User:WillowW/List of non-coding RNA

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The following table lists the 574 known families of non-coding RNA and other types of structural or regulatory RNA. We may very well want to change the names in the first column, to make them more explanatory for casual readers. :)

By clicking on the arrows in the top line of the Table, you can sort the whole table by the entries in that column; nifty, no? :)

Rfam families
Full name Rfam ID Type # of sequences in seed alignment # of sequences in full alignment Average length Average sequence identity Abbreviated name
5S ribosomal RNA RF00001 Gene; rRNA; 602 12117 116.8 61 RF00001
5.8S ribosomal RNA RF00002 Gene; rRNA; 63 84358 153.4 78 RF00002
U1 spliceosomal RNA RF00003 Gene; snRNA; splicing; 100 857 161.1 69 RF00003
U2 spliceosomal RNA RF00004 Gene; snRNA; splicing; 77 551 177.6 62 RF00004
tRNA RF00005 Gene; tRNA; 1088 84974 72.7 44 RF00005
Vault RNA RF00006 Gene; 11 22 103.0 74 RF00006
U12 minor spliceosomal RNA RF00007 Gene; snRNA; splicing; 8 21 160.4 67 RF00007
Hammerhead ribozyme (type III) RF00008 Gene; ribozyme; 84 252 54.2 77 RF00008
Nuclear RNase P RF00009 Gene; ribozyme; 59 110 298.8 42 RF00009
Bacterial RNase P class A RF00010 Gene; ribozyme; 116 473 310.0 59 RF00010
Bacterial RNase P class B RF00011 Gene; ribozyme; 31 164 369.7 67 RF00011
Small nucleolar RNA U3 RF00012 Gene; snRNA; guide; CD-box; 21 227 227.2 51 RF00012
6S / SsrS RNA RF00013 Gene; 77 172 182.4 43 RF00013
DsrA RNA RF00014 Gene; sRNA; 4 16 85.8 93 RF00014
U4 spliceosomal RNA RF00015 Gene; snRNA; splicing; 30 270 137.9 63 RF00015
Small nucleolar RNA SNORD14 RF00016 Gene; snRNA; guide; CD-box; 18 218 108.6 64 RF00016
Eukaryotic type signal recognition particle RNA RF00017 Gene; 50 433 292.5 39 RF00017
CsrB/RsmB RNA family RF00018 Gene; sRNA; 7 43 359.7 54 RF00018
Y RNA RF00019 Gene; 16 1278 101.7 67 RF00019
U5 spliceosomal RNA RF00020 Gene; snRNA; splicing; 33 273 117.7 61 RF00020
Spot 42 RNA RF00021 Gene; sRNA; 6 27 117.9 90 RF00021
GcvB RNA RF00022 Gene; 17 29 140.6 64 RF00022
tmRNA RF00023 Gene; 178 350 351.3 46 RF00023
Vertebrate telomerase RNA RF00024 Gene; 37 60 430.7 57 RF00024
Ciliate telomerase RNA RF00025 Gene; 24 22 179.0 52 RF00025
U6 spliceosomal RNA RF00026 Gene; snRNA; splicing; 53 2599 105.7 77 RF00026
let-7 microRNA precursor RF00027 Gene; miRNA; 14 94 82.1 73 RF00027
Group I catalytic intron RF00028 Intron; 30 20085 397.7 53 RF00028
Group II catalytic intron RF00029 Intron; 114 8189 77.9 54 RF00029
RNase MRP RF00030 Gene; ribozyme; 27 45 264.5 51 RF00030
Selenocysteine insertion sequence RF00031 Cis-reg; 63 299 64.2 43 RF00031
Histone 3' UTR stem-loop RF00032 Cis-reg; 64 1046 26.0 78 RF00032
MicF RNA RF00033 Gene; antisense; 8 24 91.6 83 RF00033
RprA RNA RF00034 Gene; sRNA; 7 19 108.7 81 RF00034
OxyS RNA RF00035 Gene; sRNA; 5 18 106.2 93 RF00035
HIV Rev response element RF00036 Cis-reg; 65 3972 311.9 87 RF00036
Iron response element RF00037 Cis-reg; 39 318 29.0 63 RF00037
PrfA thermoregulator UTR RF00038 Cis-reg; thermoregulator; 11 130 130.2 97 RF00038
DicF RNA RF00039 Gene; antisense; 6 29 52.0 73 RF00039
RNase E 5' UTR element RF00040 Cis-reg; 9 25 336.6 76 RF00040
Enteroviral 3' UTR element RF00041 Cis-reg; 60 96 119.5 87 RF00041
CopA-like RNA RF00042 Gene; antisense; 17 42 90.2 84 RF00042
R1162-like plasmid antisense RNA RF00043 Gene; antisense; 3 9 73.2 67 RF00043
Bacteriophage pRNA RF00044 Gene; 3 5 215.2 76 RF00044
Small nucleolar RNA SNORA73 RF00045 Gene; snRNA; guide; HACA-box; 23 71 207.7 71 RF00045
Small nucleolar RNA R30/Z108 RF00046 Gene; snRNA; guide; CD-box; 6 30 95.6 89 RF00046
mir-2 microRNA precursor RF00047 Gene; miRNA; 9 25 70.1 71 RF00047
Enterovirus cis-acting replication element RF00048 Cis-reg; 56 262 61.0 81 RF00048
Small nucleolar RNA SNORD36 RF00049 Gene; snRNA; guide; CD-box; 20 129 78.5 66 RF00049
FMN riboswitch (RFN element) RF00050 Cis-reg; riboswitch; 34 183 144.7 65 RF00050
mir-17 microRNA precursor family RF00051 Gene; miRNA; 54 63 82.1 69 RF00051
lin-4 microRNA precursor RF00052 Gene; miRNA; 9 39 70.1 73 RF00052
mir-7 microRNA precursor RF00053 Gene; miRNA; 6 29 88.2 73 RF00053
Small nucleolar RNA SNORD25 RF00054 Gene; snRNA; guide; CD-box; 8 39 81.4 65 RF00054
Small nucleolar RNA Z37 RF00055 Gene; snRNA; guide; CD-box; 9 39 90.5 65 RF00055
Small nucleolar RNA SNORA71 RF00056 Gene; snRNA; guide; HACA-box; 15 37 128.6 71 RF00056
RyhB RNA RF00057 Gene; sRNA; 13 41 83.0 72 RF00057
HgcF RNA RF00058 Gene; 3 5 168.6 89 RF00058
TPP riboswitch (THI element) RF00059 Cis-reg; riboswitch; 174 496 109.2 52 RF00059
HgcE RNA RF00060 Gene; 3 5 130.0 81 RF00060
Hepatitis C virus internal ribosome entry site RF00061 Cis-reg; IRES; 821 3632 206.5 90 RF00061
HgcC family RNA RF00062 Gene; 4 38 166.7 60 RF00062
SscA RNA RF00063 Gene; 4 6 96.3 75 RF00063
HgcG RNA RF00064 Gene; 2 6 239.5 76 RF00064
Small nucleolar RNA snoR9 RF00065 Gene; snRNA; guide; CD-box; 3 5 127.8 84 RF00065
U7 small nuclear RNA RF00066 Gene; snRNA; 24 353 49.0 69 RF00066
Small nucleolar RNA SNORD15 RF00067 Gene; snRNA; guide; CD-box; 18 49 113.1 63 RF00067
Small nucleolar RNA SNORD21 RF00068 Gene; snRNA; guide; CD-box; 5 12 89.1 66 RF00068
Small nucleolar RNA SNORD24 RF00069 Gene; snRNA; guide; CD-box; 14 102 81.6 72 RF00069
Small nucleolar RNA SNORD29 RF00070 Gene; snRNA; guide; CD-box; 10 19 75.1 70 RF00070
Small nucleolar RNA SNORD73 RF00071 Gene; snRNA; guide; CD-box; 4 15 68.7 84 RF00071
Small nucleolar RNA SNORA75 RF00072 Gene; snRNA; guide; HACA-box; 6 23 130.4 73 RF00072
mir-156 microRNA precursor RF00073 Gene; miRNA; 10 47 93.5 67 RF00073
mir-29 microRNA precursor RF00074 Gene; miRNA; 10 53 67.9 80 RF00074
