroup C-M130 attains its highest frequencies among the indigenous populations of Mongolia, the Russian Far East, Polynesia, Australia, and at moderate frequency in the Korean Peninsula and among the Manchus, it displays high diversity among modern populations of India. It is hypothesized that Haplogroup C-M130 either originated or underwent its longest period of evolution within India or the greater South Asian coastal region. The highest diversity is observed in Southeast Asia, and its northward expansion in East Asia started approximately 40,000 years ago.[1]

It represents a great coastal migration along Southern Asia, into Southeast Asia and Australia, and up the East Asian coast. It is believed to have migrated to the Americas some 6,000-8,000 years before present, and was carried by Na-Dené-speaking peoples into the northwest Pacific coast of North America. Some have hypothesized that Haplogroups C-M130 and D were brought together to East Asia by a single population that became the first successful modern human colonizers of that region, but at present the distributions of Haplogroups C-M130 and D are different, with various subtypes of Haplogroup C-M130 being found at high frequency among the Australian aborigines, Polynesians, Vietnamese, Kazakhs, Mongolians, Manchurians, Koreans, and indigenous inhabitants of the Russian Far East; and at moderate frequencies elsewhere throughout Asia and Oceania, including India and Southeast Asia; whereas Haplogroup D is found at high frequencies only among the Tibetans, Japanese peoples, and Andaman Islanders, and has been found neither in India nor among the aboriginal inhabitants of the Americas or Oceania.

Distribution

The distribution of Haplogroup C-M130 is generally limited to populations of northern Asia, eastern Asia, Oceania, and the Americas. There is a tendency for Haplogroup C-M130 to appear as the minor component of Y-chromosome diversity among a population in which the major component is accounted for by subclades of Haplogroup K (M9). Haplogroup C-M130 also rarely co-occurs with Haplogroup D among populations of northern Eurasia.

Due to the tremendous age of this macro-haplogroup, numerous mutations have had time to accumulate on the background of a Haplogroup C-M130 Y-chromosome, and several regionally important subbranches of Haplogroup C-M130 have been identified. Haplogroup C-M217 is probably the most important of these, as the geographic extent of its dispersal is without compare, stretching longitudinally from regional subgroups of the Eastern Europeans in Central Europe all the way to the Wayuu people in northern Colombia and northwest Venezuela, and latitudinally from the Evens and Koryaks of the Russian Far East and the Athabaskan peoples of Alaska and western Canada all the way to Turkey, Pakistan, Vietnam, and the Malay Archipelago. The highest frequencies of Haplogroup C-M217 are found among the populations of Mongolia and the Russian Far East, where it is generally the modal haplogroup. Haplogroup C-M217 is the only variety of Haplogroup C-M130 to be found among Native Americans, among whom it reaches its highest frequency in Na-Dené populations.

Other distinctive subbranches of Haplogroup C-M130 have been found to be specific to certain populations within restricted geographical territories, and even where these other branches are found, they tend to appear as a very low-frequency, minor component of the palette of Y-chromosome diversity within those territories. Haplogroup C-M8, an ancient but at present extremely rare lineage, is specific to the Japanese and Ryukyuan populations of Japan, among whom it occurs with a frequency of about 5% or less. Haplogroup C-M38 is found among certain local populations within Indonesia, Melanesia, Micronesia, and Polynesia; among the populations of some islands of Polynesia, Haplogroup C-M38 has become the modal haplogroup, probably due to severe founder effects and genetic drift. Haplogroup C4 is the most common haplogroup among indigenous Australians, and it has not been found outside of that continent. Haplogroup C5 has been detected with low frequency in samples from India, Nepal,[2][3] Pakistan, Afghanistan, Arabia,[4][5] and northern China.[1]

