Oppressed by Altan Khan, the Chahars, led by Darayisung Gödeng Khan, moved eastward onto the Liao River in the middle of the 16th century. In the early 17th century Ligden Khan made an expedition to the west because of the Manchu pressure. When he died in Gansu on his way to Tibet, his son Ejei surrendered to the Manchus in 1635 and was given the title of Prince (Qin Wang, 親王), and Inner Mongolian nobility became closely tied to the Qing royal family and intermarried with them extensively. Ejei Khan died in 1661 and was succeeded by his brother Abunai. The Chahar royal family kept favorable relations with the Manchu imperial family until Makata gege, who was a daughter of Hong Taiji and married to the Chahar Mongol prince, died in 1663. After Abunai showed disaffection with Manchu Qing rule, he was placed under house arrested in 1669 in Shenyang and the Kangxi Emperor gave his title to his son Borni. Abunai then bid his time and then he and his brother Lubuzung revolted against the Qing in 1675 during the Revolt of the Three Feudatories, with 3,000 Chahar Mongol followers joining in on the revolt. The revolt was put down within two months, the Qing then crushed the rebels in a battle on April 20, 1675, killing Abunai and all his followers. Their title was abolished, all Chahar Mongol royal males were executed even if they were born to Manchu Qing princesses, and all Chahar Mongol royal females were sold into slavery except the Manchu Qing princesses. As a result of the rebellion, the Chahar Mongols were reorganized into the Chahar Banners and moved to around Zhangjiakou Hill. The Chahar Mongols did not belong to a league but were directly controlled by the Emperor. The Qing authorities resettled some of their population from the suburbs of Hohhot and Dolonnur to Ili after the fall of the Dzungar Khanate in c. 1758. They were largely mixed with Ööled and Torguud of the region.
When Outer Mongolia declared its independence from the Qing in 1911, 100 households under former vice-governor Sumya fled from Xinjiang via the Russian border to Mongolia. They were resettled by the Khalkha in the west of Kyakhta. Sumiya and his Tsahars contributed to the revolution of 1921. They are known as the Selenge's Tsahar since settled in Selenge.
Many of the Chinese troops during the occupation of Mongolia in 1919 were Tsahar (Chahar) Mongols Inner Mongolia, which has been a major cause for animosity between Outer Mongols (Khalkhas) and Inner Mongols.