mir-166 microRNA precursor RF00075 Gene; miRNA; 30 63 123.2 57 RF00075
mir-181 microRNA precursor RF00076 Gene; miRNA; 4 25 75.3 83 RF00076
SraB RNA RF00077 Gene; sRNA; 3 14 168.6 90 RF00077
SraD RNA RF00078 Gene; sRNA; 3 25 75.5 87 RF00078
SraE/RygA/RygB family RNA RF00079 Gene; sRNA; 4 30 86.9 82 RF00079
yybP-ykoY leader RF00080 Cis-reg; 50 142 124.5 45 RF00080
SraH RNA RF00081 Gene; sRNA; 2 19 108.4 79 RF00081
SraG RNA RF00082 Gene; sRNA; 5 26 173.4 82 RF00082
SraJ RNA RF00083 Gene; sRNA; 4 16 173.9 91 RF00083
CsrC RNA family RF00084 Gene; sRNA; 4 18 254.6 77 RF00084
Small nucleolar RNA SNORD28 RF00085 Gene; snRNA; guide; CD-box; 4 8 77.2 72 RF00085
Small nucleolar RNA SNORD27 RF00086 Gene; snRNA; guide; CD-box; 11 28 77.9 68 RF00086
Small nucleolar RNA SNORD26 RF00087 Gene; snRNA; guide; CD-box; 4 8 74.4 82 RF00087
Small nucleolar RNA SNORD30 RF00088 Gene; snRNA; guide; CD-box; 3 10 70.0 78 RF00088
Small nucleolar RNA SNORD31 RF00089 Gene; snRNA; guide; CD-box; 4 12 69.0 79 RF00089
Small nucleolar RNA SNORA74 RF00090 Gene; snRNA; guide; HACA-box; 3 9 197.8 76 RF00090
Small nucleolar RNA SNORA62 RF00091 Gene; snRNA; guide; HACA-box; 10 26 148.2 71 RF00091
Small nucleolar RNA SNORA63 RF00092 Gene; snRNA; guide; HACA-box; 8 37 126.3 71 RF00092
Small nucleolar RNA SNORD18 RF00093 Gene; snRNA; guide; CD-box; 16 70 76.4 60 RF00093
Hepatitis delta virus ribozyme RF00094 Gene; ribozyme; 15 82 88.8 95 RF00094
Pyrococcus C/D box small nucleolar RNA RF00095 Gene; snRNA; guide; CD-box; 38 58 56.2 59 RF00095
U8 small nucleolar RNA RF00096 Gene; snRNA; guide; CD-box; 6 38 133.8 60 RF00096
Plant small nucleolar RNA R71 RF00097 Gene; snRNA; guide; CD-box; 21 370 106.5 77 RF00097
Snake H/ACA box small nucleolar RNA RF00098 Gene; snRNA; guide; HACA-box; 22 55 140.3 90 RF00098
Small nucleolar RNA SNORD22 RF00099 Gene; snRNA; guide; CD-box; 3 9 125.8 84 RF00099
7SK RNA RF00100 Gene; 6 171 317.0 72 RF00100
SraC/RyeA RNA RF00101 Gene; sRNA; 4 19 242.7 76 RF00101
VA RNA RF00102 Gene; 54 157 158.9 70 RF00102
mir-1 microRNA precursor family RF00103 Gene; miRNA; 7 27 76.7 71 RF00103
mir-10 microRNA precursor family RF00104 Gene; miRNA; 11 73 73.8 67 RF00104
Small nucleolar RNA SNORD115 RF00105 Gene; snRNA; guide; CD-box; 23 133 81.1 90 RF00105
RNAI RF00106 Gene; antisense; 10 138 103.5 71 RF00106
FinP RF00107 Gene; 6 15 77.6 91 RF00107
Small nucleolar RNA SNORD116 RF00108 Gene; snRNA; guide; CD-box; 7 85 92.2 80 RF00108
Vimentin 3' UTR protein-binding region RF00109 Cis-reg; 19 45 66.1 80 RF00109
RybB RNA RF00110 Gene; sRNA; 3 19 79.5 89 RF00110
RyeB RNA RF00111 Gene; sRNA; 4 19 97.3 92 RF00111
RyeE RNA RF00112 Gene; sRNA; 2 22 84.8 80 RF00112
QUAD RNA RF00113 Gene; sRNA; 14 50 146.9 77 RF00113
Ribosomal S15 leader RF00114 Cis-reg; leader; 47 51 117.4 64 RF00114
IS061 RNA RF00115 Gene; sRNA; 6 9 180.4 93 RF00115
C0465 RNA RF00116 Gene; sRNA; 2 10 77.6 100 RF00116
C0719 RNA RF00117 Gene; sRNA; 2 7 210.3 99 RF00117
rydB RNA RF00118 Gene; sRNA; 2 13 67.6 96 RF00118
C0299 RNA RF00119 Gene; sRNA; 2 11 79.0 98 RF00119
C0343 RNA RF00120 Gene; sRNA; 2 14 75.0 87 RF00120
MicC RNA RF00121 Gene; sRNA; 5 15 121.6 86 RF00121
GadY RF00122 Gene; sRNA; 2 8 114.0 100 RF00122
IS102 RNA RF00124 Gene; sRNA; 7 13 202.3 91 RF00124
IS128 RNA RF00125 Gene; sRNA; 2 5 209.0 99 RF00125
ryfA RNA RF00126 Gene; sRNA; 4 13 301.1 85 RF00126
t44 RNA RF00127 Gene; sRNA; 7 27 145.8 72 RF00127
tke1 RNA RF00128 Gene; sRNA; 4 18 153.4 87 RF00128
mir-103/107 microRNA precursor RF00129 Gene; miRNA; 5 29 78.0 85 RF00129
mir-192/215 microRNA precursor RF00130 Gene; miRNA; 4 12 106.0 75 RF00130
mir-30 microRNA precursor RF00131 Gene; miRNA; 4 21 70.8 82 RF00131
Small nucleolar RNA R24 RF00132 Gene; snRNA; guide; CD-box; 12 45 92.4 81 RF00132
Small nucleolar RNA Z195/SNORD33 family RF00133 Gene; snRNA; guide; CD-box; 17 43 85.0 65 RF00133
Small nucleolar RNA Z196/R39/R59 family RF00134 Gene; snRNA; guide; CD-box; 23 43 84.4 64 RF00134
Small nucleolar RNA Z223 RF00135 Gene; snRNA; guide; CD-box; 5 35 90.4 82 RF00135
Small nucleolar RNA SNORD81 RF00136 Gene; snRNA; guide; CD-box; 3 19 76.5 82 RF00136
Small nucleolar RNA SNORD83 RF00137 Gene; snRNA; guide; CD-box; 7 56 76.9 85 RF00137
Small nucleolar RNA SNORD16 RF00138 Gene; snRNA; guide; CD-box; 5 11 98.5 81 RF00138
Small nucleolar RNA SNORA72 RF00139 Gene; snRNA; guide; HACA-box; 7 17 136.5 81 RF00139
Alpha operon ribosome binding site RF00140 Cis-reg; 15 44 109.2 69 RF00140
Small nucleolar RNA Z118/Z121/Z120 RF00142 Gene; snRNA; guide; CD-box; 7 42 103.2 81 RF00142
mir-6 microRNA precursor RF00143 Gene; miRNA; 3 9 77.0 79 RF00143
mir-199 microRNA precursor RF00144 Gene; miRNA; 3 18 99.9 88 RF00144
Small nucleolar RNA Z105 RF00145 Gene; snRNA; guide; CD-box; 5 17 69.0 79 RF00145
Small nucleolar RNA SNORD34 RF00147 Gene; snRNA; guide; CD-box; 9 34 79.4 67 RF00147
Small nucleolar RNA Z103 RF00149 Gene; snRNA; guide; CD-box; 9 42 98.3 78 RF00149
Small nucleolar RNA SNORD42 RF00150 Gene; snRNA; guide; CD-box; 7 14 64.3 76 RF00150
Small nucleolar RNA SNORD58 RF00151 Gene; snRNA; guide; CD-box; 3 20 65.6 81 RF00151
Small nucleolar RNA SNORD79 RF00152 Gene; snRNA; guide; CD-box; 6 9 74.4 83 RF00152
Small nucleolar RNA SNORD62 RF00153 Gene; snRNA; guide; CD-box; 3 8 85.5 94 RF00153
Small nucleolar RNA SNORD63 RF00154 Gene; snRNA; guide; CD-box; 2 3 68.7 90 RF00154
Small nucleolar RNA SNORA66 RF00155 Gene; snRNA; guide; HACA-box; 3 8 132.2 85 RF00155
Small nucleolar RNA SNORA70 RF00156 Gene; snRNA; guide; HACA-box; 13 90 130.7 70 RF00156
Small nucleolar RNA SNORD39 RF00157 Gene; snRNA; guide; CD-box; 4 15 78.3 79 RF00157
Small nucleolar RNA SNORD82 RF00158 Gene; snRNA; guide; CD-box; 3 10 69.8 88 RF00158