Haplogroup C-RPS4Y711(xC-M8, C-M217) Y-DNA has been found in 6/35 = 17% of a sample of Yao from Bama, Guangxi in south-central China, 4/35 = 11% of a sample of Hui and 2/70 = 3% of a pair of samples of Uyghur from northwestern China, and 3/45 = 7% of a sample of Hezhe and 1/26 = 4% of a sample of Ewenki from northeastern China.[6] Haplogroup C-RPS4Y711(xM8, M38, M217) has been found in 48.5% (16/33) of a sample of Australian aboriginal people, 20% (12/60) of a sample of Yao, 6.1% (3/49) of a sample of Tujia, 5.9% (1/17) of a sample of Micronesians, 5.5% (3/55) of a sample of eastern Indonesians, 4.0% (1/25) of a sample of western Indonesians, 3.3% (3/91) of a sample of Sri Lankans, 3.1% (1/32) of a sample of Malays, 2.5% (10/405) of a sample of Indians, 2.2% (1/46) of a sample of Papua New Guineans, 1.7% (1/58) of a sample of Miao, and 1.5% (1/67) of a sample of Uyghurs.[7] Haplogroup C-M216(xM8, M38, M217, M210, M356) has been found in 3.9% (3/77) of a sample of the general population of Kathmandu, Nepal.[2] According to a study published in 2010, C-RPS4Y(xM38, M217) Y-DNA occurs with rather high frequency in most populations of central Indonesia (115/394 = 29.2% Flores, 21/92 = 22.8% Lembata, 19/86 = 22.1% Borneo, 6/54 = 11.1% Mandar, 1/9 = 11.1% Timor, but only 1/350 = 0.3% Sumba). C-RPS4Y(xM38, M217) Y-DNA generally becomes rare toward the west (2/61 = 3.3% Java, 1/32 = 3.1% Malaysia, 9/641 = 1.4% Balinese, 0/38 Batak Toba, 0/60 Nias, but 10/74 = 13.5% Mentawai) and toward the east (1/28 = 3.6% Alor, 0/30 Moluccas, 1/15 = 6.7% PNG Coast, 0/33 PNG Highland, 0/10 Nasioi, 0/44 Maewo (Vanuatu), 1/16 = 6.3% Micronesia, 0/64 Polynesia).[8]

Subclade distribution

Haplogroup C-M8
Possible time of origin11,650 (95% CI 8,460–18,690) years before present[7] or 10,000 [ s.e. ±3,500] years before present[1]
Possible place of originprobably the Japanese Archipelago
AncestorC
Defining mutationsM8, M105, M131, P122
Highest frequenciesTokushima 10%,[7] Okinawa 6.8% [4.4%[9]-8%[10]], Honshū 4.9%[9] (Aomori 7.7%,[7] Shizuoka 4.9%[7]), Kyūshū 0%[7]-3.8%[9]
Haplogroup C-M38
Possible time of origin10,600 [4,500–30,300],[11] or 49,600 [42,000–61,000] years BP[12]
Possible place of originMaritime Southeast Asia or Melanesia
AncestorC-M130
Defining mutationsM38
Highest frequenciesLani 100%,[11] Dani 92%,[11] Cook Islands 78%[13]-82%,[11] Samoa 62%[13]-72%,[14] Tahiti 64%,[14] Sumba 57%,[14] Māori 43%,[15] Tonga 34%,[13][14] East Futuna 30%,[13] Maewo 23%,[14] Moluccas 15%[11]-28%,[14] Fiji 22%,[13] Asmat 20%,[11] New Guinea coast 14%[14]-23%,[11] Flores 17%,[14] Tuvalu 17%,[13] Tolai 12.5%[11]-21%,[13] Nusa Tenggara 16%,[11] Admiralty Islands 16%,[13] West Sulawesi 12.5%[14]
Haplogroup C-M217
Possible time of origin11,900 ± 4,800 years before present[16]
AncestorC
Defining mutationsM217, P44, PK2
Highest frequenciesOroqen 61%[6]-91%,[17] Evens 5%[18]-74%,[7] Evenks 44%[17]-71%,[16][18] Buryats 60%[17]-84%,[9] Mongolians 52%[17]-54%,[6] Tanana 42%,[19] Kazakhs 40%,[17] Hazaras 40%,[20] Nivkhs 38%,[9] Koryaks 33%,[16][18] Daur 31%,[6] Yukaghir 31%,[21] Sibe 27%,[6] Manchu 26%[6]-27%,[17] Altai 22%[7]-24%,[17] Hezhe 22%,[6] Uzbeks 20%,[17] Tujia 18%,[17] Hani 18%,[6] Cheyenne 16%,[19] Apache 15%,[19] Tuvans 15%,[21] Ainu 12.5%[9]-25%,[7] Koreans 12%[17]-16%,18%[6] Hui 11%,[6][17] Sioux 11%,[19] Han Chinese 5%[17]-20%[6]

