Boljoon Church shows old and intricate carvings and bass relief. It is in a pseudo-baroque rococo style. The interior is decorated beautifully. It has a main nave, a transcript, and twenty-eight pillars which support the walls. The walls are as thick as the pillars which are two meters thick and made of mortar and lime. A communion rail with ornate silverworks was stolen from the church.
The Boljoon Church is the oldest remaining original stone church in Cebu. In 1999, the National Historical Institute declared it a National Historical Landmark. The following year, the National Museum declared it as a National Cultural Treasure.