Small nucleolar RNA Z168/Z174 RF00159 Gene; snRNA; guide; CD-box; 6 18 82.2 87 RF00159
Small nucleolar RNA Z159/U59 RF00160 Gene; snRNA; guide; CD-box; 10 37 87.7 76 RF00160
Nanos 3' UTR translation control element RF00161 Cis-reg; 3 16 63.1 90 RF00161
SAM riboswitch (S box leader) RF00162 Cis-reg; riboswitch; 48 298 110.8 66 RF00162
Hammerhead ribozyme (type I) RF00163 Gene; ribozyme; 75 62 47.0 69 RF00163
Coronavirus 3' stem-loop II-like motif (s2m) RF00164 Cis-reg; 38 302 43.0 79 RF00164
Coronavirus 3' UTR pseudoknot RF00165 Cis-reg; 14 85 62.5 70 RF00165
PrrB/RsmZ RNA family RF00166 Gene; sRNA; 12 17 157.4 75 RF00166
Purine riboswitch RF00167 Cis-reg; riboswitch; 22 122 102.1 56 RF00167
Lysine riboswitch RF00168 Cis-reg; riboswitch; 43 112 182.2 49 RF00168
Bacterial signal recognition particle RNA RF00169 Gene; 62 285 98.9 50 RF00169
Retron msr RNA RF00170 Gene; 8 12 71.3 58 RF00170
Tombusvirus 5' UTR RF00171 Cis-reg; 9 40 108.1 59 RF00171
ctgf/hcs24 CAESAR RF00172 Cis-reg; 9 41 78.9 83 RF00172
Hairpin ribozyme RF00173 Gene; ribozyme; 3 5 51.2 82 RF00173
Cobalamin riboswitch RF00174 Cis-reg; riboswitch; 128 306 204.5 47 RF00174
Retroviral Psi packaging element RF00175 Cis-reg; 173 1364 105.7 84 RF00175
Tombusvirus 3' UTR region IV RF00176 Cis-reg; 18 77 64.5 94 RF00176
Small subunit ribosomal RNA, 5' domain RF00177 Gene; rRNA; 358 343 487.3 48 RF00177
mir-24 microRNA precursor family RF00178 Gene; miRNA; 3 21 67.7 86 RF00178
GAIT element RF00179 Cis-reg; 8 11 71.1 96 RF00179
Renin stability regulatory element (REN-SRE) RF00180 Cis-reg; 13 30 37.0 90 RF00180
C/D box small nucleolar RNA SNORD113/SNORD114 family RF00181 Gene; snRNA; guide; CD-box; 59 81 75.3 64 RF00181
Coronavirus packaging signal RF00182 Cis-reg; 15 23 129.0 82 RF00182
G-CSF factor stem-loop destabilising element (SLDE) RF00183 Cis-reg; 6 19 94.2 86 RF00183
Potato virus X cis-acting regulatory element RF00184 Cis-reg; 3 21 54.0 97 RF00184
Flavivirus 3' UTR cis-acting replication element (CRE) RF00185 Cis-reg; 84 303 95.4 69 RF00185
Small nucleolar RNA SNORD101 RF00186 Gene; snRNA; guide; CD-box; 3 6 73.2 89 RF00186
Small nucleolar RNA SNORD102 RF00187 Gene; snRNA; guide; CD-box; 2 4 71.8 94 RF00187
Small nucleolar RNA SNORD103 RF00188 Gene; snRNA; guide; CD-box; 3 5 89.8 96 RF00188
Small nucleolar RNA SNORD95 RF00189 Gene; snRNA; guide; CD-box; 5 12 68.3 80 RF00189
U98 small nucleolar RNA RF00190 Gene; snRNA; guide; HACA-box; 3 14 133.3 78 RF00190
Small nucleolar RNA SNORA57 RF00191 Gene; snRNA; guide; HACA-box; 3 10 145.1 83 RF00191
Bovine leukaemia virus RNA packaging signal RF00192 Cis-reg; 5 5 55.0 97 RF00192
Citrus tristeza virus replication signal RF00193 Cis-reg; 9 24 258.2 91 RF00193
Rubella virus 3' cis-acting element RF00194 Cis-reg; 25 93 63.2 97 RF00194
RsmY RNA family RF00195 Gene; sRNA; 4 9 121.4 84 RF00195
Alfalfa mosaic virus RNA 1 5' UTR stem-loop RF00196 Cis-reg; 4 8 35.0 96 RF00196
rbcL 5' UTR RNA stabilising element RF00197 Cis-reg; 3 25 45.6 67 RF00197
SL1 RNA RF00198 Gene; 32 98 103.4 73 RF00198
SL2 RNA RF00199 Gene; 32 37 109.0 73 RF00199
Small nucleolar RNA Z199 RF00200 Gene; snRNA; guide; CD-box; 17 38 83.1 79 RF00200
Small nucleolar RNA Z278 RF00201 Gene; snRNA; guide; CD-box; 7 19 114.7 94 RF00201
Small nucleolar RNA R66 RF00202 Gene; snRNA; guide; CD-box; 6 35 73.2 89 RF00202
Small nucleolar RNA R160 RF00203 Gene; snRNA; guide; CD-box; 9 21 78.4 76 RF00203
Small nucleolar RNA R12 RF00204 Gene; snRNA; guide; CD-box; 9 66 80.8 82 RF00204
Small nucleolar RNA R41 RF00205 Gene; snRNA; guide; CD-box; 7 15 95.4 85 RF00205
Small nucleolar RNA SNORD54 RF00206 Gene; snRNA; guide; CD-box; 22 45 80.2 70 RF00206
K10 transport/localisation element (TLS) RF00207 Cis-reg; 3 6 44.0 100 RF00207
Small nucleolar RNA R72 RF00208 Gene; snRNA; guide; CD-box; 4 10 87.0 98 RF00208
Pestivirus internal ribosome entry site (IRES) RF00209 Cis-reg; IRES; 25 997 249.1 80 RF00209
Aphthovirus internal ribosome entry site (IRES) RF00210 Cis-reg; IRES; 92 188 461.5 73 RF00210
Small nucleolar RNA SNORD35 RF00211 Gene; snRNA; guide; CD-box; 8 17 88.1 76 RF00211
Small nucleolar RNA SNORD38 RF00212 Gene; snRNA; guide; CD-box; 7 23 69.0 76 RF00212
Small nucleolar RNA R38 RF00213 Gene; snRNA; guide; CD-box; 19 50 84.4 58 RF00213
Retrovirus direct repeat 1 (dr1) RF00214 Cis-reg; 26 124 89.2 86 RF00214
Tombus virus defective interfering (DI) RNA region 3 RF00215 Cis-reg; 28 66 69.6 79 RF00215
c-myc internal ribosome entry site (IRES) RF00216 Cis-reg; IRES; 23 54 296.5 79 RF00216
Small nucleolar RNA SNORD20 RF00217 Gene; snRNA; guide; CD-box; 4 6 80.2 100 RF00217
Small nucleolar RNA SNORD46 RF00218 Gene; snRNA; guide; CD-box; 9 27 87.9 70 RF00218
Small nucleolar RNA SNORD32 RF00219 Gene; snRNA; guide; CD-box; 4 21 82.0 90 RF00219
Human rhinovirus internal cis-acting regulatory element (CRE) RF00220 Cis-reg; 12 60 85.5 72 RF00220
Small nucleolar RNA SNORD43 RF00221 Gene; snRNA; guide; CD-box; 7 19 85.7 61 RF00221
Bag-1 internal ribosome entry site (IRES) RF00222 Cis-reg; IRES; 4 15 349.8 86 RF00222
bip internal ribosome entry site (IRES) RF00223 Cis-reg; IRES; 4 10 236.4 74 RF00223
FGF-2 internal ribosome entry site (IRES) RF00224 Cis-reg; IRES; 3 9 435.2 95 RF00224
Tobamovirus internal ribosome entry site (IRES) RF00225 Cis-reg; IRES; 7 11 152.1 86 RF00225
n-myc internal ribosome entry site (IRES) RF00226 Cis-reg; IRES; 6 29 269.7 57 RF00226
FIE3 (ftz instability element 3') element RF00227 Cis-reg; 5 10 65.0 77 RF00227
Hepatitis A virus internal ribosome entry site (IRES) RF00228 Cis-reg; IRES; 23 137 389.0 95 RF00228
Picornavirus internal ribosome entry site (IRES) RF00229 Cis-reg; IRES; 208 1512 205.1 80 RF00229