This phylogenetic tree of haplogroup C-M130 subclades is based on the YCC 2008 tree[22] and subsequent published research.

C-M130 The paragroup is found with low frequency in Asia and Oceania Patrilines that belong to Haplogroup C-M130 but do not belong to any of its identified subgroups are labeled as Haplogroup C*, which are found at low frequencies along the southern coast of Asia from India to Vietnam and into the interior of Yunnan province in southwestern China, as well as throughout the Philippines, Indonesia, and Micronesia. Haplogroup C* Y-chromosomes have also been detected, but only at even lower frequencies, among populations of coastal New Guinea and island Melanesia; this suggests that, within Oceania, Haplogroup C* is associated with populations of Austronesian cultural affiliation, despite the fact that the derived haplogroup C4 is predominant among the indigenous inhabitants of Australia. Several examples of Haplogroup C*, which appear to be closely related to a scatter of modern South Asian C* haplotypes, have also been found at vanishingly low frequency among the Turkic peoples of Central Asia. Some researchers have also reported finding a Haplogroup C-RPS4Y Y-chromosome in a Lebanese man with a sample size of only 31 individuals (i.e., 1/31 or approximately 3.2%), but it is not clear whether this was really a C* chromosome, in which case descent from a South Asian immigrant might be indicated, or whether it belonged to an identified subclade of Haplogroup C, such as C-M217, which would make it more likely that this particular Lebanese man descended from a Turco-Mongolor [Turk] invader.

C-M8 Found with low frequency in Japan

C-M38 Found in eastern Indonesia, Melanesia, Micronesia, and Polynesia

  • C-P54

C-M217 -Found with high frequency in Buryats, Daurs, Hazaras, Itelmens, Kalmyks, Koryaks, Manchus, Mongolians, Oroqens, and Sibes, with a moderate distribution among other Tungusic peoples, Koreans, Ainus, Nivkhs, Altaians, Tuvinians, Uzbeks, Han Chinese, Tujia, Hani, and Hui[6][7][9][20][23][24][25]

  • C-P62

C-M347 Found with high frequency in the indigenous peoples of Australia[28]

  • C-M210

C-M356 Found with low frequency in South Asia, Central Asia, and Southwest Asia[2][3][4][5][20][29]

  • C-P92

C-P55 Found in the highlands of New Guinea[12]

C-V20 Found with low frequency in Europeans[30]

Phylogenetics

Phylogenetic history

Prior to 2002, there were in academic literature at least seven naming systems for the Y-Chromosome Phylogenetic tree. This lead to considerable confusion. In 2002, the major research groups came together and formed the Y-Chromosome Consortium (YCC). They published a joint paper that created a single new tree that all agreed to use. The table below brings together all of these works at the point of the landmark 2002 YCC Tree. This allows a researcher reviewing older published literature to quickly move between nomenclatures.