T-box leader RF00230 Cis-reg; 103 716 226.8 46 RF00230
Small Cajal body specific RNA 13 RF00231 Gene; snRNA; guide; scaRNA; 3 7 273.4 86 RF00231
Spi-1 (PU.1) 5' UTR regulatory element RF00232 Cis-reg; 5 10 165.2 89 RF00232
Tymovirus/Pomovirus tRNA-like 3' UTR element RF00233 Cis-reg; 28 82 78.5 64 RF00233
glmS glucosamine-6-phosphate activated ribozyme RF00234 Cis-reg; riboswitch; 11 44 186.5 60 RF00234
Plasmid RNAIII RF00235 Gene; 7 9 130.0 95 RF00235
ctRNA RF00236 Gene; antisense; 15 21 78.6 72 RF00236
mir-9/mir-79 microRNA precursor family RF00237 Gene; miRNA; 5 34 61.3 85 RF00237
ctRNA RF00238 Gene; antisense; 48 52 85.3 71 RF00238
mir-124 microRNA precursor family RF00239 Gene; miRNA; 6 25 80.6 85 RF00239
RNA-OUT RF00240 Gene; 4 172 70.0 96 RF00240
mir-8/mir-141/mir-200 microRNA precursor family RF00241 Gene; miRNA; 9 24 77.2 64 RF00241
ctRNA RF00242 Gene; antisense; 16 21 95.0 77 RF00242
traJ 5' UTR RF00243 Cis-reg; 6 15 108.8 88 RF00243
mir-26 microRNA precursor family RF00244 Gene; miRNA; 5 24 73.5 80 RF00244
mir-19 microRNA precursor family RF00245 Gene; miRNA; 3 43 75.4 82 RF00245
mir-135 microRNA precursor family RF00246 Gene; miRNA; 5 22 90.2 75 RF00246
mir-160 microRNA precursor family RF00247 Gene; miRNA; 7 33 94.5 65 RF00247
mir-148/mir-152 microRNA precursor family RF00248 Gene; miRNA; 5 9 86.2 71 RF00248
mir-46/mir-47/mir-281 microRNA precursor family RF00249 Gene; miRNA; 4 8 76.0 78 RF00249
Trans-activation response element (TAR) RF00250 Cis-reg; 426 2004 56.7 91 RF00250
mir-219 microRNA precursor family RF00251 Gene; miRNA; 7 31 72.3 79 RF00251
Alfalfa mosaic virus coat protein binding (CPB) RNA RF00252 Cis-reg; 18 23 159.4 90 RF00252
mir-101 microRNA precursor family RF00253 Gene; miRNA; 4 20 75.0 89 RF00253
mir-16 microRNA precursor family RF00254 Gene; miRNA; 12 37 80.4 76 RF00254
mir-218 microRNA precursor family RF00255 Gene; miRNA; 3 23 96.1 80 RF00255
mir-196 microRNA precursor family RF00256 Gene; miRNA; 14 45 91.1 73 RF00256
mir-194 microRNA precursor family RF00257 Gene; miRNA; 4 13 85.0 79 RF00257
mir-130 microRNA precursor family RF00258 Gene; miRNA; 3 15 82.5 72 RF00258
Interferon gamma 5' UTR regulatory element RF00259 Cis-reg; 5 13 160.2 85 RF00259
Hepatitis C virus (HCV) cis-acting replication element (CRE) RF00260 Cis-reg; 52 348 51.0 87 RF00260
L-myc internal ribosome entry site (IRES) RF00261 Cis-reg; IRES; 3 5 220.2 94 RF00261
sar RNA RF00262 Gene; antisense; 4 7 65.9 87 RF00262
Small nucleolar RNA SNORA68 RF00263 Gene; snRNA; guide; HACA-box; 4 12 127.4 76 RF00263
Small nucleolar RNA SNORA64/SNORA10 family RF00264 Gene; snRNA; guide; HACA-box; 9 17 132.4 70 RF00264
Small nucleolar RNA SNORA69 RF00265 Gene; snRNA; guide; HACA-box; 3 9 132.1 76 RF00265
Small nucleolar RNA Z17 RF00266 Gene; snRNA; guide; CD-box; 4 8 71.8 79 RF00266
Small nucleolar RNA R64/Z200 family RF00267 Gene; snRNA; guide; CD-box; 11 24 94.2 70 RF00267
Small nucleolar RNA snoZ7/snoR77 RF00268 Gene; snRNA; guide; CD-box; 3 9 80.2 82 RF00268
Small nucleolar RNA SNORD61 RF00270 Gene; snRNA; guide; CD-box; 3 6 71.3 87 RF00270
Small nucleolar RNA SNORD60 RF00271 Gene; snRNA; guide; CD-box; 3 9 81.7 87 RF00271
Small nucleolar RNA SNORA67 RF00272 Gene; snRNA; guide; HACA-box; 10 21 139.9 73 RF00272
Small nucleolar RNA SNORD59 RF00273 Gene; snRNA; guide; CD-box; 4 11 72.1 83 RF00273
Small nucleolar RNA SNORD57 RF00274 Gene; snRNA; guide; CD-box; 3 5 69.6 88 RF00274
Small nucleolar RNA SNORD56 RF00275 Gene; snRNA; guide; CD-box; 7 14 70.8 84 RF00275
Small nucleolar RNA SNORD52 RF00276 Gene; snRNA; guide; CD-box; 4 19 66.4 80 RF00276
Small nucleolar RNA SNORD49 RF00277 Gene; snRNA; guide; CD-box; 4 10 68.6 73 RF00277
Small nucleolar RNA SNORD50 RF00278 Gene; snRNA; guide; CD-box; 6 12 70.8 83 RF00278
Small nucleolar RNA SNORD45 RF00279 Gene; snRNA; guide; CD-box; 11 18 75.7 80 RF00279
Small nucleolar RNA SNORD51 RF00280 Gene; snRNA; guide; CD-box; 3 4 75.0 88 RF00280
Small nucleolar RNA SNORD47 RF00281 Gene; snRNA; guide; CD-box; 3 11 74.9 88 RF00281
Small nucleolar RNA SNORD48 RF00282 Gene; snRNA; guide; CD-box; 3 13 63.2 92 RF00282
small Cajal body-specific RNA 18 RF00283 Gene; snRNA; guide; scaRNA; 4 18 80.3 86 RF00283
Z18 small nucleolar RNA RF00284 Gene; snRNA; guide; CD-box; 4 19 76.2 76 RF00284
Z6 small nucleolar RNA RF00285 Gene; snRNA; guide; CD-box; 3 18 86.0 77 RF00285
Small Cajal body specific RNA 8 RF00286 Gene; snRNA; guide; scaRNA; 3 5 128.4 81 RF00286
Small nucleolar RNA SNORD44 RF00287 Gene; snRNA; guide; CD-box; 3 5 60.6 92 RF00287
Z30 small nucleolar RNA RF00288 Gene; snRNA; guide; CD-box; 4 12 97.4 83 RF00288
Z12 small nucleolar RNA RF00289 Gene; snRNA; guide; CD-box; 3 5 70.0 87 RF00289
Bamboo mosaic potexvirus (BaMV) cis-regulatory element RF00290 Cis-reg; 4 14 140.0 100 RF00290
Small nucleolar RNA snoR639/H1 RF00291 Gene; snRNA; guide; HACA-box; 3 6 138.0 100 RF00291
Small nucleolar RNA TBR5 RF00292 Gene; snRNA; guide; CD-box; 3 5 90.0 80 RF00292
Small nucleolar RNA snoM1 RF00293 Gene; snRNA; guide; HACA-box; 3 8 99.6 91 RF00293
Small nucleolar RNA TBR17 RF00294 Gene; snRNA; guide; CD-box; 5 8 270.5 74 RF00294
Small nucleolar RNA TBR7 RF00295 Gene; snRNA; guide; CD-box; 6 9 74.8 80 RF00295
Small nucleolar RNA R16 RF00296 Gene; snRNA; guide; CD-box; 17 18 84.8 77 RF00296
Small nucleolar RNA Z221 RF00300 Gene; snRNA; guide; CD-box; 3 7 112.4 96 RF00300
Small nucleolar RNA Z256 RF00301 Gene; snRNA; guide; CD-box; 5 10 94.4 75 RF00301
Small nucleolar RNA SNORA65 RF00302 Gene; snRNA; guide; HACA-box; 8 9 123.9 81 RF00302
Small nucleolar RNA snoR86 RF00303 Gene; snRNA; guide; HACA-box; 3 3 125.3 87 RF00303