YCC 2002/2008 (Shorthand) (α) (β) (γ) (δ) (ε) (ζ) (η) YCC 2002 (Longhand) YCC 2005 (Longhand) YCC 2008 (Longhand) YCC 2010r (Longhand) ISOGG 2006 ISOGG 2007 ISOGG 2008 ISOGG 2009 ISOGG 2010 ISOGG 2011 ISOGG 2012
C-M216 10 V 1F 16 Eu6 H1 C C* C C C C C C C C C C
C-M8 10 V 1F 19 Eu6 H1 C C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1
C-M38 10 V 1F 16 Eu6 H1 C C2* C2 C2 C2 C2 C2 C2 C2 C2 C2 C2
C-P33 10 V 1F 18 Eu6 H1 C C2a C2a C2a1 C2a1 C2a C2a C2a1 C2a1 C2a1 removed removed
C-P44 10 V 1F 17 Eu6 H1 C C3* C3 C3 C3 C3 C3 C3 C3 C3 C3 C3
C-M93 10 V 1F 17 Eu6 H1 C C3a C3a C3a C3a C3a C3a C3a C3a C3a C3a C3a1
C-M208 10 V 1F 17 Eu6 H1 C C3b C2b C2a C2a C2b C2b C2a C2a C2a C2a C2a
C-M210 36 V 1F 17 Eu6 H1 C C3c C2c C4a C4a C4b C4b C4a C4a C4a C4a C4a

Research publications

The following research teams per their publications were represented in the creation of the YCC Tree.

3

===Phylogenetic Ttte=December 2012}}

Notable members

One particular haplotype within Haplogroup C-M217 has received a great deal of attention for the possibility that it may represent direct patrilineal descent from Genghis Khan.