Small nucleolar RNA Z279 RF00304 Gene; snRNA; guide; CD-box; 3 7 111.1 94 RF00304
Small nucleolar RNA Z248 RF00305 Gene; snRNA; guide; CD-box; 4 10 137.0 98 RF00305
Small nucleolar RNA Z178 RF00306 Gene; snRNA; guide; CD-box; 4 6 152.0 100 RF00306
Small nucleolar RNA snoR98 RF00307 Gene; snRNA; guide; HACA-box; 4 5 110.4 87 RF00307
Small nucleolar RNA snR60/Z15/Z230/Z193/J17 RF00309 Gene; snRNA; guide; CD-box; 23 43 93.4 64 RF00309
Small nucleolar RNA Z165 RF00310 Gene; snRNA; guide; CD-box; 3 8 90.9 95 RF00310
Small nucleolar RNA Z188 RF00311 Gene; snRNA; guide; CD-box; 7 20 119.7 78 RF00311
Small nucleolar RNA Z206 RF00312 Gene; snRNA; guide; CD-box; 3 12 130.3 89 RF00312
Small nucleolar RNA Z173 RF00313 Gene; snRNA; guide; CD-box; 3 5 106.6 100 RF00313
Small nucleolar RNA Z182 RF00314 Gene; snRNA; guide; CD-box; 4 9 88.7 96 RF00314
Small nucleolar RNA J33 RF00315 Gene; snRNA; guide; CD-box; 3 24 80.9 67 RF00315
Small nucleolar RNA R43 RF00316 Gene; snRNA; guide; CD-box; 16 20 73.1 83 RF00316
Small nucleolar RNA Z163/Z177 family RF00317 Gene; snRNA; guide; CD-box; 7 15 88.5 85 RF00317
Small nucleolar RNA Z175 RF00318 Gene; snRNA; guide; CD-box; 3 5 81.0 99 RF00318
Small nucleolar RNA MBI-1 RF00319 Gene; snRNA; guide; HACA-box; 5 7 182.4 83 RF00319
Small nucleolar RNA Z185 RF00320 Gene; snRNA; guide; CD-box; 2 8 84.2 92 RF00320
Small nucleolar RNA Z247 RF00321 Gene; snRNA; guide; CD-box; 8 32 137.3 71 RF00321
Small nucleolar RNA MBI-161 RF00322 Gene; snRNA; guide; HACA-box; 5 8 127.1 88 RF00322
Small nucleolar RNA R79 RF00323 Gene; snRNA; guide; CD-box; 4 9 63.1 96 RF00323
Small nucleolar RNA MBII-202 RF00324 Gene; snRNA; guide; CD-box; 5 11 78.0 80 RF00324
Small nucleolar RNA SNORD53 RF00325 Gene; snRNA; guide; CD-box; 3 8 76.2 82 RF00325
Small nucleolar RNA Z155 RF00326 Gene; snRNA; guide; CD-box; 8 14 78.0 81 RF00326
Small nucleolar RNA Z194 RF00327 Gene; snRNA; guide; CD-box; 3 7 106.3 99 RF00327
Small nucleolar RNA Z161/Z228 RF00328 Gene; snRNA; guide; CD-box; 7 15 92.2 82 RF00328
Small nucleolar RNA Z162 RF00329 Gene; snRNA; guide; CD-box; 3 7 88.1 90 RF00329
Small nucleolar RNA Z43 RF00330 Gene; snRNA; guide; CD-box; 4 13 99.2 82 RF00330
Small nucleolar RNA Z169 RF00331 Gene; snRNA; guide; CD-box; 3 8 66.8 90 RF00331
Small nucleolar RNA Z266 RF00332 Gene; snRNA; guide; CD-box; 4 22 87.0 81 RF00332
Small nucleolar RNA Z157/R69/R10 RF00333 Gene; snRNA; guide; CD-box; 10 26 97.4 73 RF00333
Small nucleolar RNA MBI-28 RF00334 Gene; snRNA; guide; HACA-box; 3 18 115.6 77 RF00334
Small nucleolar RNA Z13/snr52 RF00335 Gene; snRNA; guide; CD-box; 4 10 95.9 74 RF00335
Small nucleolar RNA J26 RF00336 Gene; snRNA; guide; CD-box; 5 18 146.4 91 RF00336
Small nucleolar RNA Z112 RF00337 Gene; snRNA; guide; CD-box; 3 29 182.7 92 RF00337
Small nucleolar RNA snR53 RF00338 Gene; snRNA; guide; CD-box; 3 3 89.7 94 RF00338
Small nucleolar RNA snoR60 RF00339 Gene; snRNA; guide; CD-box; 3 26 73.8 84 RF00339
Small nucleolar RNA snoMBI-87 RF00340 Gene; snRNA; guide; HACA-box; 6 25 131.4 79 RF00340
Small nucleolar RNA Z39 RF00341 Gene; snRNA; guide; CD-box; 5 8 61.6 88 RF00341
Small nucleolar RNA Z40 RF00342 Gene; snRNA; guide; CD-box; 5 11 73.0 89 RF00342
Small nucleolar RNA Z122 RF00343 Gene; snRNA; guide; CD-box; 3 16 84.9 75 RF00343
Small nucleolar RNA Z267 RF00344 Gene; snRNA; guide; CD-box; 5 12 73.1 78 RF00344
Small nucleolar RNA snoR1 RF00345 Gene; snRNA; guide; CD-box; 7 20 95.1 80 RF00345
Small nucleolar RNA Z50 RF00347 Gene; snRNA; guide; CD-box; 3 4 65.8 93 RF00347
Small nucleolar RNA snoR9 RF00348 Gene; snRNA; guide; CD-box; 7 32 126.0 76 RF00348
Small nucleolar RNA R11/Z151 RF00349 Gene; snRNA; guide; CD-box; 5 19 91.9 84 RF00349
Small nucleolar RNA Z152/R70/R12/ RF00350 Gene; snRNA; guide; CD-box; 4 12 98.8 80 RF00350
Small nucleolar RNA R20 RF00351 Gene; snRNA; guide; CD-box; 3 4 91.0 93 RF00351
Small nucleolar RNA R21 RF00352 Gene; snRNA; guide; CD-box; 4 8 82.0 88 RF00352
Small nucleolar RNA snoR31/Z110/Z27 RF00353 Gene; snRNA; guide; CD-box; 8 35 95.3 87 RF00353
Small nucleolar RNA snoR28 RF00355 Gene; snRNA; guide; CD-box; 4 11 74.0 94 RF00355
Small nucleolar RNA R32/R81/Z41 RF00356 Gene; snRNA; guide; CD-box; 6 8 95.6 84 RF00356
Small nucleolar RNA R44/J54/Z268 family RF00357 Gene; snRNA; guide; CD-box; 19 39 97.6 70 RF00357
Small nucleolar RNA Z101 RF00358 Gene; snRNA; guide; CD-box; 3 18 94.4 71 RF00358
Small nucleolar RNA Z102/R77 RF00359 Gene; snRNA; guide; CD-box; 4 11 86.5 89 RF00359
Small nucleolar RNA Z107/R87 RF00360 Gene; snRNA; guide; CD-box; 6 38 112.8 81 RF00360
Small nucleolar RNA Z119 RF00361 Gene; snRNA; guide; CD-box; 3 12 97.2 94 RF00361
Pospiviroid RY motif stem loop RF00362 Cis-reg; 16 175 77.8 89 RF00362
mir-BART1 microRNA precursor family RF00363 Gene; miRNA; 3 4 70.0 93 RF00363
mir-BART2 microRNA precursor family RF00364 Gene; miRNA; 8 14 60.4 93 RF00364
mir-BHRF1-1 microRNA precursor family RF00365 Gene; miRNA; 3 6 66.0 97 RF00365
mir-BHRF1-2 microRNA precursor family RF00366 Gene; miRNA; 4 9 65.0 90 RF00366
mir-BHRF1-3 microRNA precursor family RF00367 Gene; miRNA; 3 6 65.0 100 RF00367
sroB RNA RF00368 Gene; sRNA; 4 17 81.6 86 RF00368
sroC RNA RF00369 Gene; sRNA; 4 14 162.2 86 RF00369
sroD RNA RF00370 Gene; sRNA; 3 17 86.8 96 RF00370
sroE RNA RF00371 Gene; sRNA; 3 14 89.7 94 RF00371
sroH RNA RF00372 Gene; sRNA; 4 7 160.9 100 RF00372
Archaeal RNase P RF00373 Gene; ribozyme; 34 97 263.1 64 RF00373
Gammaretrovirus core encapsidation signal RF00374 Cis-reg; 23 141 101.0 93 RF00374
HIV primer binding site (PBS) RF00375 Cis-reg; 388 1609 94.8 79 RF00375
HIV gag stem loop 3 (GSL3) RF00376 Cis-reg; 1403 6923 81.1 87 RF00376
Small nucleolar RNA U6-53/MBII-28 RF00377 Gene; snRNA; guide; CD-box; 4 8 106.9 83 RF00377
Qrr RNA RF00378 Gene; sRNA; 6 25 103.0 79 RF00378
ydaO/yuaA leader RF00379 Cis-reg; 25 80 155.4 55 RF00379
ykoK leader RF00380 Cis-reg; 36 57 168.1 61 RF00380
Antizyme RNA frameshifting stimulation element RF00381 Cis-reg; frameshift_element; 13 53 57.6 87 RF00381
DnaX ribosomal frameshifting element RF00382 Cis-reg; frameshift_element; 3 20 65.0 85 RF00382
Insertion sequence IS1222 ribosomal frameshifting element RF00383 Cis-reg; frameshift_element; 6 13 117.8 95 RF00383
Poxvirus AX element late mRNA cis-regulatory element RF00384 Cis-reg; 7 22 62.0 96 RF00384
Infectious bronchitis virus D-RNA RF00385 Cis-reg; 10 41 41.8 96 RF00385
Enterovirus 5' cloverleaf cis-acting replication element RF00386 Cis-reg; 160 287 88.1 84 RF00386
FGF-1 internal ribosome entry site (IRES) RF00387 Cis-reg; IRES; 6 10 166.9 84 RF00387
Qa RNA RF00388 Gene; antisense; 5 7 103.7 73 RF00388
Bamboo mosaic virus satellite RNA cis-regulatory element RF00389 Cis-reg; 42 74 157.6 94 RF00389
UPSK RNA RF00390 Cis-reg; 4 25 23.0 97 RF00390
RtT RNA RF00391 Cis-reg; 16 91 169.4 67 RF00391
Small nucleolar RNA SNORA5 RF00392 Gene; snRNA; guide; HACA-box; 6 12 131.1 74 RF00392
Small nucleolar RNA SNORA8 RF00393 Gene; snRNA; guide; HACA-box; 5 14 135.1 85 RF00393
Small nucleolar RNA SNORA4 RF00394 Gene; snRNA; guide; HACA-box; 7 13 138.9 76 RF00394
Small nucleolar RNA SNORA13 RF00396 Gene; snRNA; guide; HACA-box; 3 8 132.5 87 RF00396
Small nucleolar RNA SNORA14 RF00397 Gene; snRNA; guide; HACA-box; 3 6 134.7 92 RF00397
Small nucleolar RNA SNORA15 RF00398 Gene; snRNA; guide; HACA-box; 4 9 128.2 84 RF00398
Small nucleolar RNA SNORA24 RF00399 Gene; snRNA; guide; HACA-box; 5 17 125.5 74 RF00399
Small nucleolar RNA SNORA28 RF00400 Gene; snRNA; guide; HACA-box; 3 3 124.7 95 RF00400
Small nucleolar RNA SNORA20 RF00401 Gene; snRNA; guide; HACA-box; 17 34 128.7 88 RF00401
Small nucleolar RNA SNORA25 RF00402 Gene; snRNA; guide; HACA-box; 9 29 128.1 74 RF00402
Small nucleolar RNA SNORA41 RF00403 Gene; snRNA; guide; HACA-box; 6 8 129.0 88 RF00403
Small nucleolar RNA SNORA46 RF00404 Gene; snRNA; guide; HACA-box; 3 8 125.4 81 RF00404
Small nucleolar RNA SNORA44 RF00405 Gene; snRNA; guide; HACA-box; 6 17 127.5 81 RF00405
Small nucleolar RNA SNORA42 RF00406 Gene; snRNA; guide; HACA-box; 4 44 131.1 79 RF00406
Small nucleolar RNA SNORA50 RF00407 Gene; snRNA; guide; HACA-box; 3 4 135.5 98 RF00407
Small nucleolar RNA SNORA1 RF00408 Gene; snRNA; guide; HACA-box; 6 11 132.8 87 RF00408
Small nucleolar RNA SNORA7 RF00409 Gene; snRNA; guide; HACA-box; 8 45 137.8 69 RF00409
Small nucleolar RNA SNORA2 RF00410 Gene; snRNA; guide; HACA-box; 18 27 134.0 72 RF00410
Small nucleolar RNA SNORA9 RF00411 Gene; snRNA; guide; HACA-box; 6 14 130.4 87 RF00411
Small nucleolar RNA SNORA21 RF00412 Gene; snRNA; guide; HACA-box; 5 13 133.5 86 RF00412
Small nucleolar RNA SNORA19 RF00413 Gene; snRNA; guide; HACA-box; 4 9 121.3 91 RF00413
Small nucleolar RNA SNORA22 RF00414 Gene; snRNA; guide; HACA-box; 5 6 135.0 91 RF00414
Small nucleolar RNA SNORA30 RF00415 Gene; snRNA; guide; HACA-box; 11 14 129.1 70 RF00415
Small nucleolar RNA SNORA43 RF00416 Gene; snRNA; guide; HACA-box; 7 20 135.1 71 RF00416
Small nucleolar RNA SNORA56 RF00417 Gene; snRNA; guide; HACA-box; 4 7 129.9 97 RF00417
Small nucleolar RNA SNORA58 RF00418 Gene; snRNA; guide; HACA-box; 4 7 134.9 85 RF00418
Small nucleolar RNA SNORA52 RF00419 Gene; snRNA; guide; HACA-box; 4 9 135.1 74 RF00419
Small nucleolar RNA SNORA61 RF00420 Gene; snRNA; guide; HACA-box; 4 15 128.7 77 RF00420
Small nucleolar RNA SNORA32 RF00421 Gene; snRNA; guide; HACA-box; 9 33 116.7 78 RF00421
Small Cajal body specific RNA 24 RF00422 Gene; snRNA; guide; scaRNA; 3 7 133.1 84 RF00422
Small Cajal body specific RNA 4 RF00423 Gene; snRNA; guide; scaRNA; 3 12 127.2 88 RF00423
Small Cajal body specific RNA 16 RF00424 Gene; snRNA; guide; scaRNA; 6 9 182.8 80 RF00424
Small nucleolar RNA SNORA18 RF00425 Gene; snRNA; guide; HACA-box; 6 19 126.4 79 RF00425
Small Cajal body specific RNA 15 RF00426 Gene; snRNA; guide; scaRNA; 3 8 124.2 96 RF00426
Small Cajal body specific RNA 23 RF00427 Gene; snRNA; guide; scaRNA; 3 4 126.0 92 RF00427
Small nucleolar RNA SNORA38 RF00428 Gene; snRNA; guide; HACA-box; 5 26 132.2 84 RF00428
Small nucleolar RNA SNORA29 RF00429 Gene; snRNA; guide; HACA-box; 3 10 137.3 82 RF00429
Small nucleolar RNA SNORA54 RF00430 Gene; snRNA; guide; HACA-box; 5 10 126.0 72 RF00430
Small nucleolar RNA SNORA55 RF00431 Gene; snRNA; guide; HACA-box; 3 14 126.6 84 RF00431
Small nucleolar RNA SNORA51 RF00432 Gene; snRNA; guide; HACA-box; 9 35 131.7 74 RF00432
Hsp90 cis-regulatory element RF00433 Cis-reg; thermoregulator; 4 7 152.0 98 RF00433
Luteovirus cap-independent translation element (BTE) RF00434 Cis-reg; 17 32 101.2 73 RF00434
Repression of heat shock gene expression (ROSE) element RF00435 Cis-reg; thermoregulator; 13 20 94.3 65 RF00435
UnaL2 LINE 3' element RF00436 Cis-reg; 30 5255 54.0 78 RF00436
Hairy RNA localisation element (HLE) RF00437 Cis-reg; 4 20 130.5 89 RF00437
Small nucleolar RNA SNORA33 RF00438 Gene; snRNA; guide; HACA-box; 5 11 125.8 77 RF00438
Small nucleolar RNA SNORD87 RF00439 Gene; snRNA; guide; CD-box; 4 7 81.9 93 RF00439
Small nucleolar RNA SNORD37 RF00440 Gene; snRNA; guide; CD-box; 7 11 64.5 78 RF00440
Small nucleolar RNA Z242 RF00441 Gene; snRNA; guide; CD-box; 4 11 191.1 82 RF00441
ykkC-yxkD leader RF00442 Cis-reg; 11 35 106.5 62 RF00442
Small nucleolar RNA SNORA27 RF00443 Gene; snRNA; guide; HACA-box; 3 11 127.9 87 RF00443
PrrF RNA RF00444 Gene; sRNA; 5 14 148.4 84 RF00444
mir-399 microRNA precursor family RF00445 Gene; miRNA; 13 41 113.7 57 RF00445