See also

Genetics

3

Y-DNA C Subclades

3

Y-DNA backbone tree

References

  1. ^ a b c d e f Zhong H, Shi H, Qi XB; et al. (2010). "Global distribution of Y-chromosome haplogroup C-M130 reveals the prehistoric migration routes of African exodus and early settlement in East Asia". J. Hum. Genet. 55 (7): 428–35. doi:10.1038/jhg.2010.40. PMID 20448651. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  2. ^ a b c Gayden, Tenzin; Cadenas, Alicia M.; Regueiro, Maria; Singh, NB; Zhivotovsky, LA; Underhill, PA; Cavalli-Sforza, LL; Herrera, RJ (2007). "The Himalayas as a Directional Barrier to Gene Flow". American Journal of Human Genetics. 80 (5): 884–894. doi:10.1086/516757. PMC 1852741. PMID 17436243. {{cite journal}}: Cite has empty unknown parameter: |author-name-separator= (help); Unknown parameter |author-separator= ignored (help)
  3. ^ a b Simona Fornarino, Maria Pala, Vincenza Battaglia et al., Mitochondrial and Y-chromosome diversity of the Tharus (Nepal): a reservoir of genetic variation, BMC Evolutionary Biology (2009), 9:154 doi:10.1186/1471-2148-9-154 PMID 19573232
  4. ^ a b Cadenas, Alicia M; Zhivotovsky, Lev A; Cavalli-Sforza, Luca L; Underhill, PA; Herrera, RJ (2008). "Y-chromosome diversity characterizes the Gulf of Oman". European Journal of Human Genetics. 16 (3): 374–386. doi:10.1038/sj.ejhg.5201934. PMID 17928816. {{cite journal}}: Cite has empty unknown parameter: |author-name-separator= (help); Unknown parameter |author-separator= ignored (help)
  5. ^ a b Abu-Amero, Khaled K; Hellani, Ali; Gonz�lez, Ana M; Larruga, Jose M; Cabrera, Vicente M; Underhill, Peter A (2009). "Saudi Arabian Y-Chromosome diversity and its relationship with nearby regions". BMC Genetics. 10: 59. doi:10.1186/1471-2156-10-59. PMC 2759955. PMID 19772609. {{cite journal}}: replacement character in |last3= at position 5 (help)CS1 maint: unflagged free DOI (link)
  6. ^ a b c d e f g h i j k l Xue Y, Zerjal T, Bao W; et al. (2006). "Male demography in East Asia: a north-south contrast in human population expansion times". Genetics. 172 (4): 2431–9. doi:10.1534/genetics.105.054270. PMC 1456369. PMID 16489223. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  7. ^ a b c d e f g h i j k Hammer MF, Karafet TM, Park H; et al. (2006). "Dual origins of the Japanese: common ground for hunter-gatherer and farmer Y chromosomes". J. Hum. Genet. 51 (1): 47–58. doi:10.1007/s10038-005-0322-0. PMID 16328082. {{cite journal}}: Explicit use of et al. in: |author= (help)CS1 maint: multiple names: authors list (link)
  8. ^ Karafet Tatiana M., Hallmark Brian, Cox Murray P.; et al. (2010). "Major East–West Division Underlies Y Chromosome Stratification across Indonesia". Mol. Biol. Evol. 27 (8): 1833–1844. doi:10.1093/molbev/msq063. {{cite journal}}: Explicit use of et al. in: |author= (help)CS1 maint: multiple names: authors list (link)
  9. ^ a b c d e f g Tajima, Atsushi; Hayami, Masanori; Tokunaga, Katsushi; Juji, T; Matsuo, M; Marzuki, S; Omoto, K; Horai, S (2004). "Genetic origins of the Ainu inferred from combined DNA analyses of maternal and paternal lineages". Journal of Human Genetics. 49 (4): 187–193. doi:10.1007/s10038-004-0131-x. PMID 14997363. {{cite journal}}: Cite has empty unknown parameter: |author-name-separator= (help); Unknown parameter |author-separator= ignored (help) Cite error: The named reference "Tajima2004" was defined multiple times with different content (see the help page).
  10. ^ Nonaka I, Minaguchi K, Takezaki N (2007). "Y-chromosomal binary haplogroups in the Japanese population and their relationship to 16 Y-STR polymorphisms". Ann. Hum. Genet. 71 (Pt 4): 480–95. doi:10.1111/j.1469-1809.2006.00343.x. PMID 17274803. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  11. ^ a b c d e f g h i Kayser M, Brauer S, Weiss G; et al. (2003). "Reduced Y-chromosome, but not mitochondrial DNA, diversity in human populations from West New Guinea". Am. J. Hum. Genet. 72 (2): 281–302. doi:10.1086/346065. PMC 379223. PMID 12532283. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  12. ^ a b Scheinfeldt, L.; Friedlaender, F; Friedlaender, J; Latham, K; Koki, G; Karafet, T; Hammer, M; Lorenz, J (2006). "Unexpected NRY Chromosome Variation in Northern Island Melanesia". Molecular Biology and Evolution. 23 (8): 1628–41. doi:10.1093/molbev/msl028. PMID 16754639.
  13. ^ a b c d e f g h Kayser M, Choi Y, van Oven M; et al. (2008). "The impact of the Austronesian expansion: evidence from mtDNA and Y chromosome diversity in the Admiralty Islands of Melanesia". Mol. Biol. Evol. 25 (7): 1362–74. doi:10.1093/molbev/msn078. PMID 18390477. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  14. ^ a b c d e f g h i j Cox MP, Redd AJ, Karafet TM; et al. (2007). "A Polynesian motif on the Y chromosome: population structure in remote Oceania". Hum. Biol. 79 (5): 525–35. PMID 18478968. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  15. ^ Underhill PA, Passarino G, Lin AA; et al. (2001). "Maori origins, Y-chromosome haplotypes and implications for human history in the Pacific". Hum. Mutat. 17 (4): 271–80. doi:10.1002/humu.23. PMID 11295824. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  16. ^ a b c Tatiana M. Karafet, Ludmila P. Osipova, Marina A. Gubina et al., High Levels of Y-Chromosome Differentiation among Native Siberian Populations and the Genetic Signature of a Boreal Hunter-Gatherer Way of Life, Human Biology, December 2002, v. 74, no. 6, pp. 761–789.