mir-133 microRNA precursor family RF00446 Gene; miRNA; 9 27 88.9 82 RF00446
Voltage-gated potassium-channel Kv1.4 IRES RF00447 Cis-reg; IRES; 6 9 255.8 90 RF00447
Epstein-Barr virus nuclear antigen (EBNA) IRES RF00448 Cis-reg; IRES; 9 14 214.9 66 RF00448
HIF-1 alpha IRES RF00449 Cis-reg; IRES; 7 12 270.8 84 RF00449
Small nucleolar RNA R105/R108 RF00450 Gene; snRNA; guide; CD-box; 7 7 103.3 77 RF00450
mir-395 microRNA precursor family RF00451 Gene; miRNA; 21 107 99.7 64 RF00451
mir-172 microRNA precursor family RF00452 Gene; miRNA; 8 19 113.5 65 RF00452
Cardiovirus cis-acting replication element (CRE) RF00453 Cis-reg; 12 30 33.0 85 RF00453
p27 cis-regulatory element RF00454 Cis-reg; 4 9 58.3 92 RF00454
mir-15 microRNA precursor family RF00455 Gene; miRNA; 4 29 85.4 80 RF00455
mir-34 microRNA precursor family RF00456 Gene; miRNA; 18 20 87.2 70 RF00456
Mnt IRES RF00457 Cis-reg; IRES; 4 7 203.1 97 RF00457
Cripavirus internal ribosome entry site (IRES) RF00458 Cis-reg; IRES; 7 8 198.8 56 RF00458
Mason-Pfizer monkey virus packaging signal RF00459 Cis-reg; 4 14 274.5 80 RF00459
U1A polyadenylation inhibition element (PIE) RF00460 Cis-reg; 8 27 74.0 80 RF00460
Vascular endothelial growth factor (VEGF) IRES A RF00461 Cis-reg; IRES; 7 13 305.5 92 RF00461
APC internal ribosome entry site (IRES) RF00462 Cis-reg; IRES; 6 8 53.0 85 RF00462
Apolipoprotein B (apoB) 5' UTR cis-regulatory element RF00463 Cis-reg; 3 12 118.9 94 RF00463
mir-92 microRNA precursor family RF00464 Gene; miRNA; 33 45 79.2 62 RF00464
Japanese encephalitis virus (JEV) hairpin structure RF00465 Cis-reg; 20 213 59.5 84 RF00465
Rous sarcoma virus (RSV) primer binding site (PBS) RF00467 Cis-reg; 23 101 72.6 83 RF00467
Hepatitis C virus stem-loop VII RF00468 Cis-reg; 110 497 65.0 78 RF00468
Hepatitis C stem-loop IV RF00469 Cis-reg; 110 344 37.0 89 RF00469
Togavirus 5' plus strand cis-regulatory element RF00470 Cis-reg; 33 78 255.3 72 RF00470
Small nucleolar RNA snR48 RF00471 Gene; snRNA; guide; CD-box; 6 8 109.4 78 RF00471
Small nucleolar RNA snR55/Z10 RF00472 Gene; snRNA; guide; CD-box; 6 9 88.4 74 RF00472
Small nucleolar RNA snR54 RF00473 Gene; snRNA; guide; CD-box; 9 16 81.8 76 RF00473
Small nucleolar RNA snR57 RF00474 Gene; snRNA; guide; CD-box; 6 8 91.6 75 RF00474
Small nucleolar RNA snR69 RF00475 Gene; snRNA; guide; CD-box; 7 14 95.6 61 RF00475
Small nucleolar RNA snR61/Z1/Z11 RF00476 Gene; snRNA; guide; CD-box; 17 20 82.3 69 RF00476
Small nucleolar RNA snR66 RF00477 Gene; snRNA; guide; CD-box; 5 9 100.7 82 RF00477
Small Cajal body specific RNA 6 RF00478 Gene; snRNA; guide; scaRNA; 4 9 265.7 63 RF00478
Small nucleolar RNA snR71 RF00479 Gene; snRNA; guide; CD-box; 7 7 92.4 73 RF00479
HIV Ribosomal frameshift signal RF00480 Cis-reg; frameshift_element; 853 4437 51.9 90 RF00480
Hepatitis C virus 3'X element RF00481 Cis-reg; 22 77 100.0 97 RF00481
Small nucleolar RNA F1/F2/snoR5a RF00482 Gene; snRNA; guide; HACA-box; 8 19 136.3 85 RF00482
Insulin-like growth factor II IRES RF00483 Cis-reg; IRES; 9 36 118.4 95 RF00483
Connexin-32 internal ribosome entry site (IRES) RF00484 Cis-reg; IRES; 6 11 147.5 93 RF00484
Potassium channel RNA editing signal RF00485 Cis-reg; 85 364 113.7 65 RF00485
mir-129 microRNA precursor family RF00486 Gene; miRNA; 6 10 91.1 82 RF00486
Connexin-43 internal ribosome entry site (IRES) RF00487 Cis-reg; IRES; 14 30 195.6 79 RF00487
Yeast U1 spliceosomal RNA RF00488 Gene; snRNA; splicing; 5 9 553.2 61 RF00488
ctRNA RF00489 Gene; antisense; 14 33 76.6 67 RF00489
S-element RF00490 Cis-reg; 12 24 68.0 77 RF00490
Simian virus 40 late polyadenylation signal (SVLPA) RF00491 Cis-reg; 6 38 54.4 99 RF00491
small Cajal body-specific RNA 17 RF00492 Gene; snRNA; guide; scaRNA; 6 16 141.8 81 RF00492
Small nucleolar RNA U2-30 RF00493 Gene; snRNA; guide; CD-box; 3 7 69.3 86 RF00493
Small nucleolar RNA U2-19 RF00494 Gene; snRNA; guide; CD-box; 4 7 78.9 87 RF00494
Heat shock protein 70 (Hsp70) internal ribosome entry site (IRES) RF00495 Cis-reg; IRES; 14 38 209.7 81 RF00495
Coronavirus SL-III cis-acting replication element (CRE) RF00496 Cis-reg; 5 13 42.0 96 RF00496
Equine arteritis virus leader TRS hairpin (LTH) RF00498 Cis-reg; 4 12 45.0 99 RF00498
Human parechovirus 1 (HPeV1) cis regulatory element (CRE) RF00499 Cis-reg; 5 6 112.8 86 RF00499
Turnip crinkle virus (TCV) repressor of minus strand synthesis H5 RF00500 Cis-reg; 3 5 45.2 97 RF00500
Rotavirus cis-acting replication element (CRE) RF00501 Cis-reg; 14 17 67.8 86 RF00501
Turnip crinkle virus (TCV) core promoter hairpin (Pr) RF00502 Cis-reg; 4 5 52.2 95 RF00502
RNAIII RF00503 Gene; 12 16 506.6 86 RF00503
Glycine riboswitch RF00504 Cis-reg; riboswitch; 93 217 102.4 50 RF00504
RydC RNA RF00505 Gene; sRNA; 2 12 64.7 91 RF00505
Threonine operon leader RF00506 Cis-reg; 24 33 124.1 81 RF00506
Coronavirus frameshifting stimulation element RF00507 Cis-reg; frameshift_element; 23 183 82.5 80 RF00507
Small nucleolar RNA snR64 RF00509 Gene; snRNA; guide; CD-box; 3 9 102.8 89 RF00509
Tombusvirus internal replication element (IRE) RF00510 Cis-reg; 22 41 88.7 85 RF00510
Kaposi's sarcoma-associated herpesvirus internal ribosome entry site (IRES) RF00511 Cis-reg; IRES; 4 5 248.0 99 RF00511
Leucine operon leader RF00512 Cis-reg; leader; 3 25 149.0 81 RF00512
Tryptophan operon leader RF00513 Cis-reg; leader; 11 30 96.6 74 RF00513
Histidine operon leader RF00514 Cis-reg; leader; 12 36 126.9 79 RF00514
PyrR binding site RF00515 Cis-reg; 72 109 114.9 48 RF00515
ylbH leader RF00516 Cis-reg; 5 16 121.7 75 RF00516
serC leader RF00517 Cis-reg; 6 10 52.4 76 RF00517
speF leader RF00518 Cis-reg; 6 11 326.2 69 RF00518
suhB RF00519 Gene; sRNA; 13 31 74.9 51 RF00519
ybhL leader RF00520 Cis-reg; 2 7 74.4 75 RF00520