  17. ^ a b c d e f g h i j k l Karafet T, Xu L, Du R; et al. (2001). "Paternal population history of East Asia: sources, patterns, and microevolutionary processes". Am. J. Hum. Genet. 69 (3): 615–28. doi:10.1086/323299. PMC 1235490. PMID 11481588. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  18. ^ a b c Pakendorf B, Novgorodov IN, Osakovskij VL, Stoneking M (2007). "Mating patterns amongst Siberian reindeer herders: inferences from mtDNA and Y-chromosomal analyses". Am. J. Phys. Anthropol. 133 (3): 1013–27. doi:10.1002/ajpa.20590. PMID 17492671. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  19. ^ a b c d e Zegura SL, Karafet TM, Zhivotovsky LA, Hammer MF (2004). "High-resolution SNPs and microsatellite haplotypes point to a single, recent entry of Native American Y chromosomes into the Americas". Mol. Biol. Evol. 21 (1): 164–75. doi:10.1093/molbev/msh009. PMID 14595095. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  20. ^ a b c d e Sengupta S, Zhivotovsky LA, King R; et al. (2006). "Polarity and temporality of high-resolution y-chromosome distributions in India identify both indigenous and exogenous expansions and reveal minor genetic influence of Central Asian pastoralists". Am. J. Hum. Genet. 78 (2): 202–21. doi:10.1086/499411. PMC 1380230. PMID 16400607. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  21. ^ a b c Pakendorf B, Novgorodov IN, Osakovskij VL, Danilova AP, Protod'jakonov AP, Stoneking M (2006). "Investigating the effects of prehistoric migrations in Siberia: genetic variation and the origins of Yakuts". Hum. Genet. 120 (3): 334–53. doi:10.1007/s00439-006-0213-2. PMID 16845541. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  22. ^ Karafet TM, Mendez FL, Meilerman MB, Underhill PA, Zegura SL, Hammer MF (2008). "New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree". Genome Research. 18 (5): 830–8. doi:10.1101/gr.7172008. PMC 2336805. PMID 18385274.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  23. ^ a b Lell JT, Sukernik RI, Starikovskaya YB; et al. (2002). "The dual origin and Siberian affinities of Native American Y chromosomes". Am. J. Hum. Genet. 70 (1): 192–206. doi:10.1086/338457. PMC 384887. PMID 11731934. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  24. ^ Wells RS, Yuldasheva N, Ruzibakiev R; et al. (2001). "The Eurasian heartland: A continental perspective on Y-chromosome diversity". Proc. Natl. Acad. Sci. U.S.A. 98 (18): 10244–9. doi:10.1073/pnas.171305098. PMC 56946. PMID 11526236. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  25. ^ Nasidze I, Quinque D, Dupanloup I, Cordaux R, Kokshunova L, Stoneking M (2005). "Genetic evidence for the Mongolian ancestry of Kalmyks". Am. J. Phys. Anthropol. 128 (4): 846–54. doi:10.1002/ajpa.20159. PMID 16028228. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  26. ^ Underhill PA, Shen P, Lin AA; et al. (2000). "Y chromosome sequence variation and the history of human populations". Nat. Genet. 26 (3): 358–61. doi:10.1038/81685. PMID 11062480. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  27. ^ Khar'kov VN, Stepanov VA, Medvedev OF; et al. (2008). "[The origin of Yakuts: analysis of Y-chromosome haplotypes]". Mol. Biol. (Mosk.) (in Russian). 42 (2): 226–37. PMID 18610830. {{cite journal}}: Explicit use of et al. in: |author= (help)CS1 maint: multiple names: authors list (link)
  28. ^ Hudjashov G, Kivisild T, Underhill PA; et al. (2007). "Revealing the prehistoric settlement of Australia by Y chromosome and mtDNA analysis". Proc. Natl. Acad. Sci. U.S.A. 104 (21): 8726–30. doi:10.1073/pnas.0702928104. PMC 1885570. PMID 17496137. {{cite journal}}: Explicit use of et al. in: |author= (help); Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  29. ^ Karafet, T. M.; Mendez, F. L.; Meilerman, M. B.; Underhill, P. A.; Zegura, S. L.; Hammer, M. F. (2008). "New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree". Genome Research. 18 (5): 830–8. doi:10.1101/gr.7172008. PMC 2336805. PMID 18385274.
  30. ^ Scozzari R, Massaia A, D'Atanasio E, Myres NM, Perego UA; et al. (2012). "Molecular Dissection of the Basal Clades in the Human Y Chromosome Phylogenetic Tree". PLoS ONE. 7 (11): e49170. doi:10.1371/journal.pone.0049170. {{cite journal}}: Explicit use of et al. in: |author= (help)CS1 maint: multiple names: authors list (link) CS1 maint: unflagged free DOI (link)

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