SAM riboswitch (alpha-proteobacteria) RF00521 Cis-reg; riboswitch; 12 32 76.8 59 RF00521
PreQ1 riboswitch RF00522 Cis-reg; riboswitch; 22 63 45.9 61 RF00522
Prion pseudoknot RF00523 Cis-reg; 167 1598 40.8 86 RF00523
R2 RNA element RF00524 Cis-reg; 15 15 217.1 69 RF00524
Flavivirus DB element RF00525 Cis-reg; 111 889 71.5 70 RF00525
Small nucleolar RNA Me28S-U3344 RF00526 Gene; snRNA; guide; CD-box; 3 6 81.3 88 RF00526
Small nucleolar RNA Me28S-Gm3255 RF00527 Gene; snRNA; guide; CD-box; 4 14 83.5 86 RF00527
Small nucleolar RNA Me28S-Gm1083 RF00528 Gene; snRNA; guide; CD-box; 4 30 87.5 91 RF00528
Small nucleolar RNA Me28S-Am2589 RF00529 Gene; snRNA; guide; CD-box; 3 9 108.0 74 RF00529
Small nucleolar RNA Me28S-Cm2645 RF00530 Gene; snRNA; guide; CD-box; 6 19 75.0 92 RF00530
Small nucleolar RNA Me28S-Gm3113 RF00531 Gene; snRNA; guide; CD-box; 3 6 83.2 84 RF00531
Small nucleolar RNA Me18S-Um1356 RF00532 Gene; snRNA; guide; CD-box; 3 15 84.8 92 RF00532
Small nucleolar RNA Me18S-Gm1358 RF00533 Gene; snRNA; guide; CD-box; 3 6 77.2 97 RF00533
SgrS RNA RF00534 Gene; sRNA; 7 15 76.0 88 RF00534
Small nucleolar RNA Me28S-Am982 RF00535 Gene; snRNA; guide; CD-box; 4 14 79.3 86 RF00535
Small nucleolar RNA Me28S-Cm3227 RF00536 Gene; snRNA; guide; CD-box; 4 12 81.7 94 RF00536
Small nucleolar RNA Me28S-Am2634 RF00537 Gene; snRNA; guide; CD-box; 9 24 90.2 83 RF00537
Small nucleolar RNA CD11 RF00538 Gene; snRNA; guide; CD-box; 6 9 70.7 91 RF00538
Small nucleolar RNA Me28S-Cm788 RF00539 Gene; snRNA; guide; CD-box; 3 6 72.5 93 RF00539
Small nucleolar RNA psi18S-1854 RF00540 Gene; snRNA; guide; HACA-box; 6 15 150.6 87 RF00540
Small nucleolar RNA psi28S-2876 RF00541 Gene; snRNA; guide; HACA-box; 3 6 143.3 93 RF00541
Small nucleolar RNA psi28S-1192 RF00542 Gene; snRNA; guide; HACA-box; 5 19 138.6 87 RF00542
Small nucleolar RNA psi18S-1377 RF00543 Gene; snRNA; guide; HACA-box; 5 16 132.8 78 RF00543
Small nucleolar RNA psi28S-3327 RF00544 Gene; snRNA; guide; HACA-box; 3 10 142.4 81 RF00544
Small nucleolar RNA psi18S-841/snoR66 RF00545 Gene; snRNA; guide; HACA-box; 3 7 139.7 76 RF00545
Small nucleolar RNA psi28S-3316 RF00546 Gene; snRNA; guide; HACA-box; 3 15 149.2 74 RF00546
TrkB IRES RF00547 Cis-reg; IRES; 4 9 352.6 98 RF00547
U11 spliceosomal RNA RF00548 Gene; snRNA; splicing; 9 29 137.8 59 RF00548
c-sis internal ribosome entry site (IRES) RF00549 Cis-reg; IRES; 10 14 601.9 89 RF00549
Hepatitis E virus cis-reactive element RF00550 Cis-reg; 46 82 146.7 84 RF00550
Bicoid 3'-UTR regulatory element RF00551 Cis-reg; 15 44 550.6 87 RF00551
rncO RF00552 Cis-reg; 6 24 204.1 80 RF00552
Small Cajal body specific RNA 1 RF00553 Gene; snRNA; guide; scaRNA; 3 3 165.7 92 RF00553
Small nucleolar RNA SNORA48 RF00554 Gene; snRNA; guide; HACA-box; 8 34 130.9 79 RF00554
Ribosomal protein L13 leader RF00555 Cis-reg; 19 46 66.4 64 RF00555
Ribosomal protein L19 leader RF00556 Cis-reg; 24 45 40.7 53 RF00556
Ribosomal protein L10 leader RF00557 Cis-reg; 66 66 141.3 48 RF00557
Ribosomal protein L20 leader RF00558 Cis-reg; 59 59 126.7 55 RF00558
Ribosomal protein L21 leader RF00559 Cis-reg; 33 43 77.1 56 RF00559
Small nucleolar RNA SNORA17 RF00560 Gene; snRNA; guide; HACA-box; 38 155 131.5 79 RF00560
Small nucleolar RNA SNORA40 RF00561 Gene; snRNA; guide; HACA-box; 7 23 126.2 80 RF00561
Small nucleolar RNA SNORA49 RF00562 Gene; snRNA; guide; HACA-box; 3 3 134.7 92 RF00562
Small nucleolar RNA SNORA53 RF00563 Gene; snRNA; guide; HACA-box; 4 5 246.0 90 RF00563
Small Cajal body specific RNA 11 RF00564 Gene; snRNA; guide; scaRNA; 4 6 137.3 79 RF00564
Small Cajal body specific RNA 25 RF00565 Gene; snRNA; guide; scaRNA; 3 9 134.6 80 RF00565
Small nucleolar RNA SNORA35 RF00566 Gene; snRNA; guide; HACA-box; 3 3 125.0 91 RF00566
Small nucleolar RNA SNORD17 RF00567 Gene; snRNA; guide; CD-box; 3 3 232.0 90 RF00567
Small nucleolar RNA SNORA26 RF00568 Gene; snRNA; guide; HACA-box; 12 23 121.2 73 RF00568
Small nucleolar RNA SNORD19 RF00569 Gene; snRNA; guide; CD-box; 2 4 71.0 71 RF00569
Small Nucleolar RNA SNORD64 RF00570 Gene; snRNA; guide; CD-box; 3 6 63.5 93 RF00570
Small nucleolar RNA SNORD65 RF00571 Gene; snRNA; guide; CD-box; 4 6 72.2 82 RF00571
Small nucleolar RNA SNORD66 RF00572 Gene; snRNA; guide; CD-box; 4 5 72.0 79 RF00572
Small nucleolar RNA SNORD67 RF00573 Gene; snRNA; guide; CD-box; 2 3 106.7 98 RF00573
Small nucleolar RNA SNORD69 RF00574 Gene; snRNA; guide; CD-box; 2 3 70.7 91 RF00574
Small nucleolar RNA SNORD70 RF00575 Gene; snRNA; guide; CD-box; 4 8 80.5 85 RF00575
Small nucleolar RNA SNORD71 RF00576 Gene; snRNA; guide; HACA-box; 2 3 75.3 90 RF00576
Small nucleolar RNA SNORD72 RF00577 Gene; snRNA; guide; CD-box; 3 10 77.7 90 RF00577
Small nucleolar RNA SNORD89 RF00578 Gene; snRNA; guide; CD-box; 2 4 105.5 93 RF00578
Small nucleolar RNA SNORD90 RF00579 Gene; snRNA; guide; CD-box; 2 3 96.0 92 RF00579
Small nucleolar RNA 296A/B RF00580 Gene; snRNA; guide; CD-box; 3 6 92.5 82 RF00580
Small nucleolar SNORD12/SNORD106 RF00581 Gene; snRNA; guide; CD-box; 8 10 86.1 71 RF00581
Small Cajal body specific RNA 14 RF00582 Gene; snRNA; guide; scaRNA; 4 9 129.0 69 RF00582
Small nucleolar RNA SNORD105 RF00584 Gene; snRNA; guide; CD-box; 2 5 83.8 89 RF00584
Small nucleolar RNA SNORA12 RF00586 Gene; snRNA; guide; HACA-box; 4 6 151.5 84 RF00586
Small nucleolar RNA SNORD41 RF00588 Gene; snRNA; guide; CD-box; 2 3 69.7 92 RF00588
Small nucleolar RNA SNORD77 RF00591 Gene; snRNA; guide; CD-box; 5 9 67.3 90 RF00591
Small nucleolar RNA SNORD78 RF00592 Gene; snRNA; guide; CD-box; 4 11 65.8 90 RF00592
Small nucleolar RNA U83B RF00593 Gene; snRNA; guide; CD-box; 4 9 91.4 87 RF00593
Small nucleolar RNA SNORD86 RF00594 Gene; snRNA; guide; CD-box; 6 11 83.5 81 RF00594